mothur (1.48.1-1) unstable; urgency=medium
* New upstream version 1.48.1
* Refresh patches
-- Tomasz Buchert <tomasz@debian.org> Sun, 02 Jun 2024 10:19:46 +0200
mothur (1.48.0-2) unstable; urgency=medium
* Team upload.
* Fix batch file for autopkgtest (Closes: #1014104)
* Add patch to add hardening flags
* Refresh patch
-- Mohammed Bilal <mdbilal@disroot.org> Sat, 06 Aug 2022 14:24:47 +0000
mothur (1.48.0-1) unstable; urgency=medium
* New upstream version 1.48.0
* Refresh patches
-- Tomasz Buchert <tomasz@debian.org> Mon, 20 Jun 2022 13:58:22 +0200
mothur (1.46.1-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* Fix build with gcc-11
Closes: #984243
* Follow parts of the hints by Aaron M. Ucko
* Fix linking
[ Hamid Nassiby ]
* Fix linking
-- Andreas Tille <tille@debian.org> Mon, 08 Nov 2021 18:08:09 +0100
mothur (1.44.3-2) unstable; urgency=medium
* Do not include sys/sysctl.h since it will be removed and is
not used anyway
Closes: #967985
* Standards-Version: 4.5.1 (routine-update)
* Set upstream metadata fields: Repository, Repository-Browse.
-- Andreas Tille <tille@debian.org> Fri, 04 Dec 2020 22:37:41 +0100
mothur (1.44.3-1) unstable; urgency=medium
* New upstream version 1.44.3
* Remove fix_makefile patch
-- Tomasz Buchert <tomasz@debian.org> Fri, 04 Sep 2020 09:34:50 +0200
mothur (1.44.2-1) unstable; urgency=medium
* New upstream version
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit.
* Remove obsolete fields Contact, Name from debian/upstream/metadata (already
present in machine-readable debian/copyright).
* Fix include
Closes: #963288
* Fix makefile
* Do not build uchime explicitly in d/rules
-- Andreas Tille <tille@debian.org> Wed, 22 Jul 2020 11:35:13 +0200
mothur (1.44.1-1) unstable; urgency=medium
* Update d/watch to cover releases such as "v.1.44.1"
* New upstream version 1.44.1
-- Tomasz Buchert <tomasz@debian.org> Mon, 18 May 2020 09:38:14 +0200
mothur (1.44.0-1) unstable; urgency=medium
[ Steffen Möller ]
* Added ref to conda
* Update metadata ref to bio.tools
[ Tomasz Buchert ]
* New upstream version 1.44.0
* Standards-Version: 4.5.0
* Refresh debian/patches
-- Tomasz Buchert <tomasz@debian.org> Wed, 06 May 2020 11:27:19 +0200
mothur (1.42.1-1) unstable; urgency=medium
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.4.0
* Use secure URI in Homepage field.
-- Andreas Tille <tille@debian.org> Thu, 01 Aug 2019 19:24:04 +0200
mothur (1.41.21-1) unstable; urgency=medium
* Do not report pre-releases
* New upstream version
* debhelper 12
* Standards-Version: 4.3.0
* override_dh_dwz
-- Andreas Tille <tille@debian.org> Wed, 30 Jan 2019 11:24:42 +0100
mothur (1.40.5-2) unstable; urgency=medium
* Upstream dropped MPI support since it is slower and requires dual
maintenance (see README.Debian) Thus dropping MPI support from
Debian package
Closes: #908786
* Remove Tim Booth from Uploaders (Tim, thanks for your work on this
package)
* Drop unneeded get-orig-source target
* Standards-Version: 4.2.1
-- Andreas Tille <tille@debian.org> Fri, 14 Sep 2018 10:29:24 +0200
mothur (1.40.5-1) unstable; urgency=medium
* New upstream version 1.40.5
-- Tomasz Buchert <tomasz@debian.org> Tue, 26 Jun 2018 18:04:50 +0200
mothur (1.40.4-1) unstable; urgency=medium
* New upstream version 1.40.4
-- Tomasz Buchert <tomasz@debian.org> Sat, 16 Jun 2018 15:58:20 +0200
mothur (1.40.3-1) unstable; urgency=medium
[ Steffen Moeller ]
* debian/upstream/metadata:
- added references to registries
- yamllint cleanliness
[ Tomasz Buchert ]
* fix insecure-copyright-format-uri
* use debhelper compat 11
* New upstream version 1.40.3
[ Andreas Tille ]
* Spacing
* Remove invalid fields from debian/upstream/metadata
-- Tomasz Buchert <tomasz@debian.org> Sat, 19 May 2018 15:48:02 +0200
mothur (1.39.5-2) unstable; urgency=medium
* Team upload.
