ariba (2.14.7+ds-5) unstable; urgency=medium * Team upload. * Fix Python3.12 syntax warnings Closes: #1085332 * Standards-Version: 4.7.0 (routine-update) -- Andreas Tille Wed, 04 Dec 2024 17:25:45 +0100 ariba (2.14.7+ds-4) unstable; urgency=medium * Team upload. * d/rules: Fix the way that test_load_fasta_files_and_write_clusters_file test is skipped whether non-supported Python3 versions is building (Closes: #1085587). -- Emmanuel Arias Mon, 04 Nov 2024 23:46:11 -0300 ariba (2.14.7+ds-3) unstable; urgency=medium * Team upload. * d/rules: Skip test_load_fasta_files_and_write_clusters_file test for non-supported Python3 versions. Spades need to be built for all supported Python3 before remove the skip (Closes: #1085587). -- Emmanuel Arias Sat, 02 Nov 2024 18:13:20 -0300 ariba (2.14.7+ds-2) unstable; urgency=medium * Team upload. * Fix autopkgtest by replacing distutils Closes: #1061784 * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) -- Andreas Tille Thu, 01 Feb 2024 09:14:37 +0100 ariba (2.14.7+ds-1) unstable; urgency=medium * New upstream version 2.14.7+ds * port-to-pytest.patch: remove: applied upstream. * mpileup-1.16.patch: remove: applied upstream. * add-testdata.patch: refresh. * adjust-bowtie2-test.patch: remove: fixed upstream. * skip-cluster-test.patch: remove: fixed upstream. * disable-tests-with-internet-access.patch: forwarding not-needed. -- Étienne Mollier Sat, 14 Oct 2023 11:24:46 +0200 ariba (2.14.6+ds-5) unstable; urgency=medium * d/salsa-ci.yml: disable i386 run due to missing B-D. * d/control: bring back support for all python3 versions. * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.6.2. -- Étienne Mollier Sat, 07 Jan 2023 15:13:14 +0100 ariba (2.14.6+ds-4) unstable; urgency=medium [ Andreas Tille ] * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) * Add salsa-ci file (routine-update) [ Étienne Mollier ] * mpileup-1.16.patch: add; fix mpileup calls since htslib 1.16. (Closes: #1021675, #1022508) * skip-cluster-test.patch: add; skip due to mismatched output. * adjust-bowtie2-test.patch: skip some bowtie2 tests needing refresh. * d/control: don't built for python3.11 until pysam supports it. -- Étienne Mollier Wed, 14 Dec 2022 21:34:16 +0100 ariba (2.14.6+ds-3) unstable; urgency=medium * Team Upload. * Switch from nosetest -> pytest -- Nilesh Patra Sun, 19 Dec 2021 00:26:03 +0530 ariba (2.14.6+ds-2) unstable; urgency=medium * Fix d/watch to work with GitHub link structure. * Add Rules-Requires-Root. * Bump Standards-Version. * Update watchfile version. -- Sascha Steinbiss Tue, 28 Sep 2021 21:55:29 +0200 ariba (2.14.6+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Sun, 13 Sep 2020 18:34:46 +0200 ariba (2.14.5+ds-3) unstable; urgency=medium * Only build-depend on spades on amd64. -- Sascha Steinbiss Fri, 03 Jul 2020 19:55:45 +0200 ariba (2.14.5+ds-2) unstable; urgency=medium [ Andreas Tille ] * Build-Depends: spades * Suggests: spades [ Sascha Steinbiss ] * Add patch to fix test failures. Closes: #963332 * Add patch to call SPAdes correctly. * Add upstream metadata. * Use debhelper 13. -- Sascha Steinbiss Tue, 30 Jun 2020 12:32:39 +0200 ariba (2.14.5+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Fri, 22 May 2020 10:45:32 +0200 ariba (2.14.4+ds-2.1) unstable; urgency=medium * Non-maintainer upload. * Build for all supported python3 versions to fix test failures in complex Python environments and ease python3 transitions (Closes: #951944) -- Scott Kitterman Tue, 24 Mar 2020 