xmds2 (3.1.0+dfsg2-10) unstable; urgency=medium * Team upload. * debian/tests/run-tests: Allow oversubscription and set the SSH agent using the new environment variables for OpenMPI 5. -- Santiago Vila Mon, 04 Nov 2024 20:10:00 +0100 xmds2 (3.1.0+dfsg2-9) unstable; urgency=medium * d/control: Bump Standards-Version to 4.7.0 (no changes needed) * Use importlib.resources instead of pkg_resources (closes: #1083992) + d/control: Drop dependency on python3-pkg-resources + d/p/use-importlib-resources-module.patch: New patch * Add Applied-Upstream fields to the following patches: + d/p/do-not-use-imp-module.patch + d/p/extra-alignment-tab.patch + d/p/numpy-asscalar.patch + d/p/pygments-style-lexer.patch * d/p/drop-useless-imports.patch: New patch. This avoids the import of the deprecated module pipes. (Closes: #1084592) * d/p/invalid-escape-sequences.patch: New patch * d/rules: Improve message for chmod wscript -- Rafael Laboissière Sat, 12 Oct 2024 10:23:40 -0300 xmds2 (3.1.0+dfsg2-8) unstable; urgency=medium * d/s/options: Do not exclude files under xpdeint/waf/ * d/p/do-not-use-imp-module.patch: New patch (Closes: #1061766) * d/control: Drop unnecessary build-dependencies on libjs-{jquery,sphinxdoc,jquery} * Use dh_sphinxdoc instead of manually creating symlinks for *.js files -- Rafael Laboissière Tue, 30 Jan 2024 11:29:12 -0300 xmds2 (3.1.0+dfsg2-7) unstable; urgency=medium * Simplify dependencies on hdf5 and h5py, related to MPI + d/p/h5py-always-use-mpi.patch: Drop patch + d/control: - Drop (build-)dependencies on both libhdf5-mpi-dev and python3-h5py-mpi. - Add versioned (build-)dependency (>= 3.9.0-4) on python3-h5py. This version of h5py contains a fallback mechanisms in both cases, when either python3-h5py-serial or python3-h5py-mpi are absent from the system. - Suggests libhdf5-mpi-dev and python3-h5py-mpi -- Rafael Laboissière Fri, 13 Oct 2023 12:56:19 -0300 xmds2 (3.1.0+dfsg2-6) unstable; urgency=medium * d/control: Depend and Build-Depend on both libhdf5-dev and libhdf5-mpi-dev -- Rafael Laboissière Tue, 10 Oct 2023 07:40:04 -0300 xmds2 (3.1.0+dfsg2-5) unstable; urgency=medium * Fix dependencies on h5py + d/control: - Build-depend on python3-h5py - Depend on libhdf5-mpi-dev + d/p/h5py-always-use-mpi.patch: New patch Thanks to Drew Parsons for the suggestions and Nilesh Patra for the discussion. (Closes: #1053314) -- Rafael Laboissière Sun, 08 Oct 2023 14:24:24 -0300 xmds2 (3.1.0+dfsg2-4) unstable; urgency=medium * d/p/deterministic-id.patch: Fix typo in Forwarded field * Use OpenBLAS or BLIS instead of ATLAS + d/control: Depend and build-depend on libopenblas-dev | libblis-dev instead of libatlas-base-dev + d/p/vanilla-cblas.patch: New patch * d/control: Bump Standards-Version to 4.6.2 (no changes needed) * d/fix-cheetah-build-str.py: + Apply standard code conventions + Use `with` for resource-allocating operation + Specify UTF-8 encoding when opening files + Use f-strings instead of % operator * d/copyright: Update copyright year of debian/* files -- Rafael Laboissière Mon, 17 Jul 2023 19:11:41 -0300 xmds2 (3.1.0+dfsg2-3) unstable; urgency=medium * d/p/numpy-asscalar.patch: New patch (Closes: #1026350) * d/clean: Remove _pygments/__pycache__ directory -- Rafael Laboissière Tue, 20 Dec 2022 14:19:54 -0300 xmds2 (3.1.0+dfsg2-2) unstable; urgency=medium * Automate the generation of the orig-userdoc upstream tarball -- Rafael Laboissière Mon, 05 Dec 2022 13:03:46 -0300 xmds2 (3.1.0+dfsg2-1) unstable; urgency=medium * New repackaged upstream version 3.1.0+dfsg2 * d/control: + Update X-Python3-Version field + Bump Standards-Version to 4.6.1 (no changes needed) + Make package xmds2-doc Multi-Arch: foreign * d/s/lintian-overrides: Update overrides for new version of Lintian * d/copyright: + Exclude documentation directory from tarball and update Copyright notices for userdoc directory + Update Copyright years for