[ Nadiya Sitydykova ]
* Add simple autopkgtest test-suite
-- Nadiya Sitdykova <rovenskasa@gmail.com> Mon, 19 Jun 2017 22:00:56 -0400
mothur (1.39.5-1) unstable; urgency=medium
* New upstream version 1.39.5
* d/patches: refresh
-- Tomasz Buchert <tomasz@debian.org> Sat, 25 Mar 2017 12:02:56 +0100
mothur (1.39.4-1) unstable; urgency=medium
* New upstream version 1.39.4
* Refresh patches
-- Tomasz Buchert <tomasz@debian.org> Tue, 14 Mar 2017 23:28:09 +0100
mothur (1.39.3-1) unstable; urgency=medium
[ Steffen Moeller ]
* Corrected EDAM annotation file
[ Tomasz Buchert ]
* New upstream version 1.39.3
* Refresh patches
-- Tomasz Buchert <tomasz@debian.org> Sun, 26 Feb 2017 15:56:50 +0100
mothur (1.38.1.1-1) unstable; urgency=medium
* New upstream version
Closes: #846486
* debhelper 10
* d/watch: version=4
* Fix spelling
-- Andreas Tille <tille@debian.org> Sat, 10 Dec 2016 08:23:57 +0100
mothur (1.38.0-1) unstable; urgency=medium
* Imported Upstream version 1.38.0
-- Tomasz Buchert <tomasz@debian.org> Sat, 30 Jul 2016 01:16:52 +0200
mothur (1.37.6-1) unstable; urgency=medium
* Imported Upstream version 1.37.6
-- Tomasz Buchert <tomasz@debian.org> Wed, 22 Jun 2016 22:15:49 +0200
mothur (1.37.5-1) unstable; urgency=medium
* Imported Upstream version 1.37.5
-- Tomasz Buchert <tomasz@debian.org> Sun, 12 Jun 2016 19:58:02 +0200
mothur (1.37.3-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* better description for mothur-mpi
* propagate hardening options to uchime build
* better hardening
-- Andreas Tille <tille@debian.org> Sat, 07 May 2016 17:54:19 +0200
mothur (1.36.1-1) unstable; urgency=medium
* Imported Upstream version 1.36.1
* d/watch: switch to github & don't repack
* d/copyright: update and improve
* d/rules: make build simpler
* d/patches: refresh and reapply
* d/control: build with boost library
* d/control: bump std-ver to 3.9.6
* d/patches: pass compiler flags properly
* Added myself as uploader
* move packaging from SVN to Git
-- Tomasz Buchert <tomasz@debian.org> Mon, 07 Sep 2015 10:49:18 +0200
mothur (1.33.3+dfsg-2) unstable; urgency=medium
* Re-Add changes from BioLinux which reads in SVN:
Add the important .pat files and tell Mothur how to find them
(certainly not in /usr/bin) (see debian/patches/find_pat_files)
-- Andreas Tille <tille@debian.org> Fri, 25 Apr 2014 17:39:09 +0200
mothur (1.33.3+repack-0biolinux2) trusty; urgency=low
* Refresh patches and build for Ubuntu Trusty
-- Tim Booth <tbooth@ceh.ac.uk> Thu, 24 Apr 2014 18:41:42 +0100
mothur (1.33.3+dfsg-1) unstable; urgency=medium
* New upstream version
-- Andreas Tille <tille@debian.org> Sat, 22 Mar 2014 21:33:31 +0100
mothur (1.33.0+dfsg-1) unstable; urgency=medium
* New upstream version
* debian/upstream -> debian/upstream/metadata
* Standards-Version: 3.9.5
-- Andreas Tille <tille@debian.org> Tue, 25 Feb 2014 13:31:27 +0100
mothur (1.31.2+dfsg-2) unstable; urgency=low
* Team upload.