11:14:59 -0400 ariba (2.14.4+ds-2) unstable; urgency=medium * Add B-D on dh-python to fix FTBFS. * Use debhelper-compat. * Bump Standards-Version. -- Sascha Steinbiss Fri, 24 Jan 2020 07:40:24 +0100 ariba (2.14.4+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Thu, 26 Sep 2019 10:32:46 +0200 ariba (2.14.3+ds-1) unstable; urgency=medium * New upstream release. * Bump Standards-Version. * Use debhelper 12. * Add patch headers. -- Sascha Steinbiss Mon, 09 Sep 2019 21:06:06 +0200 ariba (2.14.2+ds-1) unstable; urgency=medium * New upstream release. * Make sure all testdata is installed before running after-build tests. * Disable tests attempting Internet access. -- Sascha Steinbiss Mon, 08 Jul 2019 18:06:19 +0200 ariba (2.13.3+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Sat, 05 Jan 2019 10:34:41 +0000 ariba (2.13.2+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Sun, 23 Dec 2018 14:40:20 +0000 ariba (2.13.1+ds-1) unstable; urgency=medium * New upstream release. * Add new dependency to biopython. -- Sascha Steinbiss Wed, 21 Nov 2018 16:29:34 +0100 ariba (2.12.1+ds-3) unstable; urgency=medium * Team upload. * Should Build-Depend: python3-dev instead of python3-all-dev since it is just an application that simply goes with the default Python version * Standards-Version: 4.2.1 * Versioned (Build-)Depends: libfml(0|-dev) (>= 0.1-4~) -- Andreas Tille Thu, 25 Oct 2018 13:19:53 +0200 ariba (2.12.1+ds-2) unstable; urgency=medium * Team upload. * Build-Depends: python3-all-dev (instead of python3-all and python3-dev) Closes: #905616 * Standards-Version: 4.2.0 * cme fix dpkg-control -- Andreas Tille Thu, 16 Aug 2018 08:05:21 +0200 ariba (2.12.1+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Wed, 20 Jun 2018 11:00:31 +0200 ariba (2.12.0+ds-1) unstable; urgency=medium * New upstream release. * Remove obsolete python version hint in d/control. * Bump to debhelper 11. -- Sascha Steinbiss Tue, 15 May 2018 17:08:54 +0200 ariba (2.11.1+ds-3) unstable; urgency=medium [ Steffen Möller ] * Update SciCrunch RRID in d/u/metadata. [ Sascha Steinbiss ] * Remove distutils again from runtime deps. Closes: #894903 * Use Salsa Vcs-* URLs. * Bump Standards-Version. -- Sascha Steinbiss Fri, 13 Apr 2018 07:15:32 +0200 ariba (2.11.1+ds-2) unstable; urgency=medium * add distutils as runtime dependency -- Sascha Steinbiss Fri, 23 Mar 2018 07:23:32 +0100 ariba (2.11.1+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Mon, 05 Mar 2018 00:29:24 +0100 ariba (2.11.0+ds-2) unstable; urgency=medium * Fix watchfile to not report non-release tags (with '-X' suffix). -- Sascha Steinbiss Sat, 10 Feb 2018 12:26:13 +0100 ariba (2.11.0+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Mon, 05 Feb 2018 09:47:29 +0100 ariba (2.10.3+ds-2) unstable; urgency=medium * Add d/upstream/metadata. Thanks to Steffen Moeller for providing registry information. * Bump Standards-Version. * Require Python3 version in d/control. * Clean up test override target in d/rules. * Remove obsolete Testsuite entry in d/control. * Clean up unused patches from patch dir. * Use secure copyright format link in d/copyright. * Use debhelper 10. -- Sascha Steinbiss Tue, 30 Jan 2018 10:28:08 +0100 ariba (2.10.3+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Tue, 28 Nov 2017 17:01:36 +0100 ariba (2.10.1+ds-1) unstable; urgency=medium * New upstream release. Closes: #870362 -- Sascha Steinbiss Tue, 15 Aug 2017 10:37:13 +0200 ariba (2.10.0+ds-1) unstable; urgency=medium * New