snakemake (5.24.1-2) unstable; urgency=medium
* Team upload.
* Skip tests accessing remote locations
Closes: #986768
-- Andreas Tille <tille@debian.org> Mon, 12 Apr 2021 17:17:32 +0200
snakemake (5.24.1-1) unstable; urgency=medium
* New upstream release. Refresh patches.
* Depend on python3-pulp << 2.0.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Sun, 13 Sep 2020 16:46:02 +0100
snakemake (5.23.0-1) unstable; urgency=medium
* New upstream release.
* Add new dependency python3-pulp.
* Remove unnecessary test skips, and document remaining ones.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Sat, 29 Aug 2020 11:46:20 +0100
snakemake (5.22.1-1) unstable; urgency=medium
* New upstream release. Refresh patches.
* Update Lintian overrides.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Sun, 16 Aug 2020 14:04:24 +0100
snakemake (5.20.1-1) unstable; urgency=medium
* New upstream release. Refresh patches.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Wed, 15 Jul 2020 08:32:43 +0100
snakemake (5.19.3-1) unstable; urgency=medium
* New upstream release.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Sun, 28 Jun 2020 22:38:45 +0100
snakemake (5.19.2-1) unstable; urgency=medium
* New upstream release.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Tue, 09 Jun 2020 18:32:35 +0100
snakemake (5.18.1-1) unstable; urgency=medium
* New upstream release. Refresh patches, update override path.
* Docs: work around Sphinx bug 7516.
* Skip more tests with not-in-Debian dependencies.
* Bump dephelper compat to 13, remove now-builtin rules.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Sun, 31 May 2020 10:54:51 +0100
snakemake (5.17.0-1) unstable; urgency=medium
* Team upload.
* New upstream version
* d/p/security.patch: adopted upstream - removed
-- Steffen Moeller <moeller@debian.org> Sat, 09 May 2020 17:26:55 +0200
snakemake (5.16.0-1) unstable; urgency=medium
* New upstream release. Drop / refresh patches.
* Stop using pytest-xdist: it sometimes starts tests from
a non-main thread, which breaks snakemake.
* Dockerfile: fix remote root-in-container security hole.
* Skip a new conda-using test.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Mon, 04 May 2020 12:16:03 +0100
snakemake (5.14.0-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* Remove trailing whitespace in debian/changelog (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
[ Rebecca N. Palmer ]
* Use Python 3 in subprocess calls.
* Fix buggy test (upstream 322).
* Disable tests needing conda or docker.
* Delete unused patches.
* Use boto3 (like upstream) not boto.
* Reproducibility: don't ship (timestamped) test logs.
* Add self to Uploaders.
* Update d/copyright, remove no longer needed Files-Excluded.
* Enable verbose test output.
* Update dependencies, add minimal-Depends test.
* Privacy: use local dagre-d3, add missing Javascript dependencies,
don't appear to show live status when we don't.
* Use https for links where available.
* Remove inconveniently licensed (CC-BY-SA) snippets.
* Install examples.
-- Rebecca N. Palmer <rebecca_palmer@zoho.com> Sat, 25 Apr 2020 19:10:20 +0100
snakemake (5.10.0-3) unstable; urgency=medium
[ Rebecca N. Palmer ]
* Exclude lazy_property to make Sphinx succeed.
Closes: #955056
-- Andreas Tille <tille@debian.org> Thu, 09 Apr 2020 11:09:24 +0200
snakemake (5.10.0-2) unstable; urgency=medium
* Team upload.
* Actually fix #943956, thanks to Chris Lamb for the quick hint
-- Alexandre Mestiashvili <mestia@debian.org> Tue, 11 Feb 2020 11:31:06 +0100
snakemake (5.10.0-1) unstable; urgency=medium
* Team upload.
* New upstream version 5.10.0
Closes: #943956
* Refresh python3 patch, drop 0012-reproducible-build.patch
* d/control: add python3-nbformat, python3-toposort to Build-Depends,
bump Policy to 4.5.0
-- Alexandre Mestiashvili <mestia@debian.org> Sun, 09 Feb 2020 11:57:42 +0100
snakemake (5.9.1-1) unstable; urgency=medium
* Team upload.
