picard-tools (2.18.25+dfsg-2) unstable; urgency=medium * Architecture amd64 (for libpicard-java and picard-tools) Closes: #921185 * Remove trailing whitespace in debian/changelog -- Andreas Tille Sun, 03 Feb 2019 08:53:09 +0100 picard-tools (2.18.25+dfsg-1) unstable; urgency=medium * New upstream release -- Olivier Sallou Fri, 25 Jan 2019 10:46:36 +0000 picard-tools (2.18.23+dfsg-2) unstable; urgency=medium * Fix Class-Path in manifest file for dependencies (Closes: #919559). -- Olivier Sallou Thu, 17 Jan 2019 15:54:27 +0000 picard-tools (2.18.23+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 12 * Standards-Version: 4.3.0 -- Andreas Tille Fri, 11 Jan 2019 22:52:33 +0100 picard-tools (2.18.17+dfsg-1) unstable; urgency=medium [ Emmanuel Bourg ] * Fixed the build failure with Java 11 Closes: #915898, #880258 [ Andreas Tille ] * New upstream version * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/control * Remove trailing whitespace in debian/rules * Add ALIGNMENT_STATUS=All to command line Closes: #905645 -- Andreas Tille Wed, 12 Dec 2018 09:06:37 +0100 picard-tools (2.18.14+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.2.1 * Fix link Closes: #905706 * Versioned Build-Depends: libhtsjdk-java (>= 2.16.1~) * d/rules: Respect DEB_BUILD_OPTIONS in override_dh_auto_test * Simplified d/copyright by not mentioning every single file -- Andreas Tille Wed, 19 Sep 2018 09:20:48 +0200 picard-tools (2.18.2+dfsg-1) unstable; urgency=medium * New upstream version * Backports-friendly debhelper 11 * Bump versioned Build-Depends on libhtsjdk-java and default-jdk [O. Sallou] * Java 9/10 fixes * Remove Google NIO support (not packaged in Debian) * Enable unit tests after jcommander fix -- Andreas Tille Tue, 17 Apr 2018 22:45:38 +0200 picard-tools (2.8.1+dfsg-4) unstable; urgency=medium * Team upload. * Fixed the build failure with Java 9 (Closes: #894329) * Standards-Version updated to 4.1.4 * Switch to debhelper level 11 * Use salsa.debian.org Vcs-* URLs -- Emmanuel Bourg Fri, 06 Apr 2018 17:36:09 +0200 picard-tools (2.8.1+dfsg-3) unstable; urgency=medium * debian/upstream/metadata: RRID -> SciCrunch [ Olivier Sallou ] * d/patches/40-tests-fix-testng.patch: fix testng reference * d/rules: disable unit tests due to gradle 3.2+testng issue (will be fixed by gradle 3.4), lower #880258 severity -- Steffen Moeller Sun, 22 Oct 2017 18:38:46 +0200 picard-tools (2.8.1+dfsg-2) unstable; urgency=medium * Team upload. * Add simple autopkgtest test-suite Closes: #848334 * Add README.test -- Nadiya Sitdykova Fri, 31 Mar 2017 01:15:20 -0400 picard-tools (2.8.1+dfsg-1) unstable; urgency=medium [ Vincent Danjean ] * Ensure versioned B-D and Depends are in sync [ Andreas Tille ] * New upstream version -- Andreas Tille Tue, 10 Jan 2017 11:20:45 +0100 picard-tools (2.8.0+dfsg-2) unstable; urgency=medium * Fix versioned Depends Closes: #848831 -- Andreas Tille Tue, 20 Dec 2016 08:52:21 +0100 picard-tools (2.8.0+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * debhelper 10 * d/watch: version=4 * Ensure that major version of htsjdk is 2.8 [ Vincent Danjean ] * Really force C locale for tests * Fix parameter type for one test * cleanup generated test files -- Andreas Tille Sun, 18 Dec 2016 19:29:34 +0100 picard-tools (2.7.1+dfsg-2) unstable; urgency=medium * Rebuild with htsjdk 2.7 * Ensure for build and runtime that major versions of picard-tools and htsjdk are the same. -- Vincent Danjean Sun, 27 Nov 2016 21:01:25 +0100 picard-tools (2.7.1+dfsg-1) unstable; urgency=medium * New upstream version -- Andreas Tille Thu, 27 Oct 2016 17:10:08 +0200 picard-tools (2.6.0+dfsg-1) unstable; urgency=medium * Team upload. [ Andreas Tille ] * New upstream version * Bump versioned dependency of libhtsjdk-java * d/copyright: remove *.bak files which are removed in clean target anyway [ Vincent Danjean ] * Avoid warnings when running PicardCommandLine [ Sascha Steinbiss ] * Patch build.gradle to remove shadowJar. * Fix test case with mismatching data provider and test method. * Drop unneeded jh_installlibs override. * Remove duplicated build-deps. -- Sascha Steinbiss Sat, 10 Sep 2016 15:55:28 +0000 picard-tools (2.5.0-gradle+dfsg-1) unstable; urgency=medium * New upstream release * Switch to gradle build system -- Vincent Danjean Thu, 07 Jul 2016 10:21:33 +0200 picard-tools (2.1.1+dfsg-1) unstable; urgency=medium * New upstream version * Adapt debian/watch to use xz compression * Remove Shaun Jackman and add myself as Uploader * cme fix dpkg-control [ Steffen Moeller and Jon Ison ] * Added EDAM annotation to debian/upstream/edam -- Andreas Tille Tue, 05 Apr 2016 09:59:27 +0200 picard-tools (1.138+dfsg.1-1) unstable; urgency=medium * New release from new upstream location (github). Closes: #798051 * Full reorganization of the packaging -- Vincent Danjean Tue, 08 Sep 2015 11:15:42 +0200 picard-tools (1.113-2) unstable; urgency=medium * Team upload. * Replaced the dependency on libsnappy1.0.3-java with libsnappy-java. * Standards-Version updated to 3.9.6 (no changes) -- Emmanuel Bourg Wed, 02 Sep 2015 13:10:32 +0200 picard-tools (1.113-1) unstable; urgency=medium * New upstream release 1.113 -- Olivier Sallou Fri, 06 Jun 2014 23:27:25 +0200 picard-tools (1.110-1) unstable; urgency=medium * Imported Upstream version 1.110. * Normalised debian/control with config-model-edit. * Refreshed patch ‘use_libjbzip2-java’. -- Charles Plessy Sun, 06 Apr 2014 10:56:12 +0900 picard-tools (1.109-1) unstable; urgency=medium * Imported Upstream versions 1.106, 1.107, 1.108 and 1.109. -- Charles Plessy Sat, 22 Mar 2014 11:35:22 +0900 picard-tools (1.105-1) unstable; urgency=low * New upstream release 1.105 * Conforms with Policy 3.9.5. -- Olivier Sallou Tue, 24 Dec 2013 11:16:18 +0100 picard-tools (1.100-1) unstable; urgency=low [Charles Plessy] * Imported Upstream version 1.100 * Compress the source archive with XZ. * Mark the use of git-buildpackage and pristine-tar with a gbp.conf file. [Olivier Sallou] * d/rules: fix build for release -- Charles Plessy Sun, 20 Oct 2013 10:38:11 +0900 picard-tools (1.95-1) unstable; urgency=low * New upstream release * Fix man page with missing tools from previous releases * Fix picard-tools binary to manage missing tools from previous releases * Fix management of JAVA_OPTIONS if not set at all. -- Olivier Sallou Thu, 25 Jul 2013 13:36:02 +0200 picard-tools (1.90-3) unstable; urgency=low * Add possibility to specify JAVA options (Closes: #705681), with JAVA_OPTIONS env variable. -- Olivier Sallou Tue, 09 Jul 2013 09:20:07 +0200 picard-tools (1.90-2) unstable; urgency=low * Load in unstable, all deps are available. -- Olivier Sallou Sun, 02 Jun 2013 10:57:05 +0200 picard-tools (1.90-1) experimental; urgency=low * New upstream release -- Olivier Sallou Wed, 01 May 2013 13:57:05 +0200 picard-tools (1.87-1) experimental; urgency=low * New upstream release -- Olivier Sallou Wed, 01 May 2013 15:14:04 +0100 picard-tools (1.82-2) unstable; urgency=low * Fix classpath for BuildBamIndex (Closes: #705686). -- Olivier Sallou Fri, 19 Apr 2013 14:26:23 +0200 picard-tools (1.82-1) unstable; urgency=low * New upstream release -- Olivier Sallou Thu, 03 Jan 2013 10:46:26 +0100 picard-tools (1.80-1) unstable; urgency=low * New upstream release -- Olivier Sallou Sun, 02 Dec 2012 23:10:10 +0100 picard-tools (1.79-1) unstable; urgency=low * New upstream release 1.79 -- Olivier Sallou Mon, 29 Oct 2012 08:58:44 +0100 picard-tools (1.78-1) unstable; urgency=low * New upstream release -- Olivier Sallou Sat, 13 Oct 2012 11:20:49 +0200 picard-tools (1.77-1) unstable; urgency=low * New upstream release -- Olivier Sallou Fri, 21 Sep 2012 16:41:23 +0200 picard-tools (1.76-1) unstable; urgency=low * New upstream release -- Olivier Sallou Fri, 07 Sep 2012 11:44:03 +0200 picard-tools (1.75-1) unstable; urgency=low [Olivier Sallou] * New upstream releases. * Build-depend on libsnappy1.0.3-java (debian/control). [Charles Plessy] * Refreshed debian/patches/01-build.xml. * Use default java implementation. - debian/control: BD on default-jdk, switch runtime dependency to default-jre | java6-runtime. - debian/rules: Specify source/target = 1.5 to ensure that backwards compatible bytecode is built. - Closes: #684172, thanks to J. Page and Ubuntu. -- Olivier Sallou Thu, 06 Sep 2012 09:10:11 +0900 picard-tools (1.46-1) unstable; urgency=low * New upstream release. * Depend on ${python:Depends} (debian/changelog). * Incremented Standards-Version to reflect conformance with Policy 3.9.2 (debian/changelog, no changes needed). * Corrected and validated debian/copyright machine-readable format. -- Charles Plessy Fri, 03 Jun 2011 20:50:00 +0900 picard-tools (1.41-1) unstable; urgency=low * New upstream release. Closes: #619201. * Add five commands to bin/picard-tools and picard-tools.1. -- Shaun Jackman Tue, 22 Mar 2011 10:52:23 -0700 picard-tools (1.27-1) unstable; urgency=low * New upstream release. * Incremented Standards-Version to reflect conformance with Policy 3.9.1 (debian/changelog, no changes needed). -- Charles Plessy Tue, 03 Aug 2010 20:20:10 +0900 picard-tools (1.25-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Tue, 06 Jul 2010 16:06:18 -0700 picard-tools (1.24-1) UNRELEASED; urgency=low * Initial release. Closes: #586015. -- Shaun Jackman Tue, 15 Jun 2010 10:41:09 -0700