nanopolish (0.14.0-1) unstable; urgency=medium
* Team Upload.
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.6.1 (routine-update)
[ Nilesh Patra ]
* Add opt to link against external slow5lib
* B-D on libslow5lib
* d/rules: export SLOW5LIB=external
-- Nilesh Patra <nilesh@debian.org> Sat, 09 Jul 2022 23:37:52 +0530
nanopolish (0.13.3-2) unstable; urgency=medium
* Team Upload.
* d/rules: Explicitly call $(MAKE) on nanopolish_test so as to
vendor the same even when nocheck is enabled (Closes: #983767)
* Bump Standards-Version to 4.6.0 (no changes needed)
* Bump debhelper compatibility level to 13
* Bump watch file version to 4
-- Nilesh Patra <nilesh@debian.org> Wed, 25 Aug 2021 01:51:10 +0530
nanopolish (0.13.3-1) unstable; urgency=medium
* Team Upload.
* New upstream version 0.13.3
* Refresh and remove merged patches
* Update Manpages
-- Nilesh Patra <nilesh@debian.org> Sun, 15 Aug 2021 18:08:24 +0530
nanopolish (0.13.2-3) unstable; urgency=medium
* Since we need the executable createt inside build time test in autopkgtest
this is enforced in dh_auto_build to circumvent nocheck.
Closes: #983767
-- Andreas Tille <tille@debian.org> Mon, 01 Mar 2021 16:39:39 +0100
nanopolish (0.13.2-2) unstable; urgency=medium
* Team upload.
* Patch code to not define PR_R7 and PT_R9 to avoid FTBFS on
some archs (Closes: #960634)
Thanks to Barry Arndt for the hint.
-- Sascha Steinbiss <satta@debian.org> Sat, 20 Feb 2021 15:06:55 +0100
nanopolish (0.13.2-1) unstable; urgency=medium
[ Michael R. Crusoe ]
* Team upload.
* New upstream version
* Enable building anywhere, there are no longer any SIMD intrinsics
-- Steffen Moeller <moeller@debian.org> Sun, 03 May 2020 19:25:27 +0200
nanopolish (0.12.1-2) unstable; urgency=medium
* Versioned Build-Depends against libminimap2-dev (>= 2.17+dfsg-8)
(Thanks to Hamid Nassiby)
Closes: #958081
-- Andreas Tille <tille@debian.org> Sat, 18 Apr 2020 18:51:43 +0200
nanopolish (0.12.1-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Submit. (routine-update)
* Introduced dependency on libminimap2-dev
-- Steffen Moeller <moeller@debian.org> Sat, 14 Mar 2020 15:58:17 +0100
nanopolish (0.11.3-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Steffen Moeller <moeller@debian.org> Sat, 21 Dec 2019 19:10:21 +0100
nanopolish (0.11.2-1) unstable; urgency=medium
[ Michael R. Crusoe ]
* New upstream release
Closes: #931784, #937105
* debhelper-compat 12
* Added patch to fixed #! for the python scripts
* Set upstream metadata fields: Repository.
[ Andreas Tille ]
* Standards-Version: 4.4.1
* Set upstream metadata fields: Bug-Database, Repository-Browse.
* Unify autopkgtest
-- Andreas Tille <tille@debian.org> Wed, 11 Dec 2019 15:48:48 +0100
nanopolish (0.11.1-1) unstable; urgency=medium
* Afif Elghraoui removed himself from Uploaders
* Add myself to Uploaders
* Make nanopolish_makerange accessible in /usr/bin
* Asked upstrem for Python3 port
https://github.com/jts/nanopolish/issues/626
* New upstream version
-- Andreas Tille <tille@debian.org> Wed, 10 Jul 2019 13:12:23 +0200
nanopolish (0.11.0-2) unstable; urgency=medium
* Team upload.
[ Matthias Klose ]
* Fix autopkg test.
* Fix autopkg test dependency.
[ Andreas Tille ]
* Secure URI in copyright format
* Remove trailing whitespace in debian/copyright
-- Andreas Tille <tille@debian.org> Sun, 27 Jan 2019 11:27:03 +0100
nanopolish (0.11.0-1) unstable; urgency=medium
* Team upload.
* Recommends: python-pysam, python-biopython
* debhelper 12
* Standards-Version: 4.3.0
* Fix permissions
* Fix path for Python interpreter
* Better care for Python scripts
-- Andreas Tille <tille@debian.org> Thu, 24 Jan 2019 09:11:19 +0100
nanopolish (0.10.2-1) unstable; urgency=medium
* Team upload.
