mira (4.9.6-11) unstable; urgency=medium
* Do not fail when attempting to remove not exiting files
Closes: #1049789
* Fix clean target
Closes: #1045311
-- Andreas Tille <tille@debian.org> Tue, 06 Feb 2024 11:41:10 +0100
mira (4.9.6-10) unstable; urgency=medium
* Team Upload.
* Echo date with UTC explicitly to avoid TZ related pitfalls
* Update lintian override
* Do not export SOURCE_DATE_EPOCH manually, it is already exported
as a part of default.mk dpkg import
* Bump Standards-Version to 4.6.2 (no changes needed)
-- Nilesh Patra <nilesh@debian.org> Wed, 21 Jun 2023 09:11:37 +0530
mira (4.9.6-9) unstable; urgency=medium
* Team Upload.
* Make package cross-build
+ Drop un-needed B-D on perl
+ Pass boost include dir and libdir for easy cross-compilation
* Add override for README.html, source is present
in the source package.
* Set SOURCE_DATE_EPOCH, ISDEBIAN and DEBIAN_MAINTAINER
to get debian-specific repro builds working.
* Add patch to:
+ Fix upstream mistake, actually echo DEBIAN_MAINTAINER name
+ convert source-date-epoch to actual date to put into compileinfo
-- Nilesh Patra <nilesh@debian.org> Sun, 18 Jun 2023 17:56:43 +0530
mira (4.9.6-8) unstable; urgency=medium
* Team Upload.
* Add patch to fix FTBFS with gcc-13 (Closes: #1037778)
-- Nilesh Patra <nilesh@debian.org> Sun, 18 Jun 2023 01:09:50 +0530
mira (4.9.6-7) unstable; urgency=medium
* Team Upload.
* Add patch to fix gcc-12 FTBFS (Closes: #1013000)
-- Nilesh Patra <nilesh@debian.org> Fri, 24 Jun 2022 20:01:35 +0000
mira (4.9.6-6) unstable; urgency=medium
* Team upload.
[ Lance Lin ]
* Remove build-depends on vim-common and add xxd (Closes: #1007986)
[ Andreas Tille ]
* Standards-Version: 4.6.0 (routine-update)
* Do not parse d/changelog (routine-update)
* Clean-up list of Uploaders from people not working on this package
any more (thanks a lot for all previous contributions
-- Lance Lin <LQi254@protonmail.com> Wed, 06 Apr 2022 15:18:07 +0200
mira (4.9.6-5) unstable; urgency=medium
* Team upload
[ Michael R. Crusoe ]
* Update homepage URL
* Mark mira-doc as Multi-Arch: foreign
* Secure URI in copyright format
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/control
* Remove trailing whitespace in debian/copyright
[ Andreas Tille ]
* Remove unneeded get-orig-source target
* fix race condition during doc build
Closes: #970443
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Do not parse d/changelog (routine-update)
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set field Upstream-Name in debian/copyright.
[ Nilesh Patra ]
* s/DEB_SOURCE/pkg/
* Remove useless debian/*.dirs
-- Nilesh Patra <npatra974@gmail.com> Thu, 17 Sep 2020 16:34:27 +0530
mira (4.9.6-4) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata: Added references to
OMICtools and bio.tools
[ Andreas Tille ]
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* No extra manpages from Debian
-- Andreas Tille <tille@debian.org> Wed, 19 Sep 2018 22:13:29 +0200
mira (4.9.6-3) unstable; urgency=medium
* Team upload.
[ Nadiya Sitdykova ]
* Add autopkgtest test-suite for denovo, mapping and est assembly
-- Nadiya Sitdykova <rovenskasa@gmail.com> Mon, 12 Jun 2017 18:29:50 -0400
mira (4.9.6-2) unstable; urgency=medium
* debhelper 10
* d/watch: version=4
* Build-Depends: libfl-dev
Closes: #846442
* Remove unused lintian override
-- Andreas Tille <tille@debian.org> Sat, 03 Dec 2016 19:05:24 +0100
mira (4.9.6-1) unstable; urgency=medium
* New upstream release.
* dropped all patches except for one spelling fix, as they were incorporated
upstream
* dropped the -examples package for now, as the minidemo is missing from
upstream in this release.
