pymol (3.1.0+dfsg-1) unstable; urgency=medium
* New upstream release.
* debian/patches/27_fix_pymol_path_in_setup.patch: Refreshed.
* debian/patches/28_no_data_install_in_python_path.patch: Likewise.
* debian/patches/32_fix_spelling_lintian_warnings.patch: Likewise.
* debian/control (Build-Depends): Added cmake.
* debian/rules: Force PYBUILD_SYSTEM to distutils in order to avoid pybuild
directly calling cmake.
-- Michael Banck <mbanck@debian.org> Mon, 17 Mar 2025 09:37:33 +0100
pymol (3.0.0+dfsg-3) unstable; urgency=medium
* Add explicit build-dependency on python3-setuptools (Closes: #1080880)
-- Alexandre Detiste <tchet@debian.org> Mon, 03 Feb 2025 01:14:53 +0100
pymol (3.0.0+dfsg-2) unstable; urgency=medium
[ Alexandre Detiste ]
* debian/control (python3-pymol/Depends): Added python3-legacy-cgi
(Closes: #1084571).
-- Michael Banck <mbanck@debian.org> Sun, 19 Jan 2025 17:37:57 +0100
pymol (3.0.0+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Substituted module imp with importlib (patch 22)
* d/u/metadata:
- Changed bio.tools entry to all lowercase.
- Updated refs from sf.net to GitHub
* d/u/edam - new
* d/copyright: Removed modules/cealign that is no longer shipping
(lintian warning)
* Standards-Version: 4.7.0 (routine-update)
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* Update lintian override info format in
d/python3-pymol.lintian-overrides on line 6-7.
* Remove constraints unnecessary since bullseye (oldstable) (routine-update):
+ Build-Depends: Replace dependency on transitional package libfreetype6-dev
with replacement libfreetype-dev (= 2.10.4+dfsg-1+deb11u1).
-- Steffen Moeller <moeller@debian.org> Wed, 17 Jul 2024 18:54:40 +0200
pymol (2.5.0+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* No tab in license text (routine-update)
* Use secure URI in Homepage field.
* Remove obsolete field Name from debian/upstream/metadata (already present in
machine-readable debian/copyright).
* Replace use of deprecated $ADTTMP with $AUTOPKGTEST_TMP.
* Apply multi-arch hints.
+ pymol-data: Add Multi-Arch: foreign.
* Replace imp by importlib in wrapper script
Closes: #929700
* Deactivate debian/patches/02_test-suite.patch since it is unused
* There is no need to recreate debian/pymol.launch per package build time
since we now stick to Python3
* Skip test importing.py
* Sort testscript and print command before execution to simplify debugging
of autopkgtest
* Do not try to run upstream build-time testscript which was removed upstream
(neither at build time nor in autopkgtest)
* Exclude test /usr/share/pymol/examples/devel/importing.py which has some
issue for the moment.
-- Andreas Tille <tille@debian.org> Wed, 15 Dec 2021 16:51:43 +0100
pymol (2.4.0+dfsg-3) unstable; urgency=medium
* Team upload
[ Matthias Klose ]
* Enable building with pie again (Closes: #986253)
[ Sebastian Ramacher ]
* Replace libglew1.5-dev with libglew-dev (Closes: #995699)
-- Graham Inggs <ginggs@debian.org> Wed, 06 Oct 2021 08:18:01 +0000
pymol (2.4.0+dfsg-2) unstable; urgency=medium
* debian/tests/control: Add scenes2movie to list of skipped scripts (Closes:
#987963).
-- Michael Banck <mbanck@debian.org> Sat, 22 May 2021 13:26:27 +0200
pymol (2.4.0+dfsg-1) unstable; urgency=medium
* New upstream release.
* debian/patches/02_test-suite.patch: Refreshed.
* debian/patches/22_fix_pymol_import.patch: Likewise.
* debian/patches/27_fix_pymol_path_in_setup.patch: Likewise.
* debian/patches/31_fix_format-security.patch: Likewise.
* debian/patches/33_fix_relative_paths_in_example_scripts.patch: Likewise.
* debian/patches/40_mstop_movies.patch: Likewise.
* debian/patches/28_no_data_install_in_python_path.patch: Updated.
* debian/patches/32_fix_spelling_lintian_warnings.patch: Likewise.
* debian/patches/60_py3_test.patch: Removed, no longer needed.
* debian/control (Build-Depends): Added libnetcdf-dev
* debian/pymol-data.install: Remove scripts directory, no longer present
upstream.
-- Michael Banck <mbanck@debian.org> Sun, 10 Jan 2021 21:46:57 +0100
pymol (2.3.0+dfsg-1) unstable; urgency=medium
* Team Upload.
* New upstream release.
- drop patches applied upstream.
- refresh patches.
* Stop building the Python 2 package python-pymol (Closes: #937481).
* Port the test runner to Python 3.
* Update to debhelper-compat (= 12).
* Update Standards-Version to 4.4.0 (no changes required).
* Mark autopkgtest tests as superficial since they don't test much at
present.
-- Stuart Prescott <stuart@debian.org> Tue, 17 Sep 2019 01:34:28 +1000
pymol (2.2.0+dfsg-4) unstable; urgency=medium
* Team Upload.
* Ensure that arch:all package can be built separately.
* Switch the pymol binary package to be arch:all following the split
of the python modules off to their own packages.
-- Stuart Prescott <stuart@debian.org> Wed, 02 Jan 2019 12:15:06 +1100
pymol (2.2.0+dfsg-3) unstable; urgency=medium
* Team Upload.
* Upload Qt5 GUI to unstable for wider testing.
