bcftools (1.19-1) unstable; urgency=medium * New upstream version 1.19 * fix-bus-error-armhf.patch: delete: applied upstream. * skip_new_test_failing_on_32bit.patch: refresh. * tests-pluginpath.patch: refresh. * typo.patch: new: fix typos caught by lintian. -- Étienne Mollier Fri, 15 Dec 2023 11:59:02 +0100 bcftools (1.18-2) unstable; urgency=medium * skip_new_test_failing_on_32bit.patch: refresh. * tests-pluginpath.patch: refresh. * fix-bus-error-armhf.patch: new: fix Bus errors. Thanks to Rob Davies (Closes: #1055669) -- Étienne Mollier Thu, 23 Nov 2023 12:01:34 +0100 bcftools (1.18-1) unstable; urgency=medium * Team upload. * New upstream version -- Andreas Tille Wed, 08 Nov 2023 09:14:28 +0100 bcftools (1.17-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.6.2 (routine-update) * d/lintian-overrides: update mismatched override. * 2to3.patch: declare forwarding unneeded. Only changes are the shebang and future import, making the initial script somewhat agnistic of the python major version, and the patch enforces use of python3. * skip_new_test_failing_on_32bit.patch: use the Bug field. The patch was initially documenting upstream issue with a Bug-Upstream field instead of using the dedicated Bug field from DEP3, confusing scanners to identify outstanding problems left to forward upstream. -- Étienne Mollier Fri, 23 Jun 2023 18:27:42 +0200 bcftools (1.16-1) unstable; urgency=medium * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) -- Andreas Tille Fri, 30 Sep 2022 11:48:40 +0200 bcftools (1.14-1~exp1) experimental; urgency=medium * Team upload. * New upstream version * Remove unnecessary Breaks/Replaces * Bump versioned Build-Depends: libhts-dev (>= 1.14) * Add lintian-override for script-with-language-extension -- Andreas Tille Tue, 07 Dec 2021 09:08:19 +0100 bcftools (1.13-1) unstable; urgency=medium [ Steffen Moeller ] * New upstream version * Standards-Version: 4.5.1 (routine-update) * No tab in license text (routine-update) * watch file standard 4 (routine-update) [ Étienne Mollier ] * Standards-Version: 4.6.0 (routine-update) * Use secure URI in Homepage field. * d/control: add myself to uploaders -- Étienne Mollier Fri, 27 Aug 2021 16:36:54 +0200 bcftools (1.11-1) unstable; urgency=medium * Team upload. * New upstream version * Versioned Build-Depends: libhts-dev (>= 1.11) -- Andreas Tille Thu, 01 Oct 2020 15:43:46 +0200 bcftools (1.10.2-4) unstable; urgency=medium * Fix suggested Python packages Closes: #965032 -- Andreas Tille Tue, 14 Jul 2020 22:39:24 +0200 bcftools (1.10.2-3) unstable; urgency=medium * Team upload. * Depends on Perl demoted to Recommends Closes: #962834 * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. -- Andreas Tille Wed, 17 Jun 2020 11:41:35 +0200 bcftools (1.10.2-2) unstable; urgency=medium * Fix build on i386 by using SSE2 -- Michael R. Crusoe Thu, 02 Jan 2020 13:58:57 +0100 bcftools (1.10.2-1) unstable; urgency=medium * New upstream version * debhelper-compat 12 -- Michael R. Crusoe Wed, 25 Dec 2019 17:58:32 +0100 bcftools (1.10-1) unstable; urgency=medium * New upstream release. * Restore i386 as libhts/tabix has restored it. * Add myself as an uploader -- Michael R. Crusoe Mon, 16 Dec 2019 16:17:57 +0100 bcftools (1.9-2) unstable; urgency=medium * Team upload. * Remove now-unneeded lintian-override * Remove i386 as libhts/tabix has dropped it * Temporarily disable failing plugins tests * Remove trailing whitespace in debian/copyright * Standards-Version: 4.3.0, no changes needed -- Michael R. Crusoe Tue, 06 Aug 2019 19:32:16 +0200 bcftools (1.9-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.2.1 * Fix Perl interpreter PATH -- Andreas Tille Tue, 04 Sep 2018 16:37:32 +0200 bcftools (1.8-1) unstable; urgency=medium * Team upload. * New upstream version * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.4 * debhelper 11 -- Andreas Tille Fri, 20 Apr 2018 11:36:02 +0200 bcftools (1.7-2) unstable; urgency=medium * Team upload. * Follow hint of Graham Inggs to skip single test that is new in this