subread (2.0.1+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Archive. (routine-update)
* Rely on pre-initialized dpkg-architecture variables. (routine-update)
* d/rules: extended clean to allow consecutive builds
* d/copyright: excluded changing test/*gz files from source tree
-- Steffen Moeller <moeller@debian.org> Fri, 22 May 2020 19:31:20 +0200
subread (2.0.0+dfsg-2) unstable; urgency=medium
* Add patch to build with gcc-10
Closes: #957846
-- Nilesh Patra <npatra974@gmail.com> Sat, 18 Apr 2020 21:55:06 +0530
subread (2.0.0+dfsg-1) unstable; urgency=medium
* New upstream version
* Use 2to3 to port to Python3
Closes: #938576
-- Andreas Tille <tille@debian.org> Thu, 05 Sep 2019 09:30:37 +0200
subread (1.6.5+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.4.0
-- Steffen Moeller <moeller@debian.org> Fri, 09 Aug 2019 16:21:31 +0200
subread (1.6.4+dfsg-1) unstable; urgency=medium
* Update d/watch, add uversionmangle to remove -source suffix
* New upstream version 1.6.4+dfsg
* Refresh patches, update typo.patch
* Switch to debhelper-compat, drop d/compat
* Install genRandomReads binary and generate man page
-- Alexandre Mestiashvili <mestia@debian.org> Tue, 30 Apr 2019 10:58:08 +0200
subread (1.6.3+dfsg-1) unstable; urgency=medium
[ Alexandre Mestiashvili ]
* New upstream version 1.6.3+dfsg
* DH_VERBOSE=1, check for nocheck in DEB_BUILD_OPTIONS
* Bump Policy to 4.3.0
* Refresh patches
* Don't install buggy detectionCall binary
* Update d/README.Debian
[ Andreas Tille ]
* debhelper 12
-- Alexandre Mestiashvili <mestia@debian.org> Wed, 30 Jan 2019 20:19:47 +0100
subread (1.6.2+dfsg-1) unstable; urgency=medium
* New upstream version 1.6.2+dfsg
* d/control:
- bump Policy to 4.1.4
- update uploader's email in d/{control,copyright}
- bump compat to 11
* Remove --parallel from dh invocation in d/rules
* Generate man page for flattenGTF with help2man
* Install new binary flattenGTF
* Refresh and update patches
-- Alexandre Mestiashvili <mestia@debian.org> Fri, 18 May 2018 19:07:58 +0200
subread (1.6.1+dfsg-1) unstable; urgency=medium
[ Steffen Möller ]
* Added new d/u/metadata file
[ Alexandre Mestiashvili ]
* New upstream version 1.6.1+dfsg
* Update d/control, bump Policy to 4.1.3, fix Vcs-* fields to point to salsa
* Refresh patches
* Update copyright years
-- Alexandre Mestiashvili <mestia@debian.org> Wed, 04 Apr 2018 17:04:57 +0000
subread (1.6.0+dfsg-1) unstable; urgency=medium
* Update d/watch to version 4
* New upstream version 1.6.0+dfsg
* Update d/subread.install, add sublong and txUnique binaries
* d/rules:
- add man page generation for sublong binary
- use conditional variable assignment operator for DEB_HOST_ARCH
* d/control:
- bump Standards-Version to 4.1.1
- drop autopkgtest testsuite from d/control as we have d/tests/control
* Update arch_specific_flags patch, fix Makefile for sublong
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 17 Nov 2017 16:43:55 +0100
subread (1.5.3+dfsg-1) unstable; urgency=medium
* Bump Standards-Version to 4.0.0
* New upstream version 1.5.3+dfsg
* Refresh and update paches
* Update man pages
* Remove trailing whitespaces from changelog
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 28 Jul 2017 16:09:49 +0200
subread (1.5.2+dfsg-1) unstable; urgency=medium
* New upstream version 1.5.2+dfsg
* Refresh and update patches
* Add d/patches/typo.patch fixing a typo in featureCounts
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 21 Mar 2017 16:18:52 +0100
subread (1.5.1+dfsg-4) unstable; urgency=medium
* Fix watch file
* debhelper 10
* remove outdated information from README.source
-- Andreas Tille <tille@debian.org> Fri, 02 Dec 2016 08:22:05 +0100
subread (1.5.1+dfsg-3) unstable; urgency=medium
* Pass triplet-prefixed CC to make
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Mon, 05 Sep 2016 14:59:37 +0200
subread (1.5.1+dfsg-2) unstable; urgency=medium
* Team upload.
* Make build reproducible.
- Add compiler flags to ensure use of -fdebug-prefix-map.
-- Sascha Steinbiss <satta@debian.org> Sun, 04 Sep 2016 15:16:33 +0000
subread (1.5.1+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.5.1+dfsg
* Fix copyright Format: s/http/https/
* Refresh and remove applied patches
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Sun, 28 Aug 2016 08:43:33 +0200
subread (1.5.0-p3+dfsg-3) unstable; urgency=medium
* Team upload.
* Further address reproducibility by forcing mode on tarball contents.
-- Sascha Steinbiss <satta@debian.org> Thu, 21 Jul 2016 13:23:14 +0000
subread (1.5.0-p3+dfsg-2) unstable; urgency=medium
* Team upload.