* Merge changes from previous NMU 2.2.0+dfsg-1.1.
* Update Standards-Version to 4.3.0 (no changes required).
* Remove unneeded Suggests: python3-tk from pymol-data.
* Fix up autopkgtest tests for Qt5 GUI.
-- Stuart Prescott <stuart@debian.org> Mon, 31 Dec 2018 17:22:59 +1100
pymol (2.2.0+dfsg-2) experimental; urgency=medium
* Team Upload.
* Split package for Python 2 and Python 3 modules (Closes: #897431).
* Use Qt5 GUI.
* Update Standards-Version to 4.2.1 (no changes required).
-- Stuart Prescott <stuart@debian.org> Fri, 02 Nov 2018 13:10:34 +1100
pymol (2.2.0+dfsg-1.1) unstable; urgency=medium
* Team upload
* Fix for FTBFS with glew 2.1, needed for glew/hdf5 transitions.
Closes: #915112
-- Alastair McKinstry <mckinstry@debian.org> Fri, 07 Dec 2018 12:29:01 +0000
pymol (2.2.0+dfsg-1) unstable; urgency=medium
[ Stuart Prescott ]
* Team upload.
[ Michael Banck ]
* New upstream release.
* debian/watch: Update to github.
* debian/patches/32_fix_spelling_lintian_warnings.patch: Refreshed.
* debian/control (Build-Depends): Added libglm-dev.
-- Stuart Prescott <stuart@debian.org> Fri, 02 Nov 2018 11:43:02 +1100
pymol (2.1.0+dfsg-3) unstable; urgency=medium
* Team upload.
* Force use of Tk GUI to prevent crashes with Qt GUI (Closes: #902348).
-- Stuart Prescott <stuart@debian.org> Fri, 29 Jun 2018 00:30:41 +1000
pymol (2.1.0+dfsg-2) unstable; urgency=medium
* Team upload.
* Fix tests so that they do not loop forever (Closes: #897191).
* Whitespace cleanup of changelog to shut up lintian.
* Don't run the tests at build time if nocheck is set.
* Add symlink to examples in /usr/share/doc/pymol.
* Update build system to pybuild and simplify d/rules.
-- Stuart Prescott <stuart@debian.org> Thu, 03 May 2018 01:46:13 +1000
pymol (2.1.0+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.1.4
* debhelper 11
-- Andreas Tille <tille@debian.org> Fri, 27 Apr 2018 09:41:57 +0200
pymol (1.8.4.0+dfsg-1) unstable; urgency=medium
* Team upload
* New upstream version
-- Andreas Tille <tille@debian.org> Thu, 20 Oct 2016 17:33:21 +0200
pymol (1.8.2.1+dfsg-1.2) unstable; urgency=medium
* Non-maintainer upload.
* Avoid bad installation of the data files into pymol binary
(Closes: #836005)
-- Gianfranco Costamagna <locutusofborg@debian.org> Wed, 31 Aug 2016 15:28:27 +0200
pymol (1.8.2.1+dfsg-1.1) unstable; urgency=medium
* Non-maintainer upload.
* Fix FTBFS with dpkg-buildpackage -A (Closes: #835224)
-- Gianfranco Costamagna <locutusofborg@debian.org> Mon, 29 Aug 2016 10:47:59 +0200
pymol (1.8.2.1+dfsg-1) unstable; urgency=medium
[ Tatiana Malygina ]
* Team upload.
* New upstream version
Closes: #777619
* temporary commented patches 22_fix_pymol_import.patch
and 31_fix_format-security.patch,
fixed 32_fix_spelling_lintian_warnings.patch
* updated 31_fix_format-security.patch
* updated 32_fix_spelling_lintian_warnings.patch
* add smoke test to check if various pymol scripts end up with
'PyMOL: normal program termination.' message, add debian/README.test,
mention them in debian/pymol.docs.
* add debian/pymol.lintian-overrides to override spelling-error-in-binary
(see comment in debian/pymol.lintian-overrides for details)
* add libpng12-0 (= 1.2.50-2+deb8u2) dependency to debian/control
* update to debhelper 9, add hardening.
Since pymol produces shared libraries, not executable, -pie compiler/linker
options are turned off.
This also eliminates hardening-no-bindnow lintian warnings.
* updated 22_fix_pymol_import.patch
* fix lintian spelling warnings
* run cme fix dpkg-control
* add simple test
* fix executable-not-elf-or-script lintian warning - by adding
override_dh_fixperms to debian/rules
* New upstream release
* Move data files to pymol-data package (except examples).
Closes: #506202
* fixed debian/pymol.install to copy required files to usr/lib dir (this
became broken when package was split to pymol and pymol-data)
* fixed debian/pymol.lintian-overrides to handle architecture-dependent
library name
* install examples/ and tests/ directories with pymol-data to make them
available in manual tests
* add more strict rules in debian/tests/call-pymol-scripts - to fail when
certain error patterns present in pymol output (and coloring for output)
* small fix in debian/tests/call-pymol-scripts - don't use symlinks any more
* add patch to fix relative paths in example scripts
* fix typos, fixed debian/pymol.lintian-overrides
* add python-opengl as a dependency to pymol-data (this package is used in
several example scripts)
* fixes in debian/tests/call-pymol-scripts to allow skip some scripts
invocation
* update in debian/patches/33_fix_relative_paths_in_example_scripts.patch
* debian/pymol-data.install: now install only correct scripts from examples/
* fixes in debian/tests/control: now test only correct scripts (all skipped
example scripts will be described in README.Debian).