debian/* files + Drop unused entries for JavaScript libraries * d/p/pygments-style-lexer.patch: New patch * d/p/extra-alignment-tab.patch: New patch * d/rules: + Build user documentation from source + Create symlink for file language_data.js + Do not compress file xmds_favicon.ico * d/control: Build-depend on packages needed for building the documentation * d/README.source: New scheme for building the documentation * d/s/lintian-overrides: Drop unused override for prebuiltsphinx doc * d/xmds2-doc.docs: Install *.js files in xmds2-doc package -- Rafael Laboissière Fri, 04 Nov 2022 13:00:49 -0300 xmds2 (3.1.0+dfsg-3) unstable; urgency=medium * Reintroduce unit test involving Octave * d/s/lintian-overrides: Add override for very-long-line-length-in-source-file warnings -- Rafael Laboissière Tue, 02 Nov 2021 03:47:20 -0300 xmds2 (3.1.0+dfsg-2) unstable; urgency=medium * d/copyright: Update Copyright years * d/s/lintian-overrides: Add override for license-problem-gfdl-invariants false positive -- Rafael Laboissière Mon, 25 Oct 2021 02:03:41 -0300 xmds2 (3.1.0+dfsg-1) unstable; urgency=medium * New upstream version 3.1.0+dfsg * d/watch: Add repacksuffix option * d/copyright: Drop files removed from new upstream tarball * Drop patch (applied upstream) + d/p/compile-with-python3.patch + d/p/is-operator-syntax-warning.patch + d/p/h5py-value-deprecation.patch + d/p/non-ambiguous-global-variables.patch * d/rules: Drop code for removing __pycache__ directories before dh_installdeb -- Rafael Laboissière Sun, 24 Oct 2021 12:10:24 -0300 xmds2 (3.0.0+dfsg-6) unstable; urgency=medium * d/control: + Build-depend on python3:any + Bump Standards-Version to 4.6.0 (no changes needed) * d/copyright: Update copyright year for debian/* files * d/p/non-ambiguous-global-variables.patch: New patch (Closes: #996279) * Temporarily disable the unit test involving Octave. The octave package is not installable in unstable right now, due to problems in current library transitions. The unit test in d/t/run-tests is commented out and the dependencies on octave are dropped. -- Rafael Laboissière Sat, 23 Oct 2021 14:38:24 -0300 xmds2 (3.0.0+dfsg-5) unstable; urgency=medium * d/control: Bump Standards-Version to 4.5.1 (no changes needed) * d/rules: + Do not run unit tests on ppc64el (Closes: #976950) + Use execute_(before|after)_dh_* targets instead of override_dh_* -- Rafael Laboissière Sat, 02 Jan 2021 07:30:56 -0300 xmds2 (3.0.0+dfsg-4) unstable; urgency=medium * d/control: + Bump debhelper compatibitlity level to 13 + Depends on libjs-sphinxdoc * d/u/metadata: Drop Name and Contact fields * Set Forwarded field to not-needed: + d/p/decrease-mpirun-slots.patch + d/p/deterministic-id.patch + d/p/no-generation-timestamps.patch * Use the system-installed JavaScript libraries + d/control: Build-depends on libjs-{jquery,underscore,sphinxdoc} + d/rules: Symlink to the appropriate *.js files -- Rafael Laboissière Fri, 31 Jul 2020 12:01:01 -0300 xmds2 (3.0.0+dfsg-3) unstable; urgency=medium * d/control: + Build-depend and depend on python3-h5py-mpi (Closes: #938925) + Bump Standards-Version to 4.5.0 (no changes needed) * d/u/metadata: Add fields Bug-Submit, Repository, and Repository-Browse * d/p/is-operator-syntax-warning.patch: New patch * d/rules: Unset execute permission of wscript file. This complies with FHS 3.0, which specifies that files in /usr/lib should not be executable. * d/p/wscritp-no-shebang-line.patch: New patch * d/p/h5py-value-deprecation.patch: New patch -- Rafael Laboissière Mon, 30 Mar 2020 05:01:43 -0300 xmds2 (3.0.0+dfsg-2) unstable; urgency=medium * Upload to unstable -- Rafael Laboissiere Sun, 07 Jul 2019 19:19:03 -0300 xmds2 (3.0.0+dfsg-1) experimental; urgency=medium * New upstream version 3.0.0+dfsg -- Rafael Laboissiere Tue, 21 May 2019 11:37:25 -0300 xmds2 (2.3.0~rc1+dfsg-2) experimental; urgency=medium * d/p/compile-with-python3.patch: New patch (Closes: #929148) -- Rafael Laboissiere Sun, 19 May 2019 08:11:13 -0300 xmds2 (2.3.0~rc1+dfsg-1) experimental; urgency=medium * New upstream version 2.3.0~rc1+dfsg * d/copyright: Adjust list of files excluded from DFSG tarball * Refresh patches for new upstream version: + d/p/decrease-mpirun-slots.patch + d/p/no-parallel-waf-build.patch + d/p/revision-number-as-deb-pkg.patch * d/control: Adjust dependencies for Python 3 * d/rules: + Use Python 3 + Remove __pycache__ directories from binary package * d/clean: Remove Waf generated files -- Rafael Laboissiere Sat, 11 May 2019 06:37:30 -0300 xmds2 (2.2.3+dfsg-15) unstable; urgency=medium * d/p/no-parallel-waf-build.patch: New patch -- Rafael Laboissiere Sat, 19 Jan 2019 18:13:40 -0200 xmds2 (2.2.3+dfsg-14) unstable; urgency=medium * d/p/deterministic-id.patch: New patch -- Rafael Laboissiere Fri, 18 Jan 2019 11:10:50 -0200 xmds2 (2.2.3+dfsg-13) unstable; urgency=medium * Avoid unreproducible strings in Cheetah generated files + d/fix-cheetah-build-str.py: Set the srcLastModified string to the date in d/changelog. Also, remove the obsolete setting of the genTime* variables. + d/p/no-generation-timestamps.patch: New patch for adding the addTimestampsToCompilerOutput compiler option. -- Rafael Laboissiere Wed, 16 Jan 2019 15:47:06 -0200 xmds2 (2.2.3+dfsg-12) unstable; urgency=medium * d/control: Bump debhelper compat level to 12 * d/control: Bump Standards-Version to 4.3.0 (no changes needed) * d/p/decrease-mpirun-slots.patch: Extend the reduction of number of mpirun slots to a large numvber of unit tests. -- Rafael Laboissiere Thu, 10 Jan 2019 12:59:25 -0200 xmds2 (2.2.3+dfsg-11) unstable; urgency=medium * d/control: + Build-depend on python-scipy + Add Rules-Requires-Root: no + Bump Standards-Version to 4.2.1 (no changes needed) * d/p/decrease-mpirun-slots.patch: New patch * d/t/run-tests: Honor DEB_BUILD_OPTIONS=terse -- Rafael Laboissiere Sun, 02 Sep 2018 05:36:11 -0300 xmds2 (2.2.3+dfsg-10) unstable; urgency=medium * d/t/control: Add dependency on fonts-freefont-otf -- Rafael Laboissiere Sat, 23 Jun 2018 17:59:37 -0300 xmds2 (2.2.3+dfsg-9) unstable; urgency=medium * Build-depend on fonts-freefont-otf. Ensure that the plotting commands in unit test lorenz.m (Octave code) will work in an auto-build/autopkgtest environment. * Use correct version numbers in X-Python-Version header. Only versions present from oldstable until unstable are allowed in this field. * Proper dependencies on python-cheetah. The templates on which xmds2 is based need recompilation for each major version of the Cheetah engine. We enforce now a strict dependency on the major of Cheetah with which the package is built. -- Rafael Laboissiere Sat, 23 Jun 2018 05:23:53 -0300 xmds2 (2.2.3+dfsg-8) unstable; urgency=medium * Add versioned (automatically generated) dependency on python-cheetah -- Rafael Laboissiere Wed, 20 Jun 2018 21:52:43 -0300 xmds2 (2.2.3+dfsg-7) unstable; urgency=medium * d/t/run-tests: Define OMPI_MCA_rmaps_base_oversubscribe. This variable was previously defined in d/rules and the setting was not taken into account by autokgtest at the Debian CI infrastructure. -- Rafael Laboissiere Sun, 06 May 2018 15:15:14 -0300 xmds2 (2.2.3+dfsg-6) unstable; urgency=medium * Migrate get-orig-source into debian/watch * d/control: Bump Standards-Version to 4.1.4 * d/rules: + Oversubscribe nodes for MPI unit tests (Closes: 897501) + Honor DEB_BUILD_OPTIONS in target override_dh_auto_test -- Rafael Laboissiere Fri, 04 May 2018 03:33:06 -0300 xmds2 (2.2.3+dfsg-5) unstable; urgency=medium * d/control: Build-depend on libhdf5-dev instead of transitional libhdf5-serial-dev (Closes: 879150) -- Rafael Laboissiere Mon, 08 Jan 2018 18:07:16 -0200 xmds2 (2.2.3+dfsg-4) unstable; urgency=medium * Use debhelper compatibility level 11 * d/xmds2-doc.doc-base: Use new (debhelper compat 11) paths for