* Make build reproducible by ensuring umask and mtime of
archive contents are deterministic.
-- Sascha Steinbiss <satta@debian.org> Mon, 18 Jul 2016 07:46:12 +0000
subread (1.5.0-p3+dfsg-1) unstable; urgency=medium
* Drop get-orig-source target, update d/watch to repack and use compression xz
* Imported Upstream version 1.5.0-p3+dfsg
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Sat, 04 Jun 2016 09:16:27 +0200
subread (1.5.0-p2+dfsg-3) unstable; urgency=medium
* Fix build on armel, armhf, arm64 and ppc64el
It appears that -fsigned-char option must be defined before other CFLAGS or
some binaries fail to work on architectures defined above
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 26 Apr 2016 22:44:51 +0200
subread (1.5.0-p2+dfsg-2) unstable; urgency=medium
* Cleanup d/rules
* Add patch fixing ftbfs on kfreebsd
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Sat, 23 Apr 2016 22:19:34 +0200
subread (1.5.0-p2+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.5.0-p2+dfsg
* Refresh patches
* Add --parallel to dh $@
* Update arch_specific_flags.patch: append CFLAGS and LDFLAGS
instead of hardcoding them in the Makefile
* Cme fix dpkg, update VCS fields, bump Standards-Version
* Add python and bc to Build-Depends, needed for tests
* Run all tests
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 22 Apr 2016 18:09:24 +0200
subread (1.5.0-p1+dfsg-2) unstable; urgency=medium
* d/control: remove hurd-i386 and mipsel due to failing tests
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Mon, 18 Jan 2016 12:03:41 +0100
subread (1.5.0-p1+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.5.0-p1+dfsg
* d/patches: refresh and remove applied patches
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 05 Jan 2016 15:58:47 +0100
subread (1.5.0+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.5.0+dfsg
* no PDF documentation in this release
* removed globalReassembly and subtools binaries, added "repair" tool
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 06 Nov 2015 15:05:00 +0100
subread (1.4.6-p5+dfsg-1) unstable; urgency=medium
* Imported Upstream version 1.4.6-p5+dfsg
* Build and install SubreadUsersGuide.pdf
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Sat, 05 Sep 2015 12:35:30 +0200
subread (1.4.6-p4+dfsg-1) unstable; urgency=medium
* d/patches/arch_specific_flags.patch: set the optimization level
to -03 because -O levels higher than 3 have no effect.
* Imported Upstream version 1.4.6-p4+dfsg
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Mon, 06 Jul 2015 15:51:55 +0200
subread (1.4.6-p3+dfsg-2) unstable; urgency=medium
* d/changelog: upload to unstable, forgot to include the amd64 architecture
in d/contorl
* d/control: added amd64 to Architecture
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 21 May 2015 20:56:14 +0200
subread (1.4.6-p3+dfsg-1) unstable; urgency=medium
* d/changelog: upload to unstable
* d/rules: enable -fsigned-char for all architectures
* d/patches/arch_specific_flags.patch: use -O2 instead of -O9
* d/control: not building for powerpc, mips, s390x, see d/README.source
* d/README.source: merge with d/README.Debian-source describe the reason
for not building on some architectures
* Imported Upstream version 1.4.6-p3+dfsg
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 19 May 2015 13:51:49 +0200
subread (1.4.6-p2+dfsg-4) experimental; urgency=medium
* d/rules: add -msse3 and -mtune=generic for i386/amd64
* d/patches: merge hardening and gcc_flags_cleanup patches
* d/patches: updated and renamed getopt4exactSNP.patch to getopt.patch
fixed 2 more issues with wrong assignment for the getopt_long function
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Mon, 18 May 2015 17:46:15 +0200
subread (1.4.6-p2+dfsg-3) experimental; urgency=medium
* d/patches/getopt4exactSNP.patch: attempt to fix #784929
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Wed, 13 May 2015 22:22:24 +0200
subread (1.4.6-p2+dfsg-2) unstable; urgency=medium
* d/patches/gcc_flags_cleanup.patch: remove -mtune=core2 and mmmx,msse* flags
Closes: #784780
* d/rules: use override_dh_installexamples-indep, Closes: #784782
* d/README.Debian-source: mention doc/SubreadUserGuide.pdf removal
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Sun, 10 May 2015 10:43:19 +0200
subread (1.4.6-p2+dfsg-1) unstable; urgency=medium
* Actual first upload after fixing ftpmaster issues
Closes: #779014
* d/copyright: exclude pdf without source files
* d/patches: add Descriptions
* d/watch: use repacksuffix to add +dfsg suffix
* Imported Upstream version 1.4.6-p2+dfsg
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 07 May 2015 21:13:48 +0200
subread (1.4.6-p2-1) UNRELEASED; urgency=medium
* Imported Upstream version 1.4.6-p2
* fixed regexps for man pages cleanup
* d/README.Debian: add note about subread user guide url
* d/doc-base: remove, as no documentation supplied with the package
* d/subread.docs: remove SubreadUserGuide.pdf
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 23 Apr 2015 10:22:03 +0200
subread (1.4.6-p1-1) unstable; urgency=low
* Initial release. Closes: #779014
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 20 Feb 2015 10:48:06 +0100