* updated description in debian/README.test and debian/README.Debian,
updated debian/pymol-data.install,
add python-opengl dependency to debian/tests/control
* add patch to use fetch instead of load in scripts when necessary, add
several examples to debian/pymol.data.install, update debian/README.Debian
and debian/tests/control
* cleaned up debian/examples: examples are located in /usr/share/pymol
* fix package-contains-empty-directory usr/share/chempy/ lintian warning,
cleaned up debian/tests/control
* add keywords and basic localization to Russian in debian/pymol.desktop
* mention github repo with examples from pymol wiki in debian/README.test
* debian/copyright: add UIUC Open Source license, fix in BSD-3-clause (used
as a license for 2 different copyright holders, one of them was mentioned
in text)
* add TODO remark
* add font licenses for layer1/Font* files
[ Andreas Tille ]
* Moved packaging from SVN to Git
* Move debian/upstream to debian/upstream/metadata
* DEP5 copyright
* Remove menu file
-- Tatiana Malygina <merlettaia@gmail.com> Wed, 10 Aug 2016 21:03:01 +0300
pymol (1.7.2.1-2) unstable; urgency=medium
* debian/patches/21_fix_png_batch_mode.patch: Removed, broke functionality.
-- Michael Banck <mbanck@debian.org> Sat, 13 Jun 2015 15:38:14 +0200
pymol (1.7.2.1-1) unstable; urgency=low
* New upstream point release.
* debian/patches/31_fix_format-security.patch: New patch, fixes FTBFS bug
with -Werror=format-security (closes: #759860).
-- Michael Banck <mbanck@debian.org> Sun, 14 Sep 2014 16:35:14 +0200
pymol (1.7.1.3-1) unstable; urgency=low
* New upstream point release.
* debian/patches/30_pymol_data_path.patch: Removed: applied upstream.
-- Michael Banck <mbanck@debian.org> Wed, 21 May 2014 17:54:04 +0200
pymol (1.7.0.0-1) unstable; urgency=low
* New upstream release.
* debian/patches/30_pymol_data_path.patch: New patch, uses PYMOL_DATA instead
of PYMOL_PATH environment variable for data file location.
-- Michael Banck <mbanck@debian.org> Mon, 20 Jan 2014 17:43:21 +0100
pymol (1.6.0.0-1.1) unstable; urgency=low
* Non-maintainer upload.
* Replaced the obsolete tk8.4-dev by tk-dev in build dependencies.
-- Sergei Golovan <sgolovan@debian.org> Thu, 03 Oct 2013 20:45:06 +0400
pymol (1.6.0.0-1) unstable; urgency=low
* New upstream prelease.
- Fixes session saving/loading (closes: #668586).
[ Michael Banck ]
* debian/patches/11_fix__cmd_import.patch: Removed, no longer needed.
* debian/patches/26_subversion_updates.patch: Likewise.
* debian/pymol.install: Install data and scripts directories under
/usr/share/pymol, as intended by upstream.
* debian/pymol.launch.in: Updated for new data path location.
* debian/patches/05_examples_data_path.patch: Removed, no longer needed.
* debian/patches/09_chempy_data_path.patch: Likewise.
* debian/patches/13_activate_vmd_plugin.patch: Likewise.
* debian/patches/17_cmyk_png_data_path.patch: Likewise.
* debian/patches/19_blosum_matrix_path.patch: Likewise.
* debian/patches/20_output_license_terms.patch: Likewise.
* debian/patches/25_ignore_setup_clean_errors.patch: Likewise.
* debian/rules (override_dh_auto_clean): Do not abort on failure and remove
* redundant call to setup.py.
* debian/patches/22_fix_pymol_import.patch: Change the value of $PYMOL_PATH
to the one found by find_module('pymol').
* debian/patches/28_no_data_install_in_python_path.patch: New patch, skips
installation of the data (and examples, test) directories into the pymol
path.
* debian/patches/29_fix_path_to_splash.patch: New patch, changes search path
for splash image from $PYMOL_PATH to $PYMOL_DATA.
* debian/patches/series: Disable 24_autodock_plugin.patch for now, as it does
work currently.
* debian/control (Standards-Version): Bumped to 3.9.4.
[ Daniel Leidert ]
* debian/control (Uploaders): Removed myself.
(Depends): Added python-numpy (LP: #1076104).
(Suggests): Added chemical-mime-data.
* debian/gnome-pymol.desktop: Dropped unused file.
* debian/pymol.desktop (MimeType, Exec): Additions (LP: #1087265).
* debian/pymol.launch.in: Environmental path variables (LP: #925445).
* debian/upstream: Minor additions.
-- Debichem Team <debichem-devel@lists.alioth.debian.org> Thu, 08 Aug 2013 20:32:10 +0200
pymol (1.5.0.1-2) unstable; urgency=low
* debian/patches/26_subversion_updates.patch: New patch, includes the fixes
from subversion since 1.5.0.1 up to revision 3996.
* debian/upstream: New file.
* debian/pymolRef.tex: Updated with latest version from
http://www.pymolwiki.org/index.php/CheatSheet.
-- Michael Banck <mbanck@debian.org> Wed, 02 May 2012 18:11:37 +0200
pymol (1.5.0.1-1) experimental; urgency=low
* New upstream release.
* debian/patches/patches/13_activate_vmd_plugin.patch: Refreshed.
* debian/patches/19_blosum_matrix_path.patch: Refreshed.
* debian/patches/23_bts576210_FTBFS_ia64.patch: Removed, no longer needed.
* debian/patches/25_ignore_setup_clean_errors.patch: New patch, includes a
failure if setup.py is run with "clean" as argument.
* debian/rules (override_dh_clean): Remove some new leftover files.
* debian/patches/patches/13_activate_vmd_plugin.patch: Revert some changes
since 1.4.1 which make the molfile plugin fail to build.
