sambamba (0.8.0-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.1 (routine-update) -- Andreas Tille Fri, 04 Dec 2020 21:21:52 +0100 sambamba (0.7.1-5) unstable; urgency=medium * Team upload. [ Andreas Tille ] * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target (routine- update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit. * DEP3 * Lintian-override for static linking [ Étienne Mollier ] * Define zlib dependency in meson.build. (Closes: #966914) * Default to libcurl4-gnutls-dev as libcurl-dev dependency. (Fixes lintian virtual-package-depends-without-real-package-depends) -- Étienne Mollier Wed, 11 Nov 2020 09:27:56 +0100 sambamba (0.7.1-4) unstable; urgency=medium * d/control: - versioned dependency on htslib-dev to request non-stripped libhts.a - Standards-Version: 4.5.0 - debhelper-compat 13 - Rules-Requires-Root: no - Completed dependencies for cowbuilder * d/rules: better clean -- Steffen Moeller Sun, 05 Jul 2020 01:53:01 +0200 sambamba (0.7.1-3) unstable; urgency=medium * Fixed build failure (Closes: # 948919) with - dependency on newer htslib package that is not stripped - and exports the cram_to_bam function - avoided use of inline htslib function by sambamba Upstream informed on https://github.com/samtools/htslib/issues/1098 -- Steffen Moeller Sat, 04 Jul 2020 19:18:06 +0200 sambamba (0.7.1-2) UNRELEASED; urgency=medium * Use 2to3 to port from Python2 to Python3 Closes: #938431 * Set upstream metadata fields: Repository, Repository-Browse. -- Andreas Tille Tue, 17 Dec 2019 21:03:13 +0100 sambamba (0.7.1-1) unstable; urgency=medium [ Andreas Tille ] * New upstream release Closes: #907489 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Add build time test * Allow pre-releases in watch file * Versioned Build-Depends: libbiod (>= 0.2.1) [ Steffen Möller ] * Update metadata with ref to conda [ Matthias Klumpp ] * New upstream version: 0.7.1 * Run tests and build with strong optimizations * add-meson-build.patch: Update Meson build definition - Closes: #907489 - We link against BioD stantically now - Tests are integrated into Meson - Allow switching on stronger optimizations used by the upstream Makefile * Depend on latest libbiod (>= 0.2.3) * Don't depend on libundead * Bump dh compat level to 12 * Bump standards version (No changes needed) * Remove test artifacts in clean target -- Matthias Klumpp Sun, 15 Dec 2019 12:52:42 +0100 sambamba (0.6.7-2) unstable; urgency=medium * Team upload. * Disable assert on i386, this is a new assert, but the current package is already broken on i386. Upstream is working on a proper fix, in the meantime we can let the package migrate without removing i386 or making things worse for this architecture. Closes: #893664 See: https://github.com/biod/sambamba/issues/344 (and issue 300) [ Steffen Möller ] * Update upstream metadata file [ Matthias Klumpp ] * Fail on missing files * Do not force disable of neon on armhf in rules file, already handled by dh-dlang [ Andreas Tille ] * Fix typo in metadata file -- Gianfranco Costamagna Wed, 18 Apr 2018 12:10:12 +0200 sambamba (0.6.7-1) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: - yamllint cleanliness - added references to registries [ Andreas Tille ] * New upstream version * Use dh-dlang * Standards-Version: 4.1.3 * debhelper 11 * enable hardening options * move bash_completion scripts to new location -- Andreas Tille Tue, 20 Mar 2018 10:53:49 +0100 sambamba (0.6.6-1) unstable; urgency=medium * Initial release (Closes: #871497) -- Andreas Tille Tue, 08 Aug 2017 17:20:06 +0200