* our manpages have been adopted and adapted upstream, so they have been
removed
* added architecture independent package for rfam 12s rRNA database
* enable building docs & rfam packages separately
* Standards-Version bump to 3.9.8
* Updated package descriptions to remove tools that upstream no longer
provides
* minidemo is missing from 4.9.6, commented out -examples package for now
* cleaned out unnecessary stanzas from debian/rules
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 04 May 2016 11:18:26 -0700
mira (4.9.5-6) unstable; urgency=medium
* Fix build issue with gcc-6
Closes: #822474
-- Andreas Tille <tille@debian.org> Mon, 25 Apr 2016 23:48:55 +0200
mira (4.9.5-5) unstable; urgency=medium
* Make build reproducible; fix FTBFS on non-'C' locales
-- Michael R. Crusoe <crusoe@ucdavis.edu> Wed, 03 Feb 2016 06:31:56 +0000
mira (4.9.5-4) unstable; urgency=medium
* Packaging moved from SVN to Git
* Loosen boost dependencies.
-- Michael R. Crusoe <crusoe@ucdavis.edu> Tue, 02 Feb 2016 00:45:21 -0800
mira (4.9.5-3) unstable; urgency=medium
* Remove *.cc files that are created by old flex version which breaks
build otherwise
Closes: #812681
-- Andreas Tille <tille@debian.org> Wed, 27 Jan 2016 13:19:53 +0100
mira (4.9.5-2) unstable; urgency=medium
* Verify that package builds without problems with gcc-5
Closes: #793261
* override false lintian positives
* Fix spelling
* wrote missing manpage and moved manpages to separate dir
-- Andreas Tille <tille@debian.org> Fri, 04 Dec 2015 12:56:09 +0100
mira (4.9.5-1) unstable; urgency=medium
* New upstream version
* Moved debian/upstream to debian/upstream/metadata
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Wed, 01 Jul 2015 22:09:47 +0200
mira (4.0.2-1) unstable; urgency=low
* new upstream version
-- Thorsten Alteholz <debian@alteholz.de> Sat, 26 Apr 2014 19:00:35 +0200
mira (4.0-1) unstable; urgency=low
[ Thorsten Alteholz ]
* New upstream version
* debian/rules: add boost dir in auto_configure (Closes: #735798)
[ Andreas Tille ]
* cme fix dpkg-control
* debian/patches/{make.patch,spelling.patch}: applied upstream (thus removed)
-- Thorsten Alteholz <debian@alteholz.de> Sun, 02 Feb 2014 22:51:35 +0100
mira (3.9.18-1) unstable; urgency=low
* New upstream version (most patches applied by upstream)
* debian/copyright: Add Upstream-Contact
* debian/control: cme fix dpkg-control
* debian/mira-assembler.lintian-overrides: deleted unused override
* debian/rules: Prevent installing duplicated data, rather
create symlink
* debian/mirabait.1: wrote missing manpage
-- Andreas Tille <tille@debian.org> Fri, 09 Aug 2013 13:59:24 +0200
mira (3.9.17-1) unstable; urgency=low
[ Thorsten Alteholz ]
* new upstream version
* debian/control: Standards-Version set to 3.9.4 (no changes)
* debian/control: DM-Upload-Allowed: removed
* debian/control: use dh 9
* debian/control: add dependency to libboost-iostreams-dev
* debian/control: improve extended descriptions
* debian/control: change VCS-tags according to new lintian
* debian/rules: get-orig-source added
* debian/watch: do not look at dev-versions
* debian/mira-doc.README.Debian: correct path to documentation
[ Dmitrijs Ledkovs ]
* Build depend on libboost-all-dev and libbz2-dev.
* Add boost-minimal patch, to add boost-libraries in final linking,
fixing FTBFS (Closes: #701322)
* Enable parallel builds, to speed up compilation.
[ Andreas Tille ]
* delete debian/README.source which is outdated / wrong
* debian/*.1: Wrote / reviewed manpages for all installed programs
* debian/miraSearchESTSNPs.1: Wrote manpage but mention that this
functionality is deactivated in version 3.9.17
* debian/mira-assembler.manpages: Simply install all manpages that can be
found
* Removed debian/obsolete.mira-assembler.install
* debian/control: The actual scripts do not contain the .tcl suffix
in our installation
* debian/rules:
- Currently miraSearchESTSNPs and miraclip claim to be deactivated so
why bothering installing these?