-- Michael Banck <mbanck@debian.org> Sun, 19 Feb 2012 21:45:17 +0100
pymol (1.4.1-3) unstable; urgency=low
* debian/control (Build-Depends): Dropped dpatch in favour of source
format 3.0 (quilt).
* debian/pymol.pyremove: Added. Remove web/*__init__.py to fix file conflict
(closes: #650756).
* debian/rules: Remove dpatch addon call. Disable verbose output.
(override_dh_clean): Don't remove test/pymol-test; quilt will do.
* debian/README.source: Dropped obsolete file.
* debian/source/lintian-overrides: Ditto.
* debian/patches/02_test-suite.dpatch: Renamed to
debian/patches/02_test-suite.patch.
* debian/patches/03_povray.dpatch: Renamed to
debian/patches/03_povray.patch.
* debian/patches/05_examples_data_path.dpatch: Renamed to
debian/patches/05_examples_data_path.patch.
* debian/patches/09_chempy_data_path.dpatch: Renamed to
debian/patches/09_chempy_data_path.patch.
* debian/patches/11_fix__cmd_import.dpatch: Renamed to
debian/patches/11_fix__cmd_import.patch.
* debian/patches/13_activate_vmd_plugin.dpatch: Renamed to
debian/patches/13_activate_vmd_plugin.patch.
* debian/patches/17_cmyk_png_data_path.dpatch: Renamed to
debian/patches/17_cmyk_png_data_path.patch.
* debian/patches/19_blosum_matrix_path.dpatch: Renamed to
debian/patches/19_blosum_matrix_path.patch.
* debian/patches/20_output_license_terms.dpatch: Renamed to
debian/patches/20_output_license_terms.patch.
* debian/patches/21_fix_png_batch_mode.dpatch: Renamed to
debian/patches/21_fix_png_batch_mode.patch.
* debian/patches/22_fix_pymol_import.dpatch: Renamed to
debian/patches/22_fix_pymol_import.patch.
* debian/patches/23_bts576210_FTBFS_ia64.dpatch: Renamed to
debian/patches/23_bts576210_FTBFS_ia64.patch.
* debian/patches/24_autodock_plugin.dpatch: Renamed to
debian/patches/24_autodock_plugin.patch.
* debian/patches/00list: Renamed to debian/patches/series and adjusted.
-- Daniel Leidert (dale) <daniel.leidert@wgdd.de> Sun, 04 Dec 2011 22:53:06 +0100
pymol (1.4.1-2) unstable; urgency=low
* For whatever reason (dh compat level or dh_python2 usage) dependencies
for all .so files are now calculated (closes: #611436).
* debian/compat: Increased dh compatibility level to 7.
* debian/control: Added X-Python-Version and XB-Python-Version field.
(Standards-Version): Bumped to 3.9.2.
(Build-Depends): Added dpatch version for debhelper addon.
spelling-error-in-description
(Vcs-Browser): Point to real location.
(Description): Fixed spelling-error-in-description.
* debian/pymol.docs: Added.
* debian/pymol.manpages: Ditto.
* debian/rules: Rewritten for debhelper 7. Make use of python2 and dpatch
debhelper addons. Install shader files (closes: #644394).
* debian/source/format: Added for source format 3.0.
* debian/source/lintian-overrides: Temporarily added as long as we stay with
dpatch here.
-- Daniel Leidert (dale) <daniel.leidert@wgdd.de> Wed, 30 Nov 2011 21:51:42 +0100
pymol (1.4.1-1) unstable; urgency=low
* New upstream release.
[ Daniel Leidert ]
* debian/watch: Adjusted to catch the re-introduced tarball download.
-- Michael Banck <mbanck@debian.org> Sat, 27 Aug 2011 19:17:05 +0200
pymol (1.4~beta1-1) experimental; urgency=low
[ Michael Banck ]
* New upstream beta release.
* debian/patches/13_activate_vmd_plugin: Refreshed.
* debian/patches/18_enable_gl_shaders.dpatch: Removed, no longer needed.
* debian/control (Build-Depends): Added libglew1.5-dev.
-- Michael Banck <mbanck@debian.org> Sun, 17 Apr 2011 00:26:31 +0200
pymol (1.3r2-1) unstable; urgency=low
* New upstream release.
* debian/patches/13_activate_vmd_plugin: Removed, no longer needed.
* debian/patches/19_blosum_matrix_path.dpatch: Refreshed.
* debian/patches/24_autodock_plugin.dpatch: New patch, includes the
autodock plugin from Daniel Seeliger.
* debian/patches/00list: Adjusted.
* debian/control (Standards-Version): Bumped to 3.9.1.
* debian/control (Depends): Added ${misc:Depends}.
-- Michael Banck <mbanck@debian.org> Sat, 16 Apr 2011 23:12:01 +0200
pymol (1.2r2-1.1) unstable; urgency=low
* Non-maintainer upload.
* debian/patches/23_bts576210_FTBFS_ia64.dpatch
- fix a FTBFS on ia64, working aroung a bug in GCC; thanks to Jakub Wilk for
the report and patch; Closes: #576210
-- Sandro Tosi <morph@debian.org> Mon, 10 May 2010 09:34:51 +0200
pymol (1.2r2-1) unstable; urgency=low
* New upstream release. This upload is dedicated to the pymol founder and
lead developer Warren DeLano, who passed away on November 3rd, 2009.
[ Daniel Leidert (dale) ]
* debian/patches/18_enable_gl_shaders.dpatch: Refreshed.
[ Michael Banck ]
* debian/patches/21_fix_png_batch_mode.dpatch: New patch, fixes PNG
generation in batch mode, by Vincent Fourmond (closes: #560412).
