python-cobra (0.29.1-1) unstable; urgency=medium * Team upload. * New upstream version 0.29.1 * Add a patch to replace appdirs with platformdirs (Closes: #1067989) -- Alexandre Detiste Sun, 22 Sep 2024 14:54:56 +0200 python-cobra (0.29.0-3) unstable; urgency=medium * Team upload. * Remove reference to old python3-simplejson -- Alexandre Detiste Sat, 31 Aug 2024 00:49:17 +0200 python-cobra (0.29.0-2) unstable; urgency=medium * Team upload. * Build-Depends: s/libsbml5/libsbml5-dev/ Closes: #1069985 * Standards-Version: 4.7.0 (routine-update) -- Andreas Tille Sun, 28 Apr 2024 07:31:52 +0200 python-cobra (0.29.0-1) unstable; urgency=medium * Team upload. * New upstream version * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * remove extraneous dependency on python3-future Closes: #1058070 -- Andreas Tille Tue, 12 Dec 2023 16:57:31 +0100 python-cobra (0.26.3-2) unstable; urgency=medium * Team Upload. * Add patch to skip a test on 32-bit -- Nilesh Patra Wed, 20 Sep 2023 19:50:59 +0530 python-cobra (0.26.3-1) unstable; urgency=medium [ Étienne Mollier ] * Team upload. * New upstream version 0.26.3 * mathjax.patch: unfuzz. * do-not-seek-for-name.patch: unfuzz. * numpy_1.24.patch: delete; applied upstream. * d/control: remove dependency on obsolete package version. [ Nilesh Patra ] * Add Versioned B-D on optlang and swiglpk (Closes: #1042310) -- Nilesh Patra Fri, 15 Sep 2023 23:50:34 +0530 python-cobra (0.26.2-1) unstable; urgency=medium * Team upload. * New upstream version 0.26.2 * d/t/run-unit-test: avoid interfering with user's home. * d/python-cobra-data.lintian-overrides: update overrides. -- Étienne Mollier Sun, 05 Feb 2023 22:14:10 +0100 python-cobra (0.26.0-3) unstable; urgency=medium * Team upload. * Standards-Version: 4.6.2 (routine-update) * Fix AttributeError: module 'numpy' has no attribute 'float' Closes: #1027252 -- Andreas Tille Thu, 29 Dec 2022 13:03:36 +0100 python-cobra (0.26.0-2) UNRELEASED; urgency=medium * Team upload. -- Andreas Tille Thu, 29 Dec 2022 12:33:19 +0100 python-cobra (0.26.0-1) unstable; urgency=medium [ Étienne Mollier ] * Team upload. * New upstream version [ Andreas Tille ] * Build-Depends: python3-importlib-resources, python3-pytest-mock * Standards-Version: 4.6.1 (routine-update) * Ignore tests accessing remote locations * Fix watch file * Since python3-sbml5 can only deal with one Python3 version we restrict the test to default Python3 [ Nilesh Patra ] * Add patch to fix build -- Andreas Tille Thu, 24 Nov 2022 09:06:25 +0100 python-cobra (0.23.0-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.6.0 (routine-update) -- Andreas Tille Sat, 19 Feb 2022 08:53:02 +0100 python-cobra (0.22.1-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Mon, 23 Aug 2021 00:54:10 +0530 python-cobra (0.22.0-1) unstable; urgency=medium * Team Upload. * New upstream version 0.22.0 * Refresh patches -- Nilesh Patra Sun, 15 Aug 2021 19:37:28 +0530 python-cobra (0.21.0-1) unstable; urgency=high * Team upload. * New upstream version Closes: #978032 * Standards-Version: 4.5.1 (routine-update) * No tab in license text (routine-update) * watch file standard 4 (routine-update) * Build-Depends: python3-appdirs, python3-httpx, python3-pydantic, python3-rich * Versioned Build-Depends: python3-swiglpk (>= 4.65.1) -- Andreas Tille Tue, 09 Feb 2021 08:43:16 +0100 python-cobra (0.19.0-1) unstable; urgency=medium [ Andreas Tille ] * Team upload. * New upstream version * importlib_resources is not packaged for Debian thus ignore the test that needs this module * pytest.mark.skip did not worked that way. :-( * Really exclude tests requiring importlib_resources [ Nilesh Patra ] * Do not use python3-all (Closes: #972812) - sbml only builds its python extension for the default python * xfail