upstream release. * Bump Standards-Version. -- Sascha Steinbiss Wed, 28 Jun 2017 22:59:02 +0200 ariba (2.9.4+ds-2) unstable; urgency=medium * Upload to unstable. -- Sascha Steinbiss Sun, 18 Jun 2017 10:30:10 +0000 ariba (2.9.4+ds-1) experimental; urgency=medium * New upstream version. -- Sascha Steinbiss Mon, 29 May 2017 16:58:51 +0200 ariba (2.9.3+ds-1) experimental; urgency=medium * New upstream version. -- Sascha Steinbiss Fri, 28 Apr 2017 16:54:06 +0200 ariba (2.9.2+ds-1) experimental; urgency=medium * New upstream version. -- Sascha Steinbiss Thu, 27 Apr 2017 10:01:07 +0200 ariba (2.7.2+ds-1) experimental; urgency=medium * Team upload. [ Sascha Steinbiss ] * New upstream release. * Raise version requirement for pymummer dep to 0.10.2. * Fix dependency version requirement for pysam. [ Andreas Tille ] * Adapt to fermi-lite changes that do not create conflict with libbwa -- Andreas Tille Fri, 10 Feb 2017 08:55:21 +0100 ariba (2.7.1+ds-1) unstable; urgency=medium * New upstream release. * Raise version requirement for dendropy build-dep to 4.2.0. -- Sascha Steinbiss Fri, 27 Jan 2017 17:48:41 +0100 ariba (2.7.0+ds-1) unstable; urgency=medium * New upstream release. * Add new dep on python3-bs4 (BeautifulSoup4). -- Sascha Steinbiss Tue, 17 Jan 2017 12:06:52 +0100 ariba (2.6.1+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Wed, 21 Dec 2016 19:14:35 +0000 ariba (2.6.0+ds-1) unstable; urgency=medium * New upstream release. * Adjust dependency versions in d/control. -- Sascha Steinbiss Wed, 21 Dec 2016 10:45:02 +0000 ariba (2.5.1+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Mon, 05 Dec 2016 09:58:45 +0000 ariba (2.5.0+ds-1) unstable; urgency=medium * New upstream release. * Adjust dependency versions in d/control. -- Sascha Steinbiss Fri, 18 Nov 2016 19:57:10 +0000 ariba (2.4.0+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Wed, 02 Nov 2016 10:51:12 +0100 ariba (2.3.0+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Wed, 12 Oct 2016 16:00:09 +0000 ariba (2.2.5+ds-1) unstable; urgency=medium * New upstream release. * Drop dependency on samtools and bcftools. -- Sascha Steinbiss Wed, 31 Aug 2016 13:24:41 +0000 ariba (2.2.4+ds-1) unstable; urgency=medium * New upstream release. * Adjust pymummer dependency to min version 0.8.1. -- Sascha Steinbiss Wed, 24 Aug 2016 08:14:05 +0000 ariba (2.2.3+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Tue, 23 Aug 2016 12:00:19 +0000 ariba (2.2.2+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Mon, 22 Aug 2016 17:10:32 +0000 ariba (2.2.1+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Thu, 18 Aug 2016 20:32:37 +0000 ariba (2.2.0+ds-1) unstable; urgency=medium * New upstream release. -- Sascha Steinbiss Thu, 18 Aug 2016 15:03:08 +0000 ariba (2.1.0+ds-1) unstable; urgency=medium * New upstream release. * Adjust dependencies to new upstream requirements. * Drop patches applied by upstream or made obsolete. * Add bindnow hardening. * Simplify manpage building. * Change architecture to any as ariba now builds native Python extensions. * Add shlibs:Depends for ariba binary package. * d/watch: use zip file from GitHub due to long filenames in tarball -- Sascha Steinbiss Thu, 04 Aug 2016 10:19:46 +0000 ariba (1.0.1-1) unstable; urgency=medium * New upstream release. * Update uploader email. -- Sascha Steinbiss Tue, 28 Jun 2016 14:24:04 +0000 ariba (1.0.0-1) unstable; urgency=low * Initial packaging (Closes: #825529) -- Sascha Steinbiss Fri, 27 May 2016 10:45:11 +0000