* debian/patches/22_fix_pymol_import.dpatch: New patch, fixes importing of
pymol module from python (closes: #556878).
-- Michael Banck <mbanck@debian.org> Sun, 27 Dec 2009 18:55:26 +0100
pymol (1.2r1-3) unstable; urgency=low
* debian/pymol.launch.in: Don't execute the package (closes: #550721).
Otherwise package execution fails with python 2.6 and 3.
-- Daniel Leidert (dale) <daniel.leidert@wgdd.de> Wed, 04 Nov 2009 00:17:15 +0100
pymol (1.2r1-2) unstable; urgency=low
* debian/control (Build-Depends): Added python for python.mk.
* debian/pymol.launch.in: Replace $* with $@ and add a construct to replace
the test (closes: #549268).
* debian/rules: Include python.mk.
(install): Use --install-layout=deb via py_setup_install_args (closes:
#547871).
* debian/patches/02_test-suite.dpatch: Adjusted.
- test/pymol-test: Include /usr/lib/pythonX.Y/dist-packages too.
* debian/patches/20_output_license_terms.dpatch: Added.
- Show the Debian package copyright file when using 'Output License
Terms', which fully reproduces the LICENSE file.
* debian/patches/00list: Adjusted.
-- Daniel Leidert (dale) <daniel.leidert@wgdd.de> Sat, 03 Oct 2009 01:04:21 +0200
pymol (1.2r1-1) unstable; urgency=low
* New upstream release.
[ Michael Banck ]
* debian/patches/06_remove_shebang.dpatch: Removed, applied upstream.
* debian/patches/13_activate_vmd_plugin.dpatch: Updated.
* debian/patches/14_script_not_executable.dpatch: Removed, applied upstream.
* debian/patches/16_pymem_del.dpatch: Likewise.
* debian/patches/17_cmyk_png_data_path.dpatch: Updated.
* debian/pymol.launch.in: Add quotes around $* to not fail on filenames with
whitespace in them (closes: #506967).
* debian/rules (clean): Removed bashism (closes: #535410).
* debian/control (Homepage): Updated.
* debian/control (Uploaders): Removed Li Daobing.
* debian/patches/18_enable_gl_shaders.dpatch: New patch, enable OpenGL
shaders, taken from upstream.
* debian/pymol.launch.in: Do not add $* to command line if empty, avoiding a
traceback on startup.
* debian/rules (GCC43_ICES_HERE): Removed.
* debian/control (Build-Depends): Removed g++-4.2 on arm and armel
(closes: #533794).
* debian/control (Build-Depends): Replaced glutg3-dev with freeglut3-dev
(closes: #543702).
[ Daniel Leidert ]
* debian/control: Added DM-Upload-Allowed field.
(Standards-Version): Bumped to 3.8.3.
(Vcs-Svn): Fixed vcs-field-uses-not-recommended-uri-format.
(Description): Fixed typo (thanks to lintian).
* debian/pymol-32.xpm: Renamed to debian/pymol.xpm.
* debian/pymol.applications,
debian/gnome-pymol.keys,
debian/gnome-pymol.mime: Dropped. This is for GNOME<=2.4.
* debian/pymol.dirs,
debian/pymol.install: Added for debhelper-based build system.
* debian/pymol.doc-base: Added to register reference card.
* debian/pymol.menu (icon): Fixed after rename.
* debian/pymol.launch.in: Fixed PYMOL_PATH (closes: #529417). Make this
self-detecting (closes: #516040).
* debian/rules: Reworked to be more debhelper-like and clean. Permission
fixes have been dropped (fixed upstream).
* debian/README.source: Added to comply to policy.
* debian/patches/04_Rules.make.dpatch: Dropped.
* debian/patches/05_examples_data_path.dpatch: Adjusted to use PYMOL_DATA.
* debian/patches/19_blosum_matrix_path.dpatch: Added.
- modules/pymol/fitting.py: Search for the matrices in the correct path
(closes: #511810).
-- Michael Banck <mbanck@debian.org> Sat, 19 Sep 2009 13:43:04 +0200
pymol (1.1-1) unstable; urgency=low
* New upstream release.
[ Daniel Leidert (dale) ]
* debian/control (Uploaders): Added myself.
* debian/pymol.1: Added basic man-page for pymol (closes: #148399).
* debian/rules (binary-arch): Install man-page for pymol.
* debian/patches/11_fix__cmd_import.dpatch: Added a short description based
on the changelog entry to satisfy lintian.
[ Michael Banck ]
* debian/patches/17_cmyk_png_data_path.dpatch: Fix the location lookup for
cmyk.png (closes: #490067).
* debian/pymolRef.tex: New file, taken from pymol community wiki
http://www.pymolwiki.org.
* debian/copyright: Add GPLv2 notice for debian/pymolRef.tex.
* debian/control (Build-Depends): Added texlive-latex-base. Replaced
python-numeric with python-numpy.
* debian/rules (build): Run pdflatex to create reference card from
debian/pymolRef.tex.
* (install): Copy it to $(BUILD_DIR)/usr/share/doc/pymol/pymol-ref-card.pdf.
* (clean): Remove pdflatex created files.
* debian/patches/12_align_matrix.dpatch: Removed, applied upstream.
* debian/patches/15_fix_scripting_mode.dpatch: Likewise.
* debian/patches/13_activate_vmd_plugin.dpatch: Refreshed.
* debian/rules (install): Create $(BUILD_DIR)/usr/share/doc/pymol.
* debian/control (Description): Updated.
* debian/README.Debian: Removed entry from 19 May 2002.