test_show_versions which xpass during autopkgtest * Adapt data location with new version * Rename overrides -- Nilesh Patra Thu, 05 Nov 2020 22:12:34 +0530 python-cobra (0.18.1-2) unstable; urgency=medium * Exclude s390x from list of architectures since one test of the test suite fails on this architecture and there are no resources to track this down. Closes: #961224 -- Andreas Tille Sat, 08 Aug 2020 14:59:14 +0200 python-cobra (0.18.1-1) unstable; urgency=medium * Team upload. * New upstream version * debhelper-compat 13 (routine-update) -- Andreas Tille Sat, 08 Aug 2020 12:04:31 +0200 python-cobra (0.18.0-3) unstable; urgency=medium * Team upload * Use strong Depends instead of Recommends for several dependent modules Closes: #958538 -- Andreas Tille Tue, 12 May 2020 08:20:18 +0200 python-cobra (0.18.0-2) unstable; urgency=medium * Add missing Dependency from python3-sbml5 Closes: #958538 -- Andreas Tille Sun, 10 May 2020 21:04:49 +0200 python-cobra (0.18.0-1) unstable; urgency=medium * Team upload. * Drop outdated TODO * debhelper-compat 12 * Standards-Version: 4.5.0 (routine-update) * python3-sbml is now python2-sbml5 * d/control: - Build-Depends: python3-matplotlib Closes: #955656 - Use nocheck * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * debian/tests/control: s/ADTTMP/AUTOPKGTEST_TMP/ -- Andreas Tille Mon, 20 Apr 2020 19:11:22 +0200 python-cobra (0.14.2-2) unstable; urgency=medium * Team upload. * Set correct exit return for autopkgtest Closes: #912586 * Remove unused or redundant test dependencies -- Liubov Chuprikova Sat, 16 Feb 2019 20:08:53 +0100 python-cobra (0.14.2-1) unstable; urgency=medium * Team upload. * Do not install __pycache__ * debhelper 12 * Standards-Version: 4.3.0 * rename debian/tests/control.autodep8 to debian/tests/control * Enable python3-sbml * Build-/Test-Depends: python3-simplejson -- Andreas Tille Mon, 04 Feb 2019 15:12:37 +0100 python-cobra (0.14.1-1) unstable; urgency=medium * Team upload. * New upstream version * Versioned Depends: python3-pipdeptree (>= 0.13.1) (see https://github.com/opencobra/cobrapy/issues/780) Closes: #916706 * Add missing Recommends and Test-Depends -- Andreas Tille Tue, 18 Dec 2018 09:42:44 +0100 python-cobra (0.13.4-2) unstable; urgency=medium [ Matthias Klose ] * Team upload * Add python3-pytest-benchmark to the autopkg test dependencies. Closes: #912574 [ Andreas Tille ] * Secure URI in copyright format * Remove trailing whitespace in debian/changelog -- Andreas Tille Thu, 01 Nov 2018 14:00:10 +0100 python-cobra (0.13.4-1) unstable; urgency=medium * Team upload. [ Afif Elghraoui ] * New upstream version Closes: #904709 * Update dependencies * Refresh patch * Drop obsolete patch [ Andreas Tille ] * Standards-Version: 4.2.1 * Point Vcs-fields to Salsa * debhelper 11 * cme fix dpkg-control * Build-Depends: python*-requests, python*-pip * Drop failing test TestCobraFluxSampling.test_fixed_seed * Rename debian/tests/control to control.autodep8 * Testsuite: autopkgtest-pkg-python * Drop Python2 package since it has no reverse dependencies (as well as autopkgtest of Python2 version) * Build-Depends: python3-depinfo, python3-pipdeptree * Drop failing test: test_show_versions (needs further investigation with upstream) * Silence lintian about wrong Python version of data file -- Andreas Tille Wed, 17 Oct 2018 21:31:48 +0200 python-cobra (0.5.9-1) unstable; urgency=medium * New upstream release * Refresh patch -- Afif Elghraoui Wed, 25 Jan 2017 01:22:48 -0800 python-cobra (0.5.6-1) unstable; urgency=medium * Imported Upstream version 0.5.6 * Update packaging to accommodate change in test suite framework - include a workaround for #846045 (in pytest-benchmark) to be able to run tests without pytest-benchmark available. * d/tests/Makefile: update test script to accommodate return code change -- Afif Elghraoui Tue, 29 Nov 2016 03:12:24 -0800 python-cobra (0.5.4-1) unstable; urgency=medium * Imported Upstream version 0.5.4 * Update upstream contact -- Afif Elghraoui Mon, 07 Nov 2016 20:51:23 -0800 python-cobra (0.5.2-1) unstable; urgency=medium * Drop patch applied upstream * Imported Upstream version 0.5.2 * Update docs installation * Remove unused lintian overrides -- Afif Elghraoui Fri, 21 Oct 2016 22:57:41 -0700 python-cobra (0.4.2~b1-1) unstable; urgency=medium * Imported Upstream version 0.4.2~b1 * Refresh patches * Use Make to drive autopkgtests and document some rationale * Clean up d/control and d/rules * Include jsonschema and pandas to run additional CI tests -- Afif Elghraoui Sun, 17 Jul 2016 16:43:42 -0700 python-cobra (0.4.1-2) unstable; urgency=medium * Team upload. * Make build reproducible. - Ensure stable ordering for required dependencies. * Bump Standards-Version. -- Sascha Steinbiss Wed, 01 Jun 2016 14:47:03 +0000 python-cobra (0.4.1-1) unstable; urgency=medium * Imported Upstream version 0.4.1 * Refreshed patch -- Afif Elghraoui Thu, 24 Mar 2016 20:31:39 -0700 python-cobra (0.4.0+0-1) unstable; urgency=medium * Imported Upstream version 0.4.0 * Add uversionmangle to d/watch * Use encrypted protocols for VCS URLs -- Afif Elghraoui Tue, 08 Mar 2016 22:04:56 -0800 python-cobra (0.4.0b7-1) unstable; urgency=medium * Imported Upstream version 0.4.0b7 * Update standards version * Run additional tests at build-time * Clean up and fix autopkgtest -- Afif Elghraoui Sat, 20 Feb 2016 01:05:24 -0800 python-cobra (0.4.0b6-1) unstable; urgency=medium * Run autopkgtests from outside the source tree * Imported Upstream version 0.4.0b6 -- Afif Elghraoui Mon, 21 Dec 2015 21:29:51 -0800 python-cobra (0.4.0b4-1) unstable; urgency=medium * Imported Upstream version 0.4.0b4 -- Afif Elghraoui Sun, 13 Sep 2015 02:15:32 -0700 python-cobra (0.4.0b3-1) unstable; urgency=medium * Imported Upstream version 0.4.0b3 * Removed patch that was applied upstream * Adjusted autopkgtest commands * Refreshed quilt patch -- Afif Elghraoui Fri, 28 Aug 2015 22:27:50 -0700 python-cobra (0.4.0b2-1) unstable; urgency=medium * Adjust package relationships as requested by upstream * Imported Upstream version 0.4.0b2 (Closes: 794978) * Require matching version of the data package * Configured autopkgtests * Allowed tests to run without python-jsonschema * Added lintian overrides for python-cobra-data -- Afif Elghraoui Tue, 04 Aug 2015 18:52:51 -0700 python-cobra (0.4.0b1-2) unstable; urgency=medium * Add more recommended packages in d/control * Add suggestion of jython for python-cobra * Really remove jython files from python3-package. Thanks to Aaron Ucko for the bug report (Closes: 792058) -- Afif Elghraoui Fri, 10 Jul 2015 18:35:52 -0700 python-cobra (0.4.0b1-1) unstable; urgency=medium * Update watch file to pick up alpha and beta releases * Imported Upstream version 0.4.0b1 * Remove obsolete patches * Remove copyright statements for files removed upstream * Update d/copyright to reflect new upstream dual-licensing and correct gpl3 mistake * Refine dh_install overrides to exclude jython code from python3 package * Add build-dependencies on python(3)-six * Disable building of documentation until Sphinx 1.3 is available -- Afif Elghraoui Thu, 09 July 2015 18:12:36 -0700 python-cobra (0.3.2-1) unstable; urgency=medium * Initial release (Closes: #788224) * Add patches to improve Python3 compatibility * Specify copyright for the externally-contributed modules * Exclude cobra/test/data/update_pickles.py * Create package for data and documentation * Use packaged versions of javascript libraries where available -- Afif Elghraoui Tue, 09 Jun 2015 06:20:48 -0700