tm-align (20190822+dfsg-3) unstable; urgency=medium * Remove Tim Booth since address is bouncing (Thank you for your work on this package, Tim) * Standards-Version: 4.7.0 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * Secure URI in watch file -- Andreas Tille Mon, 16 Sep 2024 13:01:07 +0200 tm-align (20190822+dfsg-2) unstable; urgency=medium [ Chris Lamb ] * make the build reproducible Closes: #943954 [ Andreas Tille ] * Rename autopkgtest script to run-unit-test as in other Debian Med packages * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g -- Andreas Tille Tue, 24 Dec 2019 08:07:50 +0100 tm-align (20190822+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.4.1 * Use secure URI in Homepage field. * Remove obsolete fields Contact, Name from debian/upstream/metadata. -- Steffen Moeller Tue, 17 Dec 2019 17:23:09 +0100 tm-align (20190708+dfsg-1) unstable; urgency=medium * New upstream version * Packaged with routine-update script * debhelper-compat 12 * Standards-Version: 4.4.0 -- Steffen Moeller Mon, 29 Jul 2019 23:00:47 +0200 tm-align (20170708+dfsg-2) unstable; urgency=medium * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright -- Andreas Tille Tue, 30 Oct 2018 11:56:31 +0100 tm-align (20170708+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.1.3 * debhelper 11 * d/watch: version=4 (despite upstream page supports https, watch file fails if using https there) -- Andreas Tille Sun, 18 Feb 2018 17:32:48 +0100 tm-align (20160521+dfsg-2) unstable; urgency=medium * Team upload. * fix typo in package's description in d/control * add example gzipped protein structures+mention them in d/source/binaries * add testsuite * add README.test for testsuite * add example files to d/copyright, add tm-align.examples file -- Tatiana Malygina Fri, 10 Jun 2016 22:12:31 +0000 tm-align (20160521+dfsg-1) unstable; urgency=medium * New upstream version * Moved packaging from SVN to Git * Use xz compression in watch file * cme fix dpkg-control * Better hardening -- Andreas Tille Mon, 30 May 2016 09:35:45 +0200 tm-align (20150914+dfsg-1) unstable; urgency=medium * New homepage * New upstream version * cme fix dpkg-control * dversionmangle in d/watch -- Andreas Tille Wed, 23 Sep 2015 10:01:59 +0200 tm-align (20140601+dfsg-1) unstable; urgency=medium * New upstream version * Use Files-Excluded consequently (in rules:get-orig-source, drop d/get-orig-source, adapt d/watch from dversionmangle to uversionmangle) -- Andreas Tille Thu, 07 Aug 2014 16:21:35 +0200 tm-align (20130511+dfsg-2) unstable; urgency=medium * Fix Vcs location * move debian/upstream to debian/upstream/metadata * cme fix dpkg-control -- Andreas Tille Thu, 13 Feb 2014 17:03:43 +0100 tm-align (20130511+dfsg-1) unstable; urgency=low * New upstream version * debian/copyright: - Add Files-Excluded to document what was removed from original source * debian/watch: enable handling of +dfsg suffix * debian/get-orig-source: use new uscan of available * debian/upstream: more detailed information * debian/control: - cme fix dpkg-control - use anonscm in Vcs fields -- Andreas Tille Fri, 02 Aug 2013 14:55:58 +0200 tm-align (20120507-1) unstable; urgency=low * New upstream version * debian/rules: Add hardening options -- Andreas Tille Fri, 29 Jun 2012 18:30:36 +0200 tm-align (20120124-1) unstable; urgency=low [ Charles Plessy ] * debian/upstream: renamed from upstream-metadata.yaml [ Andreas Tille ] * New upstream version * debian/upstream: - Fixed typo (s/TITILE/TITLE/) - Moved DOI+PMID to references * debian/control: Standards-Version: 3.9.3 (no changes needed) * debhelper 9 (control+compat) * debian/changelog: DEP5 verified using cme fix dpkg-copyright -- Andreas Tille Thu, 08 Mar 2012 15:35:07 +0100 tm-align (20111012-1) unstable; urgency=low * New upstream release * Enhances t-coffee * Standards-Version: 3.9.2 (no changes needed) * Debhelper 8 (control + compat) * Fixed Vcs fields -- Andreas Tille Fri, 21 Oct 2011 10:00:04 +0200 tm-align (20110130-2) unstable; urgency=low * New upstream version (Closes: #447505) - 2011/01/30: An open source license is attached to the program * Reverting changelog to keep the history. -- Steffen Moeller Sat, 05 Feb 2011 12:43:32 +0100 tm-align (20110130-1) UNRELEASED; urgency=low * Initial release. -- Andreas Tille Sun, 30 Jan 2011 22:49:21 +0100 tm-align (20110124-1) UNRELEASED; urgency=low * New upstream version - 2005/06/01: A small bug of two-point superposition was fixed. - 2005/10/19: the program was reformed so that the alignment results are not dependent on the specific compilers. - 2006/06/20: select 'A' if there is altLoc when reading PDB file. - 2007/02/27: rotation matrix from Chain-1 to Chain-2 was added. - 2007/04/18: added options with TM-score normalized by average length, shorter length, or longer length of two structures. - 2007/05/23: added additional output file 'TM.sup_all' for showing all atoms while 'TM.sup' is only for aligned atoms - 2007/09/19: added a new feature alignment to deal with the problem of aligning fractional structures (e.g. protein interfaces). - 2007/10/16: A bug for irregular bond-length models was fixed. - 2009/03/14: A new initial alignment was added and previous initial alignments are further enhanced. This change increased accuracy by 4% but increases CPU cost by 40%. - 2009/08/20: A bug for asymmetry alignment result was fixed. - 2010/08/02: A new RMSD matrix was used to remove obsolete statements. Staled subroutines were deleted. - 2011/01/03: The length of pdb file names were extended to 500 - 2011/01/24: Fixed a bug on output file name created on 2011/01/03 * Tweaked get-orig-source in rules to spot version in upstream file * New standards version 3.9.4 -- Tim Booth Sun, 30 Jan 2011 13:34:53 +0000 tm-align (20050601-2) UNRELEASED; urgency=low * Updated to Standards-Version 3.7.3 (no changes needed) -- David Paleino Wed, 06 Feb 2008 13:11:58 +0100 tm-align (20050601-1) UNRELEASED; urgency=low * Initial packaging. -- Steffen Moeller Sun, 21 Oct 2007 17:11:53 +0200