-- Michael Banck <mbanck@debian.org> Wed, 23 Jul 2008 03:42:15 +0200
pymol (1.1~beta3-3) unstable; urgency=low
[ LI Daobing ]
* debian/pymol.desktop: fix lintian info
desktop-entry-contains-encoding-key.
[ Michael Banck ]
* debian/control (Build-Depends): Added g++-4.2 on arm, armel.
* debian/rules: Use g++-4.2 on arm, armel; by Adeodato Simo;
closes: #478034.
-- Michael Banck <mbanck@debian.org> Sat, 26 Apr 2008 16:07:33 +0200
pymol (1.1~beta3-2) unstable; urgency=low
* debian/patches/16_pymem_del.dpatch: Fix usage of different memory
APIs; by Barry deFreese; closes: #468989.
-- Michael Banck <mbanck@debian.org> Sun, 16 Mar 2008 14:26:06 +0100
pymol (1.1~beta3-1) unstable; urgency=low
* New upstream prerelease.
[ Michael Banck ]
* debian/patches/15_fix_scripting_mode.dpatch: Fix the scripting
(command-line) mode; by Anders Norgaard; closes: #459644.
[ LI Daobing ]
* debian/control:
- add me to uploaders.
- bump standards version to 3.7.3, nothing need change.
* debian/rules: remove build directory and other two files in clean.
(Closes: #442706)
* add a new 32x32 xpm icon:
- debian/pymol-32.xpm: added. (resize from debian/pymol.xpm)
- debian/rules: install pymol-32.xpm.
- debian/pymol.menu: use 32x32 xpm icon.
* debian/rules: don't install empty directory.
* fix lintian warning: script-not-executable
- debian/patches/14_script_not_executable.dpatch: added.
- debian/patches/00list: updated.
-- Michael Banck <mbanck@debian.org> Fri, 15 Feb 2008 20:38:42 +0100
pymol (1.0r2-1) unstable; urgency=low
* New upstream release.
[ Daniel Leidert ]
* debian/control: Added Homepage and XS-Vcs-* fields. Added get-orig-source
target to retrieve source from SVN.
(Build-Depends): Raised debhelper compat level.
* debian/pymol.menu (section): Menu section transition.
* debian/rules: DH_COMPAT is obsolete. Better use debian/compat. Raised
level to debhelper 5.
* debian/watch: Fixed. Upstream doesn't provide tarballs anymore, so we
check their SVN.
[ Michael Banck ]
* debian/patches/13_activate_vmd_plugin.dpatch: Build the VMD plugin,
by Martin Hoefling.
* debian/control (Maintainer): Change to Debichem Team.
-- Michael Banck <mbanck@debian.org> Fri, 12 Oct 2007 15:47:49 +0200
pymol (1.0-1) unstable; urgency=low
* New upstream release.
[ Daniel Leidert ]
* debian/watch: Added.
[ LI Daobing ]
* debian/rules: lintian doesn't like "-$(MAKE) clean", see bug#325372
[ Michael Banck ]
* debian/README.Debian: Remove link to obsolete manual and mention
http://www.pymolwiki.org/ as documenation source.
* debian/rules (dh_installchangelogs): CHANGES got renamed to ChangeLog.
* debian/rules (dh_installdocs): Include AUTHORS.
* debian/patches/05_examples_data_path.dpatch: Updated.
* debian/pymol.launch.in: Remove quotes around $*; closes: #409188.
* debian/rules (clean): Don't fail if Makefile is not present.
* debian/patches/12_align_matrix.dpatch: New patch to fix patch for
align command. Based on a patch by Charles Plessy and further input
by Thomas Gaillard; closes: #385550.
-- Michael Banck <mbanck@debian.org> Thu, 5 Jul 2007 13:13:00 +0200
pymol (0.98+0.99rc8-1) unstable; urgency=low
* New upstream release candidate.
[ Michael Banck ]
* debian/rules (install): Install builder ring bitmaps into
/usr/share/pymol/pmg_tk/bitmaps/builder; closes: #422229.
* debian/patches/09_chempy_data_path.dpatch: Updated.
* debian/patches/05_examples_data_path.dpatch: Likewise.
* debian/patches/09_chempy_data_path.dpatch: Updated to fix the
pathname for the mutagenesis wizard; closes: #410108.
[ LI Daobing ]
* debian/pymol.desktop: fix warning for desktop-file-validate.
-- Michael Banck <mbanck@debian.org> Tue, 8 May 2007 18:02:59 +0200
pymol (0.98+0.99rc6-2) unstable; urgency=low
* debian/control (Recommends): Added apbs.
* Sync with Ubuntu; closes: #379508, #378825.
* Acknowledge NMU; closes: #380910.
-- Michael Banck <mbanck@debian.org> Tue, 26 Sep 2006 00:08:41 +0200
pymol (0.98+0.99rc6-1.1) unstable; urgency=low
* Non-maintainer upload.
* Update packate to the last python policy (Closes: 380910):
+ use dh_pysupport.
+ add 11_fix__cmd_import.dpatch to fix an import that does not behaves
well.
+ adapt the wrapper to the new path's.
* Bump Standards-Version to 3.7.2.
* Bump DH_COMPAT to 4.
* Fix more files that have wrong executable bits set.
-- Pierre Habouzit <madcoder@debian.org> Wed, 30 Aug 2006 11:09:00 +0200
pymol (0.98+0.99rc6-1ubuntu1) edgy; urgency=low
* Re-merge with Debian
-- Barry deFreese <bddebian@comcast.net> Sun, 23 Jul 2006 17:39:15 -0400
pymol (0.98+0.99rc6-1) unstable; urgency=low
* New upstream release candidate.