* debian/patches/makefile.patch: Leave off -m64, which ia64 doesn't
support and other 64-bit architectures don't need. (Closes: #721770.)
-- Aaron M. Ucko <ucko@debian.org> Wed, 04 Sep 2013 22:37:31 -0400
mothur (1.31.2+dfsg-1) unstable; urgency=low
* New upstream version
* debian/watch: use dversionmangle to properly detect new upstream
versions
* debian/copyright: Add Files-Excluded to document what was removed from
original source
* debian/rules: Use enhanced uscan
* debian/control:
- cme fix dpkg-control
- debhelper 9
- use anonscm for Vcs fields
* debian/patches/uchime_hardening.patch: Hardening for uchime
* debian/uchime.1
* debian/patches/spelling.patch: Some spelling corrections
-- Andreas Tille <tille@debian.org> Tue, 30 Jul 2013 14:32:44 +0200
mothur (1.31.2+repack-0biolinux1) precise; urgency=low
* New upstream
* All patches look OK
-- Tim Booth <tbooth@ceh.ac.uk> Fri, 16 Aug 2013 12:09:01 +0100
mothur (1.30.2+repack-0ubuntu1) precise; urgency=low
* New upstream
* Drop unneeded patch from last time
-- Tim Booth <tbooth@ceh.ac.uk> Tue, 30 Apr 2013 11:56:20 +0100
mothur (1.29.0+repack-0ubuntu1) precise; urgency=low
* New upstream for January
* Patch to fix compilation on MPI - not sure if it is right
-- Tim Booth <tbooth@ceh.ac.uk> Tue, 15 Jan 2013 14:51:19 +0000
mothur (1.28.0+repack-precise2) precise; urgency=low
* New upstream, build for precise
* Enable mpi for 32-bit, for completeness
* Note that this should really be version -0ubuntu2, but its
too late to go there
* Parallel build enabled
-- Tim Booth <tbooth@ceh.ac.uk> Thu, 10 Jan 2013 15:22:35 +0000
mothur (1.27.0+repack-precise1) precise; urgency=low
* Remove -march=native from makefile as this makes the result
depend on the build machine - so a package built on a Core3
CPU won't work on a Xeon.
-- Tim Booth <tbooth@ceh.ac.uk> Fri, 12 Oct 2012 11:41:04 +0100
mothur (1.27.0+repack-precise2) precise; urgency=low
* New minor release from upstream
* Build MPI version alongside regular version
* ...but only for 64-bit
-- Tim Booth <tbooth@ceh.ac.uk> Wed, 10 Oct 2012 11:20:43 +0100
mothur (1.25.0~repack-lucid3) lucid; urgency=low
* Removed dependency on catchall - this belongs in the
bio-linux-mothur package. Not sure what I was thinking there.