files * d/control: + Bump Standards-Version to 4.1.3 (no changes needed) + Use Debian's GitLab URLs in Vcs-* headers -- Rafael Laboissiere Thu, 28 Dec 2017 16:54:06 -0200 xmds2 (2.2.3+dfsg-3) unstable; urgency=medium * d/control: Use cgit URL in Vcs-Browser * d/u/metadata: Fix FAQ URL * d/control: Bump Standards-Version to 4.1.1 (no changes needed) * Add support for autopkgtest * d/clean: New file -- Rafael Laboissiere Sat, 07 Oct 2017 04:03:47 -0300 xmds2 (2.2.3+dfsg-2) unstable; urgency=medium * d/copyright: Use secure URL in Format * d/watch: Upgrade to version 4 * d/control: Bump Standards-Version to 4.0.0 (no changes needed) * Ensure reproducible build + d/fix-cheetah-build-str.py: New script for replacing timestamp and build paths generated by Cheetah + d/control: Build-depends on python-debian and python-dateutil + d/rules: Call fix-cheetah-build-str.py in the override_dh_auto_install rule -- Rafael Laboissiere Thu, 29 Jun 2017 17:48:08 -0300 xmds2 (2.2.3+dfsg-1) unstable; urgency=medium * New upstream version 2.2.3+dfsg * d/copyright: Reflect upstream changes * Drop patch (applied upstream): + d/p/spelling-fix-in-manpage.patch + d/p/pyparsing-dict.patch + d/p/indexing-with-scalars.patch * d/s/lintian-overrides: Drop unused Lintian overrides * d/rules: Run unit tests in verbose mode -- Rafael Laboissiere Fri, 03 Feb 2017 18:49:15 -0200 xmds2 (2.2.2+dfsg-3) unstable; urgency=medium * Bump debhelper compat level to 10 * Bump Standards-Version to 3.9.8 (no changes needed) * d/watch: Avoid listing the xmds-doc tarballs * d/u/metadata: Add citation * d/s/lintian-overrides: Refresh for new Lintian behavior * d/control: Use secure URIs in VCS fields * d/p/spelling-fix-in-manpage.patch: New patch * d/p/pyparsing-dict.patch: New patch * d/p/indexing-with-scalars.patch: New patch -- Rafael Laboissiere Sun, 15 Jan 2017 18:05:09 -0200 xmds2 (2.2.2+dfsg-2) unstable; urgency=medium * d/control: + Update to ligsl-dev in Build-Depends and Depends + Add dh-python and gnuplot-nox to Build-Depends -- Rafael Laboissiere Wed, 16 Dec 2015 10:36:26 +0100 xmds2 (2.2.2+dfsg-1) unstable; urgency=low * Imported Upstream version 2.2.2+dfsg * d/watch: Mangle RC part of upstream tarball name -- Rafael Laboissiere Tue, 14 Oct 2014 07:05:55 -0300 xmds2 (2.2.1+dfsg-1) unstable; urgency=low * Imported Upstream version 2.2.1+dfsg * Add python-mpmath and python-scipy to Suggests * Drop patch parse-dep-relationship.patch (fixed in python-minimal 2.7.8-1) * Drop patch remove-non-dfsg-code.patch (applied upstream) * Drop patch show-library-name.patch (applied upstream) * Drop patch wscript-hdf5.patch (applied upstream) -- Rafael Laboissiere Tue, 30 Sep 2014 22:06:15 -0300 xmds2 (2.2.0+dfsg1-4) unstable; urgency=low * Link against installed versions of files underscore.js and jquery.js. The xmds2-doc package now depends on libjs-jquery and libjs-underscore, complying with section 4.13 of the Debian Policy. * debian/patches/show-library-name.patch: New patch * Bump to Standards-Version 3.9.6, no changes needed * wscript-hdf5.patch: New patch for getting the correct flags for HDF5. Thanks to Gilles Filippini * d/copyright: Specify BSD licenses * Replace hyperlinks to Mathjax website by local ones in libjs-mathjax -- Rafael Laboissiere Sun, 21 Sep 2014 12:18:57 -0300 xmds2 (2.2.0+dfsg1-3) unstable; urgency=medium * Support hdf5 1.8.13 new packaging layout. Thanks to Gilles Filippini for the patch (Closes: 756702) -- Rafael Laboissiere Sat, 02 Aug 2014 10:17:24 +0200 xmds2 (2.2.0+dfsg1-2) unstable; urgency=medium * Team upload. [ Rafael Laboissiere ] * debian/source/options: Add diff-ignore options for dpkg-source * Install only *.xmds files in the example directory * Add dependency on python-pkg-resources * Override Lintian errors on missing sources for some *.js files * Do not use Xvfb to run the lorenz example with Octave -- Sébastien Villemot Wed, 