* New upstream release.
* Exclude new test 'test_env_modules' as it isn't for us.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 01 Jan 2020 16:06:43 +0100
snakemake (5.8.1-1) unstable; urgency=medium
* Team upload.
* Quilt isn't needed for the autopkgtests, so drop it
-- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 15 Nov 2019 15:55:01 +0100
snakemake (5.7.4-1) unstable; urgency=medium
* Team upload.
* New upstream release.
* Skip test_url_include in the autopkgtest
* debian/{control,copyight,watch}: upstream is now using GitHub
* Set upstream metadata fields: Repository.
* Adapt some of the new tests to use python3 instead of python.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 30 Oct 2019 17:22:29 +0100
snakemake (5.6.0-2) unstable; urgency=medium
* Team upload.
* debian/tests: Add missing dependency on python3-pandas; set $HOME
* Enable parallel testing everywhere
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 15 Sep 2019 13:33:57 +0200
snakemake (5.6.0-1) unstable; urgency=medium
* Team upload.
* New upstream version
* 0013-remove-duplicate-keyword-argument.patch removed, applied upstream
* Add AutoPkgTests
-- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 13 Sep 2019 16:15:23 +0200
snakemake (5.5.4-2) unstable; urgency=medium
* set $HOME to fix build on sbuild
-- Michael R. Crusoe <michael.crusoe@gmail.com> Fri, 06 Sep 2019 13:50:09 +0900
snakemake (5.5.4-1) unstable; urgency=medium
[ Dylan Aïssi ]
* Apply patch from Chris Lamb to make the build reproducible
(Closes: #932116).
[ Michael R. Crusoe ]
* New upstream release
* debian/control: Add missing build-deps (as shown in errors during the
documentation building)
* debian/README.source: Document missing (optional?) dependencies
* debian/rules: Fix test invocation, as almost all tests were missed;
Document what is known about the skipped tests
* Apply patch from upstream to fix duplicated argument (Closes: #933527)
[ Andreas Tille ]
* debhelper-compat 12
* Standards-Version: 4.4.0
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Remove obsolete fields Name, Contact from debian/upstream/metadata.
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 31 Jul 2019 11:24:24 +0200
snakemake (5.5.3-1) unstable; urgency=medium
* Team upload.
* New upstream version.
-- Dylan Aïssi <daissi@debian.org> Sat, 13 Jul 2019 17:39:18 +0200
snakemake (5.4.0-1) unstable; urgency=medium
* Team upload.
* New upstream version.
New Build-Dep: python3-git
* Standards-Version: 4.3.0
-- Dylan Aïssi <daissi@debian.org> Fri, 04 Jan 2019 10:47:45 +0100
snakemake (5.3.0-1) unstable; urgency=medium
* Team upload.
* New upstream version
New build-dep: python3-pandas and python3-jsonschema
* Standards-Version: 4.2.1
-- Dylan Aïssi <daissi@debian.org> Wed, 24 Oct 2018 07:59:34 +0200
snakemake (5.2.1-1) unstable; urgency=medium
* Team upload.
* New upstream version
- Fix compatibility with python 3.7 (Closes: #904350)
* Remove 0012-skip_test_needing_networ_connection.patch
upstream applied.
-- Dylan Aïssi <bob.dybian@gmail.com> Fri, 27 Jul 2018 19:30:16 +0200
snakemake (5.1.5-1) unstable; urgency=medium
* Team upload.
* New upstream version
Closes: #894213
* Standards-Version: 4.1.5
* debhelper 11
* d/rules: delete get-orig-source target
* Build-Depends: r-cran-rmarkdown and disable patch that skips test using
RMarkdown
* Recommends: r-cran-rmarkdown
* (Build-)Depends: python3-datrie, python3-networkx, python3-recommonmark,
python3-pygraphviz, python3-pytest
* Point Vcs-fields to Salsa
* Drop X-Python-Version
* Merge upstream commit to skip tests needing network access (upstream issue
#902)
* Lintian override for test data (false positive for source-is-missing)
* Remove ancient-python-version-field X-Python3-Version
-- Andreas Tille <tille@debian.org> Mon, 09 Jul 2018 14:18:13 +0200
snakemake (4.3.1-1) unstable; urgency=medium
* Team upload
[ Dylan Aïssi ]
* Add upstream/metadata
[ Andreas Tille ]
* Remove sphinxext which spoils doc generation
* Fix build with Python 3.6
Closes: #878498
[ Christian M. Amsüss ]
* New upstream version 4.3.1
- updated lintian overrides
* Add build dependency on python3-ratelimiter
* Patch out test cases with unsatisfied dependencies
* Bump standards version to 4.1.2
[ Andreas Tille ]
* Avoid privacy breach. The tradeoff is that the local static copy might
become but people interested in latest information will read online
anyway.