* debian/patches/02_test-suite.dpatch: Resync.
* debian/patches/03_povray.dpatch: Likewise.
* debian/patches/05_examples_data_path.dpatch: Likewise.
* debian/patches/09_chempy_data_path.dpatch: Likewise.
* debian/control (Build-Depends): Added libfreetype6-dev.
-- Michael Banck <mbanck@debian.org> Fri, 30 Jun 2006 02:05:00 +0200
pymol (0.98-1ubuntu2) dapper; urgency=low
* Merged existing desktop files and updated to current freedestkop
standards. Closes Ubuntu #36435
-- Zygmunt Krynicki <zkrynicki@gmail.com> Sat, 25 Mar 2006 01:22:38 +0100
pymol (0.98-1ubuntu1) breezy; urgency=low
* Resynchronise with Debian.
* Sponsored for Barry DeFreese (Closes: Ubuntu #12487)
-- Stephan Hermann <sh@sourcecode.de> Sun, 24 Jul 2005 11:43:59 +0200
pymol (0.98-1ubuntu2) dapper; urgency=low
* Merged existing desktop files and updated to current freedestkop
standards. Closes Ubuntu #36435
-- Zygmunt Krynicki <zkrynicki@gmail.com> Sat, 25 Mar 2006 01:22:38 +0100
pymol (0.98-1ubuntu1) breezy; urgency=low
* Resynchronise with Debian.
* Sponsored for Barry DeFreese (Closes: Ubuntu #12487)
-- Stephan Hermann <sh@sourcecode.de> Sun, 24 Jul 2005 11:43:59 +0200
pymol (0.98-1) unstable; urgency=low
* The 'Fixing Ubunt^W^WPreparing for Python Transition' Release.
* New upstream release.
* debian/patches/03_povray.dpatch: Updated.
* debian/rules (install): Create application-registry directory.
* debian/patches/02_test-suite.dpatch (pymol-test): Do not
hardcode python version.
* debian/pymol.launch: Renamed to ...
* debian/pymol.launch.in: ... this, and generalize occurances of
python versions to @PYTHON_VERSION@.
* debian/rules (debian/pymol.launch): New rule, processing
debian/pymol.launch.in.
* debian/rules (build-stamp): Depend on debian/pymol.launch.
-- Michael Banck <mbanck@debian.org> Sun, 3 Jul 2005 12:56:15 +0200
pymol (0.97-3) unstable; urgency=low
* debian/control (Depends): Use ${python:Depends} instead of
exlicitely specifying the current default python version.
* (Build-Depends): Use python-dev and python-numeric rather than
specific versions.
* debian/pymol.dirs: Removed.
* debian/rules (install): Grouped creation of directories together
and create missing directories under $(BUILD_DIR)/usr/share as
well as $(BUILD_DIR)/usr/bin.
-- Michael Banck <mbanck@debian.org> Tue, 5 Apr 2005 13:14:24 +0200
pymol (0.97-2) unstable; urgency=low
* debian/patches/09_chempy_data_path.dpatch: Include relevant chempy
changes from the old 01_data_path.dpatch and adopt it slightly to
use CHEMPY_PATH. Reported by Christoph Scheurer.
* debian/pymol.launch: Use $CHEMPY_PATH instead of $CHEMPY_DATA_PATH.
-- Michael Banck <mbanck@debian.org> Sat, 8 Jan 2005 15:50:45 +0100
pymol (0.97-1) unstable; urgency=low
* New upstream release.
* debian/patches/10_png_includes: Dropped, included upstream.
* debian/patches/00list (10_png_includes.dpatch): Removed.
* debian/control (Build-Depends): Added python; closes: #261040.
* debian/pymol.launch (PYMOL_PATH): New environment variable to work
around upstream breakage for the time being.
-- Michael Banck <mbanck@debian.org> Fri, 6 Aug 2004 03:02:32 +0200
pymol (0.95-1) unstable; urgency=low
* New upstream release.
* (layer0/MyPNG.c): Reorder #includes in MyPNG.c.
(10_png_includes.dpatch)
* debian/patches/00list (10_png_includes.dpatch): Added.
* debian/control (Build-Depends): Drop gcc-2.95 again, #229080 does
not show up anymore with th current gcc.
* debian/rules (CC): Removed.
-- Michael Banck <mbanck@debian.org> Wed, 7 Apr 2004 21:34:02 +0200
pymol (0.93-5) unstable; urgency=low
* debian/control (Build-Depends): Really only depend on gcc-2.95 on
ia64 and hppa; closes: #235709.
* debian/rules (PYMOL_PATH): New variable, to make sure the test-
suite is able to find its data files.
-- Michael Banck <mbanck@debian.org> Tue, 2 Mar 2004 15:20:32 +0100
pymol (0.93-4) unstable; urgency=low
* debian/rules: Only set CC=2.95 if not building for ia64 or hppa.
* debian/control: Do not Build-Depend on gcc-2.95 on ia64 and hppa;
closes: #235658.
-- Michael Banck <mbanck@debian.org> Mon, 1 Mar 2004 23:04:21 +0100
pymol (0.93-3) unstable; urgency=low
* debian/control (Build-Depends): Revert to gcc-2.95 to evade segmen-
tation faults when rendering lines with binaries built with gcc-3.x.
* debian/rules: Export CC=gcc-2.95; closes: #229080.
-- Michael Banck <mbanck@debian.org> Sun, 22 Feb 2004 11:12:13 +0100
pymol (0.93-2) unstable; urgency=low
* Fix environment-variable handling in modules/pymol/wizards/
mutagenesis.py; closes: #225590.
