trinityrnaseq (2.6.6+dfsg-6) unstable; urgency=medium * -examples: Don't hardcode number of --CPU (especially above 2). Fixes the autopkgtests when the number of CPUs/cores is less than 4 and blastn's intransigency to accept a larger value to -num_threads. -- Michael R. Crusoe Fri, 04 Jan 2019 03:38:40 -0800 trinityrnaseq (2.6.6+dfsg-5) unstable; urgency=medium * Added missing dependency on ncbi-blast+ to the binary package. -- Michael R. Crusoe Thu, 03 Jan 2019 01:15:29 -0800 trinityrnaseq (2.6.6+dfsg-4) unstable; urgency=medium * Default to Python 3, as needed. * Use better Java version check from upstream -- Michael R. Crusoe Wed, 02 Jan 2019 00:48:52 -0800 trinityrnaseq (2.6.6+dfsg-3) unstable; urgency=medium * debian/control: add numpy dependency, required for Analysis/SuperTranscripts/Trinity_gene_splice_modeler.py -- Michael R. Crusoe Tue, 01 Jan 2019 08:34:35 -0800 trinityrnaseq (2.6.6+dfsg-2) unstable; urgency=medium * debian/trinityrnaseq.install: Add BubbleUpClustering binary -- Michael R. Crusoe Mon, 31 Dec 2018 15:30:16 -0800 trinityrnaseq (2.6.6+dfsg-1) unstable; urgency=medium * Team upload. [ Michael R. Crusoe ] * New upstream release, now with the sample data returned Closes: #897877 * Build and ship seqtk-trinity [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright * Fix permissions and Perl interpreter path -- Andreas Tille Fri, 14 Dec 2018 08:58:49 +0100 trinityrnaseq (2.5.1+dfsg-2) unstable; urgency=medium * Team upload. [ Aurelien Jarno ] * Build with glibc 2.27 (fix for cannot find -lieee) -- Andreas Tille Sat, 17 Feb 2018 09:04:18 +0100 trinityrnaseq (2.5.1+dfsg-1) unstable; urgency=medium * New upstream release. Updated watch file. * NeedlemanWunschGotohBanded.java moved into trinityrnasq_jaligner package * Much of the sample data is missing from upstream's tarball, so some tests have been turned off -- Michael R. Crusoe Sun, 11 Feb 2018 09:13:04 -0800 trinityrnaseq (2.2.0+dfsg-4) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata - Completed references to registries - yamllint clean * debian/copyright - Corrected upstream-name to 'Trinity' [ Michael R. Crusoe ] * Removed unneeded dependency on r-bioc-edger -- Michael R. Crusoe Sat, 18 Nov 2017 05:00:08 -0800 trinityrnaseq (2.2.0+dfsg-3) unstable; urgency=medium * Team upload [ Gert Wollny ] * Fix build gcc 7 Closes: #853687 [ Andreas Tille ] * debhelper 10 Closes: #865262 * Standards-Version: 4.1.0 (no changes needed) * hardening=+all * remove unused lintian override * Build-Depends: bowtie2, yellyfish Closes: #860645 -- Andreas Tille Fri, 01 Sep 2017 21:57:01 +0200 trinityrnaseq (2.2.0+dfsg-2) unstable; urgency=medium * Team upload. * Fix build on GCC 6 (Closes: #831110) -- Sascha Steinbiss Fri, 05 Aug 2016 19:21:49 +0000 trinityrnaseq (2.2.0+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Team upload * d/watch: Use xz compression for upstream source [ Michael R. Crusoe ] * new upstream version * prune d/copyright excludes * refresh patches, drop a few included upstream * Standards-Version: '3.9.7' -> '3.9.8' -- Michael R. Crusoe Mon, 23 May 2016 11:46:45 -0700 trinityrnaseq (2.1.1+dfsg2-1) unstable; urgency=low * Properly harden Chrysalis binaries * Drop Galaxy plugin * Increment dfsg version for the above -- Michael R. Crusoe Thu, 25 Feb 2016 00:03:48 -0800 trinityrnaseq (2.1.1+dfsg-2) unstable; urgency=medium * Split install of arch-dependent & arch-independent files, fixes FTBFS (Closes: #813958) -- Michael R. Crusoe Sun, 07 Feb 2016 01:21:41 -0800 trinityrnaseq (2.1.1+dfsg-1) unstable; urgency=low * Initial release (Closes: #777697) -- Michael R. Crusoe Thu, 22 Oct 2015 08:31:56 -0700