Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: ViennaRNA
Source: https://www.tbi.univie.ac.at/RNA/
https://github.com/ViennaRNA/ViennaRNA/releases
Files-Excluded:
src/json
src/libsvm-*
src/cthreadpool
doc/latex
doc/html
doc/RNAlib-*.pdf
RNA-Tutorial/Data/programs/alifoldz_adopted.tar.gz
RNA-Tutorial/Data/programs/qrna-2.0.3d.tar.gz
Makefile.in
*/Makefile.in
*/*/Makefile.in
RNA-Tutorial/RNA-tutorial-*.pdf
*/*eps-converted-to.pdf
*/aclocal.m4
src/*_cmdl.h
src/*_cmdl.c
compile
config/ar-lib
config/compile
config/config.guess
config/config.sub
config/depcomp
config.guess
config.h.in
config/install-sh
config/ltmain.sh
config/missing
config.sub
config/test-driver
config/texinfo.tex
configure
depcomp
ylwrap
m4/libtool.m4
missing
src/ViennaRNA/static/misc/dna_mathews1999.hex
src/ViennaRNA/static/misc/dna_mathews2004.hex
src/ViennaRNA/static/misc/rna_andronescu2007.hex
src/ViennaRNA/static/misc/rna_langdon2018.hex
src/ViennaRNA/static/misc/rna_misc_special_hairpins.hex
src/ViennaRNA/static/misc/rna_turner1999.hex
src/ViennaRNA/static/misc/rna_turner2004.hex
src/ViennaRNA/static/postscript/aln_macro_base.hex
src/ViennaRNA/static/postscript/dot_plot_macro_base.hex
src/ViennaRNA/static/postscript/dot_plot_macro_linear_data.hex
src/ViennaRNA/static/postscript/dot_plot_macro_sc_motifs.hex
src/ViennaRNA/static/postscript/dot_plot_macro_sd.hex
src/ViennaRNA/static/postscript/dot_plot_macro_turn.hex
src/ViennaRNA/static/postscript/dot_plot_macro_ud.hex
src/ViennaRNA/static/postscript/structure_plot_macro_base.hex
src/ViennaRNA/static/postscript/structure_plot_macro_extras.hex
man/RNA2Dfold.1
man/RNALalifold.1
man/RNALfold.1
man/RNAPKplex.1
man/RNAaliduplex.1
man/RNAalifold.1
man/RNAcofold.1
man/RNAdistance.1
man/RNAdos.1
man/RNAduplex.1
man/RNAeval.1
man/RNAfold.1
man/RNAheat.1
man/RNAinverse.1
man/RNAlib.info
man/RNApaln.1
man/RNAparconv.1
man/RNApdist.1
man/RNAplex.1
man/RNAplfold.1
man/RNAplot.1
man/RNApvmin.1
man/RNAsnoop.1
man/RNAsubopt.1
man/RNAup.1
man/ct2db.1
src/Kinfold/cmdline.c
src/Kinfold/cmdline.h
src/Kinfold/config.h.in
src/Kinwalker/config.h.in
src/RNAforester/config.h.in
src/RNAforester/src/anchors/shape.cpp
src/RNAforester/src/anchors/shape.hpp
src/RNAlocmin/RNAlocmin_cmdline.c
src/RNAlocmin/RNAlocmin_cmdline.h
src/RNAlocmin/config.h.in
*/autom4te.cache
doc/refman-html
install-sh
interfaces/Perl/RNA.pm
interfaces/Perl/RNA_wrap.cpp
interfaces/Perl/version.i
interfaces/Python3/RNA.py
interfaces/Python3/RNA_wrap.cpp
interfaces/Python3/version.i
packaging/macosx/resources/welcome.txt
src/Kinfold/INSTALL
src/Kinfold/configure
src/Kinwalker/configure
src/RNAforester/INSTALL
src/RNAforester/configure
src/RNAforester/g2-0.72/configure
src/RNAlocmin/configure
src/ViennaRNA/static/energy_parameter_sets.h
src/ViennaRNA/static/templates_postscript.h
src/*/ylwrap
src/*/install-sh
src/*/depcomp
src/*/missing
src/*/compile
src/*/config.sub
src/*/config.guess
src/RNAforester/g2-0.72/include
RNA-Tutorial/Data/programs
m4/lt~obsolete.m4
m4/ltversion.m4
m4/ltoptions.m4
m4/ltsugar.m4
Files: *
Copyright: 2009 Ivo Hofacker <ivo@tbi.univie.ac.at>
License: non-free
Disclaimer and Copyright
.
The programs, library and source code of the Vienna RNA Package are free
software. They are distributed in the hope that they will be useful
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
.
Permission is granted for research, educational, and commercial use
and modification so long as 1) the package and any derived works are not
redistributed for any fee, other than media costs, 2) proper credit is
given to the authors and the Institute for Theoretical Chemistry of the
University of Vienna.
.
If you want to include this software in a commercial product, please contact
the authors.
.
Note that the file ./src/ViennaRNA/plotting/naview.c has its own
copyright attached.
Files: src/ViennaRNA/naview.c
Copyright: 1988 Robert E. Bruccoleri
License: non-commercial
Copying of this software, in whole or in part, is permitted
provided that the copies are not made for commercial purposes,
appropriate credit for the use of the software is given, this
copyright notice appears, and notice is given that the copying
is by permission of Robert E. Bruccoleri. Any other copying
requires specific permission.
Files: src/RNAforester/*
Copyright: 2012-2017 Matthias Hoechsmann (mhoechsm@techfak.uni-bielefeld.de)
Stefanie Schirmer (sschirme@techfak.uni-bielefeld.de)
License: non-free_no-fee
The programs and source code of RNAforester are free
software. They are distributed in the hope that they will be useful
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
.
Permission is granted for research, educational, and commercial use
and modification so long as 1) the package and any derived works are not
redistributed for any fee, other than media costs, 2) proper credit is
given to the authors.
Files: debian/*
Copyright: 2011 Alex Mestiashvili <alex@biotec.tu-dresden.de>
2011 Andreas Tille <tille@debian.org>
2014 Olivier Sallou <osallou@debian.org>
2019-2020 Steffen Moeller <moeller@debian.org>
License: GPL-2+
This program is free software; you can redistribute it
and/or modify it under the terms of the GNU General Public
License as published by the Free Software Foundation; either
version 2 of the License, or (at your option) any later
version.
.
This program is distributed in the hope that it will be
useful, but WITHOUT ANY WARRANTY; without even the implied
warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
PURPOSE. See the GNU General Public License for more
details.
.
You should have received a copy of the GNU General Public
License along with this package; if not, write to the Free
Software Foundation, Inc., 51 Franklin St, Fifth Floor,
Boston, MA 02110-1301 USA
.
On Debian systems, the full text of the GNU General Public
License version 2 can be found in the file
`/usr/share/common-licenses/GPL-2'.