Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: TopHat
Upstream-Contact: Daehwan Kim <infphilo@gmail.com>
Source: http://ccb.jhu.edu/software/tophat/index.shtml
Comment:
 Cole Trapnell wrote TopHat. TopHat is built on Bowtie, which was written by
 Ben Langmead and Cole Trapnell.  Daehwan Kim and Geo Pertea added support
 for SOLiD reads.
Files-Excluded:
    */src/SeqAn*
    */src/intervaltree*
    */src/sortedcontainers*
    */src/samtools-0.1.18*

Files: *
Copyright: © 2003-2010 Cole Trapnell et al
License: Artistic

Files: ax_boost_thread.m4
Copyright: © 2009 Thomas Porschberg <thomas@randspringer.de>
           © 2009 Michael Tindal
License: GAP

Files: ax_boost_base.m4
Copyright: © 2009 Thomas Porschberg <thomas@randspringer.de>
License: GAP

Files: aclocal.m4
Copyright: © 1996-2005 Free Software Foundation, Inc.
License: M4-free
 This file is free software; the Free Software Foundation
 gives unlimited permission to copy and/or distribute it,
 with or without modifications, as long as this notice is preserved.

Files: INSTALL configure
Copyright: © 1992-2010 Free Software Foundation, Inc.
License: autobuild-free
 This configure script is free software; the Free Software Foundation
 gives unlimited permission to copy, distribute and modify it.

Files: debian/*
Copyright: © 2011 Carlos Borroto <carlos.borroto@gmail.com>
           © 2016 Alex Mestiashvili <alex@biotec.tu-dresden.de>
License: GPL-2+

License: Artistic
 This program is free software; you can redistribute it and/or modify
 it under the terms of the Artistic License, which comes with Perl.
 .
 On Debian systems, the complete text of the Artistic License can be
 found in `/usr/share/common-licenses/Artistic'.

License: GAP
 Copying and distribution of this file, with or without modification, are
 permitted in any medium without royalty provided the copyright notice
 and this notice are preserved.

License: GPL-2+
 This package is free software; you can redistribute it and/or modify
 it under the terms of the GNU General Public License as published by
 the Free Software Foundation; either version 2 of the License, or
 (at your option) any later version.
 .
 This package is distributed in the hope that it will be useful,
 but WITHOUT ANY WARRANTY; without even the implied warranty of
 MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 GNU General Public License for more details.
 .
 You should have received a copy of the GNU General Public License
 along with this program. If not, see <http://www.gnu.org/licenses/>
 .
 On Debian systems, the complete text of the GNU General
 Public License version 2 can be found in "/usr/share/common-licenses/GPL-2".