- Use xz compression for binaries
-- Andreas Tille <tille@debian.org> Fri, 07 Jun 2013 08:34:21 +0200
mira (3.4.0.1-3) unstable; urgency=low
[ Charles Plessy ]
* Build-depend on libgoogle-perftools-dev instead of libtcmalloc-minimal0
(debian/control, debian/README.source, debian/rules).
Closes: #673527, #674822
* Conforms to Policy 3.9.3 (debian/control, no other changes needed).
* Rely on dpkg source format 3.0 (quilt) for the patches, and remove
build dependance on quilt (debian/control, debian/rules).
* Verbose Debhelper (debian/rules).
[ Andreas Tille ]
* debian/upstream: very small fix to prevent bibcheck warning
-- Charles Plessy <plessy@debian.org> Mon, 28 May 2012 10:51:01 +0900
mira (3.4.0.1-2) unstable; urgency=low
[ Andreas Tille ]
* Remove two patches:
- read_default_constructor.patch which introduces a duplicate
bposhashstat_t() definition
- fix_duplicate_bposhashstat_t_definition.patch which removes
this duplicate afterwards
[ Charles Plessy ]
* Removed unconditional dependency on libtcmalloc-minimal0 (debian/control).
Closes: #654884
* Machine-readable debian/copyright file.
-- Charles Plessy <plessy@debian.org> Sat, 07 Jan 2012 13:24:48 +0900
mira (3.4.0.1-1) unstable; urgency=low
* New upstream version
Closes: #648762 (at least if I'm not mislead - feel free to reopen)
* debian/control:
- Added myself to Uploaders
- Depends: libtcmalloc-minimal0 [i386 amd64]
Thanks for the patch to Michael Terry <michael.terry@canonical.com>
however I left out powerpc where libtcmalloc-minimal0 is not
available
Closes: #649093
- Fixed Vcs fields
* debian/patches/fix_duplicate_bposhashstat_t_definition.patch
Remove duplicate definition of bposhashstat_t()
-- Andreas Tille <tille@debian.org> Thu, 08 Dec 2011 08:50:19 +0100
mira (3.4.0-3ubuntu1) lucid; urgency=low
* Small fix to dependencies - there is no "mira" binary package
-- Tim Booth <tbooth@ceh.ac.uk> Fri, 02 Dec 2011 15:00:35 +0000
mira (3.4.0-3) unstable; urgency=low
* Rendering Tim's additions available for Debian
-- Steffen Moeller <moeller@debian.org> Sat, 03 Sep 2011 01:02:10 +0200
mira (3.4.0-2ubuntu5) lucid; urgency=low
* Small fix to clean target and suppress warnings
on Lucid backport.
* Fixed missing dependency which caused misleading configure
failure.
* Yet another missing build dep - flex and xxd
-- Tim Booth <tbooth@ceh.ac.uk> Tue, 30 Aug 2011 17:17:11 +0100
mira (3.4.0-2) unstable; urgency=low
* Fixing source tree (removed PDF with no source)
-- Steffen Moeller <moeller@debian.org> Mon, 29 Aug 2011 22:54:53 +0200
mira (3.4.0-1) UNRELEASED; urgency=low
* New upstream version.
- added default constructor to avoid FTBFS
* Sponsoring Tim's work for Debian
* Using 3.0 (quilt) source format for bz2 upstream
-- Steffen Moeller <moeller@debian.org> Tue, 23 Aug 2011 20:46:32 +0200
mira (3.4rc3-2) lucid; urgency=low
* Version 3.2.1.8 has been removed from SF.net. Packaging the
latest RC instead.
* Fixed linking against tcmalloc (see README)
* Fixed build of docs - HTML is installed in mira-doc
-- Tim Booth <tbooth@ceh.ac.uk> Fri, 19 Aug 2011 12:35:12 +0100
mira (3.2.1.8-1) UNRELEASED; urgency=low
* Initial release (Closes: #435915)
-- Steffen Moeller <moeller@debian.org> Fri, 04 Mar 2011 11:55:25 +0100
mira (3~rc2-1) UNRELEASED; urgency=low
* Initial packaging.
-- Charles Plessy <plessy@debian.org> Tue, 08 Sep 2009 13:35:31 +0900