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Fix path for Perl interpreter
* Enhance long description
-- Andreas Tille <tille@debian.org> Thu, 13 Sep 2018 11:37:24 +0200
nanopolish (0.9.0-1) unstable; urgency=medium
* New upstream version
* Refresh patches
* Bump upstream copyright year
* Bump minimum required fast5 version
* Include upstream patch to fix HDF5 errors appearing in autopkgtest
-- Afif Elghraoui <afif@debian.org> Sat, 17 Feb 2018 22:02:10 -0500
nanopolish (0.8.5-2) unstable; urgency=low
* Remove dependency on nonexistent package sse-support [i386]
-- Afif Elghraoui <afif@debian.org> Sun, 04 Feb 2018 19:38:40 -0500
nanopolish (0.8.5-1) unstable; urgency=medium
* New upstream version
* d/control:
+ Add sse-support to Build-Depends for i386
+ Remove explicit declaration of x32
* Bump Standards-Version to 4.1.3
* Drop patches applied upstream
* Drop useless patch
* Bump copyright years
-- Afif Elghraoui <afif@debian.org> Sun, 04 Feb 2018 16:17:01 -0500
nanopolish (0.8.4-1) unstable; urgency=medium
[ Steffen Moeller ]
* upstream/metadata RRID->SciCrunch
[ Afif Elghraoui ]
* New upstream version
* Bump fast5 minimum version
* Update and refine patch stack
* Improve handling of external dependencies and build flags
* d/rules
+ Remove redundant LDFLAGS setting
+ Don't override upstream optimization flags with default -O2
* Bump Standards-Version to 4.1.1
-- Afif Elghraoui <afif@debian.org> Sat, 11 Nov 2017 00:45:23 -0500
nanopolish (0.8.1-2) unstable; urgency=medium
* Team upload.
* Hack around broken clean target which tries to build dependencies from
external sources
* DEP3
* Fix path tp hdf5 lib on i386 (thanks for the hint to Christian Seiler
<christian@iwakd.de>)
* Restrict Architectures: any-amd64 any-i386 x32
since immintrin.h is a x86/amd64 specific header for intrinsics not
available on other architectures (Thanks for the hint to Gert Wollny
<gw.fossdev@gmail.com>)
* Depends: sse-support [any-i386] (thanks for the hint to Christian Seiler
<christian@iwakd.de>)
-- Andreas Tille <tille@debian.org> Tue, 19 Sep 2017 15:37:43 +0200
nanopolish (0.8.1-1) unstable; urgency=medium
[ Steffen Moeller ]
* Team upload
* New upstream version (Closes: #853568)
- bumped dependency on fast5 to 0.6.2
- established compatibility with gcc/g++ 7
- needed some extra persuasion to not download
eigen library.
- added link-time optimisation
* debian/upstream/metadata: Added references to registries
[ Andreas Tille ]
* debhelper 10
* Standards-Version: 4.1.0 (no changes needed)
-- Steffen Moeller <moeller@debian.org> Thu, 14 Sep 2017 16:59:29 +0200
nanopolish (0.5.0-1) unstable; urgency=medium
* Imported Upstream version 0.5.0
- Refresh and update patches
- Add build dependency on libeigen3
- Fix "clean" target
* Update email address and copyright year
* Fix compatibility with fast5 0.5.6
-- Afif Elghraoui <afif@debian.org> Fri, 12 Aug 2016 00:05:16 -0700
nanopolish (0.4.0-3) unstable; urgency=medium
* Team upload.
* Make build reproducible.
-- Sascha Steinbiss <satta@debian.org> Mon, 08 Aug 2016 12:34:56 +0000
nanopolish (0.4.0-2) unstable; urgency=medium
* Team upload.
* Fix FTBFS with GCC 6 (Closes: #831151)
* Enable full hardening.
* Fix Vcs-Browser link.
* Use secure Vcs-*.
* Bump Standards-Version.
-- Sascha Steinbiss <satta@debian.org> Fri, 05 Aug 2016 20:51:28 +0000
nanopolish (0.4.0-1) unstable; urgency=low
* Initial release (Closes: #811458)
-- Afif Elghraoui <afif@ghraoui.name> Wed, 20 Jan 2016 19:53:16 -0800