(09_chempy_data_path.dpatch)
* 05_examples_data_path.dpatch: Updated to find 1hpv.pdb for the
'Scripted Animation' demo.
-- Michael Banck <mbanck@debian.org> Sat, 3 Jan 2004 23:08:13 +0100
pymol (0.93-1) unstable; urgency=low
* New upstream release.
* debian/patches/00list (01_data_path.dpatch): Dropped, fixed
upstream.
(07_setup.py._opengl-libs.dpatch): Likewise.
(08_setup.py_missing_file.dpatch): Likewise.
* debian/pymol.launch: Changed $PYMOL_DATA_PATH to $PYMOL_DATA, in
order to follow upstream.
-- Michael Banck <mbanck@debian.org> Sun, 2 Nov 2003 12:06:10 +0100
pymol (0.90-2) unstable; urgency=low
* 01_data_path.dpatch:
- Factor out examples/-directory into 05_examples_data_path.dpatch.
- Factor out patch for modules/chempy/cex.py into
06_remove_shebang.dpatch.
* debian/pymol.launch: Pass command-line arguments to pymol through
the wrapper script, thanks to Gabor Tusnady for reporting this.
* setup.py (pyogl_libs): Added "GL","GLU","glut" and "png";
closes: #214026. (07_setup.py._opengl-libs.dpatch)
* (setup Extension): Added layer0/MemoryCache.c.
(08_setup.py_missing_file.dpatch)
-- Michael Banck <mbanck@debian.org> Sat, 4 Oct 2003 21:54:58 +0200
pymol (0.90-1) unstable; urgency=low
* 02_test-suite.dpatch: Updated for python2.3, thanks to Matt Kraai;
closes: #207706, #207711
* 04_Rules.make.dpatch: Activated
* debian/rules: Remove Rules.make linking/removing, handled by
dpatch now
-- Michael Banck <mbanck@debian.org> Mon, 1 Sep 2003 19:16:02 +0200
pymol (0.90-0.1) unstable; urgency=low
* NMU
* New upstream release.
* Update for python2.3 (closes: #206302).
-- Matthias Klose <doko@debian.org> Thu, 28 Aug 2003 21:04:16 +0200
pymol (0.88-1) unstable; urgency=low
* New upstream release; closes: #196159
* debian/pymol.menu: Moved menu entry from Math to Science section
* modules/pymol/povray.py: Fixed command-line again
* debian/control, debian/rules: Switch to dpatch
-- Michael Banck <mbanck@debian.org> Mon, 16 Jun 2003 18:16:41 +0200
pymol (0.86-3) unstable; urgency=low
* renamed said hacked pymol script to test/pymol-test
* debian/rules: make test/pymol-test executable
* modules/chempy/cex.py: Removed !# from top, this is no script
as far as pymol is concerned
-- Michael Banck <mbanck@debian.org> Mon, 13 Jan 2003 17:36:24 +0100
pymol (0.86-2) unstable; urgency=low
* test/run: Fixed test-suite to import the pymol modules under
debian/pymol by providing a hacked pymol script in test/
-- Michael Banck <mbanck@debian.org> Mon, 13 Jan 2003 14:36:48 +0100
pymol (0.86-1) unstable; urgency=low
* New upstream release; closes: #175881
- Patch for pmw got applied upstream; closes: #160584
- Hacked around $PYMOL_PATH once more in various places
- Followed Upstream's layout of the data a bit by using
/usr/share/pymol and /usr/share/chempy along with their
subdirectories respectively
* test/run: display the diff in case the test failed
* debian/rules: Use setup.py in build: and clean: target now
* debian/control: Build with libpng12-0-dev now
-- Michael Banck <mbanck@debian.org> Mon, 13 Jan 2003 01:16:35 +0100
pymol (0.82-2) unstable; urgency=low
* Switched to python-2.2; closes: #158931
* modules/pymol/povray.py: Changed PovRay-command
from x-povray to povray; closes: #151190
* debian/control: Bumped Standards-Version to 3.5.6.1
-- Michael Banck <mbanck@debian.org> Mon, 16 Sep 2002 01:11:57 +0200
pymol (0.82-1) unstable; urgency=low
* New upstream release
* Included pymol.xpm icon for menu-system,
fixing the menu entry; closes: #148400
* debian/control: Removed the Suggestion of pymol-doc for now as
the manual is out of date, documented its website in README.Debian
instead. Still no manpage, sorry
* Included splash.png in /usr/share/pymol and changed
modules/pymol/invocation.py accordingly
* debian/rules: Triggered the test-run
* modules/pmg_tk/Demo.py: Changed all cmd.load to look for the
.pdb-files in /usr/share/pymol/demo and installed those files
there; closes: #148153, #150070
* debian/control: Trimmed Build-Depends:
-- Michael Banck <mbanck@debian.org> Fri, 21 Jun 2002 00:45:18 +0200
pymol (0.80-3) unstable; urgency=low
* Actually compile shared libraries with -fPIC this time
-- Michael Banck <mbanck@debian.org> Sat, 25 May 2002 13:08:19 +0200
pymol (0.80-2) unstable; urgency=low
* Suggests: pymol-doc now
* Build shared libraries with -fPIC; closes: #148118
-- Michael Banck <mbanck@debian.org> Sat, 25 May 2002 09:35:51 +0200
pymol (0.80-1) unstable; urgency=low
* Initial Release; closes: #146024
* Moved data files to /usr/share/pymol
* Removed need for environment variables during execution, hardcoding
the paths for the moment
* Added a link to undocumented.1 for pymol.1 for the moment
-- Michael Banck <mbanck@debian.org> Sun, 19 May 2002 15:56:00 +0200