-- Tim Booth <tbooth@ceh.ac.uk> Mon, 14 May 2012 10:57:22 +0100
mothur (1.25.0~repack-lucid2) lucid; urgency=low
* Fix 32-bit build and add uchime (which should be packaged
separately, but I've no time for that just now)
-- Tim Booth <tbooth@ceh.ac.uk> Thu, 10 May 2012 10:43:04 +0100
mothur (1.25.0~repack-lucid1) lucid; urgency=low
* Rebuild for Lucid with repack fudge again
-- Tim Booth <tbooth@ceh.ac.uk> Wed, 09 May 2012 11:20:15 +0100
mothur (1.25.0-1) UNRELEASED; urgency=low
* New upstream release
* debian/upstream: more complete authors information in proper BibTeX
format
-- Andreas Tille <tille@debian.org> Tue, 08 May 2012 18:00:19 +0200
mothur (1.24.1-1) unstable; urgency=low
* New upstream version
- adpated patches
- droped debian/patches/kfreebsd.patch because it was applied
upstream
-- Andreas Tille <tille@debian.org> Tue, 03 Apr 2012 09:05:44 +0200
mothur (1.23.1-1) unstable; urgency=low
* New upstream version (including updating patches)
* debian/upstream:
- fixed typo: s/TITILE/TITLE/
- Moved DOI+PMID to references
* debian/control:
- Standards-Version: 3.9.3 (no changes needed)
- Build-Depends: gfortran
* debian/get-orig-source:
- be not that verbose
- more reproducible creation of tarball
- Strip some useless files from tarball (.*; *.o)
* debhelper 9 (control+compat)
* debian/copyright: DEP5 changes and verified using
cme fix dpkg-copyright
-- Andreas Tille <tille@debian.org> Thu, 08 Mar 2012 14:52:47 +0100
mothur (1.22.2-2) unstable; urgency=low
* debian/patches/kfreebsd.patch: Enable build on BSD machines
(thanks to Christoph Egger <christoph@debian.org> and Robert
Millan <rmh@debian.org>)
Closes: #650683
* debian/control: Fixed Vcs fields
* debian/{control,rules}: drop explicite quilt dependency which is
just given by source format 3.0 (quilt)
-- Andreas Tille <tille@debian.org> Tue, 06 Dec 2011 17:14:49 +0100
mothur (1.22.2~repack-ubuntu1) lucid; urgency=low
* Backport for Ubuntu
* Need to fudge version as upstream was repacked by Andreas'
script
-- Tim Booth <tbooth@ceh.ac.uk> Mon, 05 Dec 2011 17:37:16 +0000
mothur (1.22.2-1) unstable; urgency=low
* New upstream version
* debian/patches/drop_sse_option.patch: Fix for FTBFS: unrecognized
command line option '-msse2' (Thanks for the patch to
Nobuhiro Iwamatsu <iwamatsu@nigauri.org>)
Closes: #648255
-- Andreas Tille <tille@debian.org> Thu, 10 Nov 2011 08:38:32 +0100
mothur (1.22.1-1) unstable; urgency=low
[ Thorsten Alteholz ]
* new upstream version
* adapted patches to this version
* debian/control: no dependency on quilt needed
* debian/control + debian/compat: dh version set to >= 8
[ Andreas Tille ]
* debian/control: readd quilt dependency because build fails otherwise
* debian/copyright: fix spelling error
-- Andreas Tille <tille@debian.org> Mon, 07 Nov 2011 11:14:17 +0100
mothur (1.18.1-1) unstable; urgency=low
* New upstream version (adapted patches to new location of
makefile)
* debian/rules: No need to specify SOURCEDIR any more
* Added Tim Booth <tbooth@ceh.ac.uk> as Uploader,
removed Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de>
from uploaders
* Standards-Version: 3.9.2 (no changes needed)
-- Andreas Tille <tille@debian.org> Tue, 26 Apr 2011 19:58:45 +0200
mothur (1.18.0-1ubuntu1) lucid; urgency=low
* Rebuild for PPA
* Source now comes in subdirectory Mothur.source - modify rules file
to handle this
-- Tim Booth <tbooth@ceh.ac.uk> Thu, 14 Apr 2011 14:50:24 +0100
mothur (1.17.3-1) unstable; urgency=low
* New upstream version, which specifically solves some copyright
questions of ftpmaster (Charles, thanks for reviewing
debian/copyright)
Closes: #589675
* Updated patches
* debian/copyright:
Clarified license issues
-- Andreas Tille <tille@debian.org> Wed, 30 Mar 2011 09:01:52 +0200
mothur (1.15.0-1ubuntu1) lucid; urgency=low
* Rebuild for upload to PPA, license or not.
-- Tim Booth <tbooth@ceh.ac.uk> Sun, 30 Jan 2011 12:14:18 +0000
mothur (1.15.0-1) unstable; urgency=low
* Initial release (Closes: #589675)
-- Andreas Tille <tille@debian.org> Wed, 02 Feb 2011 08:59:45 +0100