version Closes: #890704 -- Andreas Tille Tue, 20 Feb 2018 16:32:47 +0100 bcftools (1.7-1) unstable; urgency=medium * Team upload * New upstream version * Standards-Version: 4.1.3 * d/rules: drop useless option --parallel -- Andreas Tille Sat, 17 Feb 2018 15:00:09 +0100 bcftools (1.6-3) unstable; urgency=medium * Team upload * Upload to unstable -- Andreas Tille Thu, 14 Dec 2017 16:09:29 +0100 bcftools (1.6-2) experimental; urgency=medium * Team upload * Apply patch from upstream to reduce failing tests on different architectures. Addresses bug #870060 -- Andreas Tille Wed, 13 Dec 2017 15:57:03 +0100 bcftools (1.6-1) experimental; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.1.2 -- Andreas Tille Mon, 11 Dec 2017 13:28:56 +0100 bcftools (1.5-4) unstable; urgency=medium * Team upload. * Add debian/clean to fix FTBFSx2 * Update patches as they were applied upstream * Bump versioned Build-Depends on htslib to make sure we pick up versioned dependency on libhts2 (Closes: #881331) -- Graham Inggs Fri, 10 Nov 2017 12:41:15 +0000 bcftools (1.5-3) unstable; urgency=medium * Team upload. * Versioned Build-Depends on htslib to avoid FTBFS on armel, armhf and ppc64el -- Andreas Tille Wed, 08 Nov 2017 08:26:51 +0100 bcftools (1.5-2) unstable; urgency=low * Incorporate lost changes from 1.4.1-3 (Closes: #868958) * Update Standards-Version to 4.1.1 * d/control: use build profiles to mark build-dependencies needed only for running tests -- Afif Elghraoui Thu, 12 Oct 2017 00:14:38 -0400 bcftools (1.5-1) unstable; urgency=medium * migrate to Unstable -- Afif Elghraoui Sun, 01 Oct 2017 12:39:31 -0400 bcftools (1.5-1~exp1) experimental; urgency=medium [ Afif Elghraoui ] * Update packaging for new build system [ Andreas Tille ] * New upstream version * Bump version in Build-Depends libhts-dev from 1.3.1 to 1.5 * Standards-Version: 4.0.0 (no changes needed) [Steffen Moeller ] * [debian/upstream/metadata] Added registry references for OMICtools, RRID, bio.tools -- Afif Elghraoui Tue, 08 Aug 2017 12:35:44 -0400 bcftools (1.4.1-3) unstable; urgency=medium * Team upload. * Incorporate patches from Ubuntu to fix FTBFS on some 32-bit archs. * Fix autopkgtests by ensuring presence of all deps. -- Sascha Steinbiss Sat, 29 Jul 2017 10:38:27 +0200 bcftools (1.4.1-2) unstable; urgency=medium * Team upload * Fix FTBFS on architectures where char is unsigned by default, thanks Adrian Bunk (Closes: #865060) -- Graham Inggs Wed, 19 Jul 2017 11:00:08 +0200 bcftools (1.4.1-1) unstable; urgency=medium * Team upload * New upstream version Closes: #865006 * debhelper 10 -- Andreas Tille Sun, 18 Jun 2017 21:41:36 +0200 bcftools (1.3.1-1) unstable; urgency=medium * Imported Upstream version 1.3.1 * Remove backported patches * Refresh remaining patches * Bump htslib minimum dependency * Bump Standards-Version to 3.9.8 * Add a manpage for the color-chrs command -- Afif Elghraoui Mon, 25 Apr 2016 22:24:50 -0700 bcftools (1.3-3) unstable; urgency=medium * Backport upstream patch to fix build on arm64, armel, and ppc64el (Closes: #812268) -- Afif Elghraoui Thu, 31 Mar 2016 00:57:18 -0700 bcftools (1.3-2) unstable; urgency=medium * Backport upstream patch to be able to build plugin with GSL2 * Bump Standards-Version * Use encrypted protocols for VCS URLs -- Afif Elghraoui Sun, 21 Feb 2016 16:35:44 -0800 bcftools (1.3-1) unstable; urgency=medium * New upstream release (Closes: #813465) * Disable building with libgsl until build issue with GSL2 is addressed * Update d/TODO to indicate GSL issue forwarded * Simplify d/rules as a result of improvements to build system * Update htslib minimum dependency * Add libhts-dev dependency for CI tests -- Afif Elghraoui Wed, 03 Feb 2016 23:44:03 -0800 bcftools (1.2-2) unstable; urgency=medium * Fix autopkgtest dependencies * Declare conflict with older versions of samtools (Closes: #812328) -- Afif Elghraoui Fri, 22 Jan 2016 18:52:53 -0800 bcftools (1.2-1) unstable; urgency=low * Initial release (Closes: #804007) -- Afif Elghraoui Mon, 09 Nov 2015 23:44:39 -0800