09 Apr 2014 20:04:29 +0200 xmds2 (2.2.0+dfsg1-1) unstable; urgency=medium * Team upload. [ Rafael Laboissiere ] * Imported Upstream version 2.2.0+dfsg1 In this new tarball, the automatically built file VectorInitialisationFromXSIL.py is removed, because it contains DFGS-incompatible code. * debian/copyright: Include the above file in the Files-Excluded list -- Sébastien Villemot Sun, 02 Feb 2014 09:14:27 +0100 xmds2 (2.2.0+dfsg-1) unstable; urgency=medium * Team upload. [ Rafael Laboissiere ] * Imported Upstream version 2.2.0+dfsg * Make the package DFSG-compliant (Closes: #736413): + debian/copyright Drop non-GFDL documentation files from the tarball + The tarball is now repacked (hence the "+dfsg" suffix in the upstream version number) + debian/watch: Change uscan rule accordingly, for mangling the "+dfsg" suffix in the upstream tarball name + debian/patches/remove-non-dfsg-code.patch: New patch for removing non-dfsg code in VectorInitialisationFromXSIL.tmpl + debian/copyright: Specify the licenses of files in documentation/_static * Also, drop from the upstream tarball the *.jar and *.pyc files, which are automatically built (Lintian warning) -- Sébastien Villemot Thu, 30 Jan 2014 23:09:43 +0100 xmds2 (2.2.0-1) unstable; urgency=medium * Team upload. [ Rafael Laboissiere ] * debian/patches/revision-number-as-deb-pkg.patch: New patch. This patch inserts the Debian package number in the notice shown by xmds2 and xsil2graphics2 at launching. * Imported Upstream version 2.2.0 * Drop patches (applied upstream): + interpreter-name-in-shebang.patch + operator-bashism.patch + drop-dependency-on-sphinx.patch + string-quote-in-run-tests.patch * Add package xmds2-doc, with HTML and PDF forms of user documentation * debian/copyright: Reflect upstream changes * Drop dependencies on Cheetah, pyparsing and mpmath (guessed by dh_python2) * Drop useless dependency on python-setuptools * Use the appropriate version range in X-Python-Version * debian/patches/parse-dep-relationship.patch: New patch -- Sébastien Villemot Wed, 15 Jan 2014 20:41:10 +0100 xmds2 (2.1.4-1) unstable; urgency=low [ Rafael Laboissiere ] * Initial version for Debian (Closes: #597014, #734262) * debian/source/format: 3.0 (quilt) * debian/control: + Add mandatory build-dependency on python + Declare package to be architecture-independent + Drop unused build-dependency on cdbs + Drop useless dependencies on python-markdown + Drop ${shlibs:Depends} (this is an arch:all package) + Bump Standards-Version to 3.9.5 + Declare the Debian Science Team as the maintainer + Use XS-Python-Version instead of deprecated XB-Python-Version + Drop duplicated dependency on python-pyparsing + Set Section to "science" and Priority to "extra" + Add Vcs-{Git,Browser} fields + Add paragraph to the Description field about the differences to xmds v1 + Add dependency to libfftw3-mpi-dev and libgsl0-dev + Replace dependencies on mpich2 by mpi-default-{dev,bin} + Build-depend on all run-time dependencies, such that the unit test suite works + Add my name to the list of Uploaders * debian/rules: + Remove the build directory in the clean rule + Run the lorenz.xmds example as unit test + Run the unit test suite run_tests.py * debian/watch: Add file for uscan * Bump the debhelper compatibility level to 9 * debian/copyright: + DEP-5-compliant + Add licenses for third-party software (waf, dSFMT, and Solirte) * debian/docs: Drop the COPYRIGHT file (redundant with debian/copyright) * New patch interpreter-name-in-shebang.patch * New patch operator-bashism.patch * New patch drop-dependency-on-sphinx.patch * New patch string-quote-in-run-tests.patch [ Andreas Tille ] * debian/control: Priority: optional * cme fix dpkg-copyright -- Rafael Laboissiere Wed, 08 Jan 2014 10:17:41 +0100 xmds2 (2.1.2-1-20121121) wheezy-evmik; urgency=low * Debianization -- Eugeniy Mikhailov Wed, 21 Nov 2012 15:11:20 -0500