* Mention remaining potential privacy breach issues in debian/README.source
-- Christian M. Amsüss <chrysn@fsfe.org> Mon, 11 Dec 2017 20:51:06 +0100
snakemake (3.10.0-1) unstable; urgency=medium
* New upstream version 3.10.0
* Refresh patches
-- Kevin Murray <kdmfoss@gmail.com> Thu, 19 Jan 2017 11:41:55 +1100
snakemake (3.9.1-2) unstable; urgency=medium
* Future-proof patch to work-around missing snakemake binary when running
tests before installation
* Backport fix for crash with dynamic rules (from bitbucket PR #168).
* Update my email address
-- Kevin Murray <kdmfoss@gmail.com> Wed, 18 Jan 2017 00:20:04 +0000
snakemake (3.9.1-1) unstable; urgency=medium
* Team upload
* New upstream version
* New Build-Depends: python3-sphinx-rtd-theme
-- Andreas Tille <tille@debian.org> Fri, 13 Jan 2017 15:03:15 +0100
snakemake (3.9.0+dfsg-2) unstable; urgency=medium
* Team upload.
* Ignore failures of test that might happpen in pbuilder
Closes: #848820
-- Andreas Tille <tille@debian.org> Thu, 22 Dec 2016 09:55:33 +0100
snakemake (3.9.0+dfsg-1) unstable; urgency=medium
[ Kevin Murray ]
* New upstream version 3.9.0 (Closes: #845737)
[ Andreas Tille ]
* debhelper 10
* d/watch: version=4
* Ignore failures of test that might happpen in pbuilder
-- Kevin Murray <kdmfoss@gmail.com> Wed, 07 Dec 2016 09:02:12 +1100
snakemake (3.8.2+dfsg-1) unstable; urgency=medium
* Update d/watch with bitbucket's new tag page
* New upstream version 3.8.2
* Patch to avoid test failure
* Add new dependencies to d/control
-- Kevin Murray <kdmfoss@gmail.com> Fri, 02 Dec 2016 13:51:01 +1100
snakemake (3.7.1+dfsg-1) unstable; urgency=low
* Imported new upstream version 3.7.1
* Bump standards version to 3.9.8
-- Kevin Murray <kdmfoss@gmail.com> Tue, 28 Jun 2016 14:54:17 +1000
snakemake (3.6.1+dfsg-1) unstable; urgency=low
* Imported new upstream version 3.6.1
-- Kevin Murray <kdmfoss@gmail.com> Tue, 19 Apr 2016 12:15:15 +1000
snakemake (3.5.5+dfsg-1) unstable; urgency=low
* Imported new upstream version 3.5.5
* Use filenamemangle in d/watch
-- Kevin Murray <kdmfoss@gmail.com> Fri, 29 Jan 2016 17:18:28 +0200
snakemake (3.5.4+dfsg-1) unstable; urgency=medium
* Imported Upstream version 3.5.4+dfsg
-- Kevin Murray <kdmfoss@gmail.com> Thu, 17 Dec 2015 21:11:20 +1100
snakemake (3.4.2+dfsg-2) unstable; urgency=low
* Fix watch file and d/control with new upstream URL
-- Kevin Murray <kdmfoss@gmail.com> Thu, 19 Nov 2015 11:20:03 +1100
snakemake (3.4.2+dfsg-1) unstable; urgency=low
* Initial release (Closes: #798824)
-- Kevin Murray <kdmfoss@gmail.com> Sun, 13 Sep 2015 22:58:41 +1000