maq (0.7.1-10) unstable; urgency=medium * gcc-14.patch: new: fix improper uses of gzFile pointers. (Closes: #1075253) * d/*lintian-overrides: update mismatched overrides. * d/control: declare compliance to standards version 4.7.0. * d/control: add myself to uploaders. -- Étienne Mollier Mon, 05 Aug 2024 22:48:54 +0200 maq (0.7.1-9) unstable; urgency=medium * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Secure URI in copyright format (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set fields Upstream-Name, Upstream-Contact in debian/copyright. * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * watch file standard 4 (routine-update) -- Andreas Tille Mon, 16 Nov 2020 11:16:20 +0100 maq (0.7.1-8) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: - Added references to OMICtools, SciCrunch, bio.tools - yamllint cleanliness [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Lintian should not warn about script-with-language-extension see https://lists.debian.org/debian-med/2018/06/msg00043.html -- Andreas Tille Mon, 16 Jul 2018 15:42:20 +0200 maq (0.7.1-7) unstable; urgency=medium * Team upload [ Andreas Tille ] * Moved packaging from SVN to Git * hardening=+all [ Canberk Koç ] * Autopkgtest -- Canberk Koç Tue, 23 Aug 2016 00:28:13 +0300 maq (0.7.1-6) unstable; urgency=medium * moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control * Add missing manpages * Fix Mayhem issue Closes: #716112 -- Andreas Tille Wed, 16 Dec 2015 15:34:33 +0100 maq (0.7.1-5) unstable; urgency=low [ Charles Plessy ] * renamed debian/upstream-metadata.yaml to debian/upstream [ Andreas Tille ] * debian/upstream: - Removed duplicated entry DOI - Moved PMID to references * debian/source/format: 3.0 (quilt) * debian/reference: removed because references are kept in debian/upstream (also removed from debian/docs) * debian/control: - Standards-Version: 3.9.3 (no changes needed) - Fixed Vcs fields - Build-Depends: dh-autoreconf - Dropped from Build-Depends: quilt, cdbs * debian/patches/20_prevent_-64_option.patch: Dropped in favour of using dh-autoreconf * debian/rules: converted to dh * debian/copyright: cme fix dpkg-copyright * debian/patches/gcc-4.7.patch: Enable building with g++-4.7 Closes: #667270 * debian/README.source: Removed because there is no point any more to explain how to use quilt -- Andreas Tille Wed, 25 Apr 2012 14:20:16 +0200 maq (0.7.1-4) unstable; urgency=low * Development of Maq stopped in 2008. Its successors are BWA and SAMtools. (debian/control, debian/maq.doc-base). * DEP-5 conformant debian/copyright file, checked with ‘config-edit’. * Use Debhelper 8 (debian/control, debian/compat). * Collected various information in debian/upstream-metadata.yaml. * Incremented Standards-Version in debian/policy to reflect conformance with Policy 3.9.1 (no changes needed). -- Charles Plessy Sun, 13 Mar 2011 11:35:38 +0900 maq (0.7.1-3) unstable; urgency=low * Distribute scripts that are not installed by upstream’s makefile in /usr/share/maq (debian/install). * Incremented Standards-Version in debian/policy to reflect conformance with Policy 3.8.2 (no changes needed). * debian/patch: made headers conformant with current draft of DEP3. -- Charles Plessy Fri, 17 Jul 2009 22:00:02 +0900 maq (0.7.1-2) unstable; urgency=low * Enable LARGEFILE64_SOURCE to prevent a problem with zlib on 64bit archs (Thanks to Peter Green for the patch) Closes: #506009 * Standards-Version: 3.8.1 (no changes needed) -- Andreas Tille Thu, 16 Apr 2009 15:56:09 +0200 maq (0.7.1-1) unstable; urgency=low * New upstream release 0.7.1 (Closes: 505820) - Accepts reads shorter than 127 bp (63 bp before). - .map alignment changes and not backward-compatible. - Reversion to short reads possible with --enable-shortreads. * New upstream release 0.6.8 - New features for the 1000 genome project. - Error dependency coefficient reduced from 0.93 to 0.85. - Added mapvalidate command. - Support generating GLF format. - The mapcheck command can optionally dump additional information. * debian/patches: - 20_perl_path.patch deleted because accepted upstream. - 10_prevent_-64_option.patch reorganised to only modify configure.ac and forwarded upstream. - 20_prevent_-64_option.patch changes configure and can be regenerated by running autoreconf. * debian/control: typo corrected in short description (Closes: #492979) * debian/reference: BibTeX reference downloaded from http://genome.cshlp.org/citmgr?gca=genome;18/11/1851 with abstract removed because it is a copyrighted work. * debian/README.Sources renamed README.source to comply with Policy. -- Charles Plessy Sun, 16 Nov 2008 22:52:04 +0900 maq (0.6.7-1) unstable; urgency=low [ Charles Plessy ] * Initial release (Closes: #489836) [ Andreas Tille ] * Rudely deleted -m64 option from configure because multiarch building leads to several problems -- Andreas Tille Wed, 16 Jul 2008 12:01:33 +0200