beast2-mcmc (2.7.3+dfsg-1) unstable; urgency=medium * New upstream version * Remove trailing whitespace in debian/copyright (routine-update) * Allow failures in piuparts in Salsa CI -- Andreas Tille Tue, 20 Dec 2022 21:05:50 +0100 beast2-mcmc (2.7.2+dfsg-2) unstable; urgency=medium * Deactivating some start-up actions: - The check for new versions of beast, - The attempt to install the jars elsewhere (Closes: #1025829) * Including the paths to shared libraries in java.library.path when launching beast2-mcmc, beauti2 and treeannotator2 * Raising Standards version to 4.6.2 (no change) -- Pierre Gruet Sun, 18 Dec 2022 15:08:33 +0100 beast2-mcmc (2.7.2+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Fix watch file * Standards-Version: 4.6.1 (routine-update) * Drop unneeded override_dh_auto_build [ Kieran Elmes ] * include /usr/lib/x86_64-linux-gnu in java.library.path [ Pierre Gruet ] * New upstream version 2.7.2+dfsg * Refreshing patches * Refreshing d/copyright * Packaging: - Including the beastfx component in the source, making a MUT package - Excluding JS files with very-long-lines - Stopping building the -doc package, its contents is not in the upstream tarball anymore * Updating dependencies and classpath * Cleaning the d/patches directory * Removing the dependencies of the built jars to alleviate them * debian/rules: - Invoking antlr4 during the build to generate source from grammar files using a Debian-packaged antlr4 version - Overriding the _auto_build and _auto_test rules to call the relevant ant tasks * Managing tests: - Adding an explicit conversion from Double to double to disambiguate an assertion in a test - Skipping tests using the unpackaged javafx - Skipping the test attempting to access the user home directory - Skipping the test needing GPU * Shipping a version.xml file for class loading, retrieving it from its install path * Updating autopkgtests: - Running run-unit-test with xvfb-run as a display would be needed - Running build tests as autopkgtests with junit5 instead of former junit4 -- Pierre Gruet Sun, 13 Nov 2022 14:56:38 +0100 beast2-mcmc (2.6.7+dfsg-1) unstable; urgency=medium * New upstream version 2.6.7+dfsg * Reworking debian/copyright -- Pierre Gruet Fri, 22 Apr 2022 15:59:01 +0200 beast2-mcmc (2.6.6+dfsg-2) unstable; urgency=medium * Lowering heap size on 32 bit architectures -- Pierre Gruet Mon, 23 Aug 2021 16:40:39 +0200 beast2-mcmc (2.6.6+dfsg-1) unstable; urgency=medium * New upstream version 2.6.6+dfsg * Updating d/watch to match new Github release/tag page * Raising Standards version to 4.6.0 (no change) * Exporting LC_ALL in d/rules to care for unmappable characters in source * Refreshing patches -- Pierre Gruet Thu, 19 Aug 2021 17:11:55 +0200 beast2-mcmc (2.6.3+dfsg-2) unstable; urgency=medium * Adding missing runtime dependencies * Simplifying java invocations in files in debian/bin * Adding missing classpath entries and runtime dependencies * Adapting paths to a Debian install in the main class * Adding an autopkgtest by running examples * Adding build-time tests as autopkgtests * Marking Debian-specific patches as Forwarded: not-needed * Providing a doc-base file for registration of pdf docs * Installing files in folders named beast2-mcmc instead of beast-mcmc2 or beast-mcmc * Marking doc and examples packages as Multi-Arch: foreign * Stop using commons-math.jar and documenting in d/README.source -- Pierre Gruet Sat, 03 Oct 2020 14:23:41 +0200 beast2-mcmc (2.6.3+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. [ Pierre Gruet ] * Removing jsign from the build as it is needed for Microsoft Windows * Deleting accents in MCMC.java as they caused build failures * Removing the import of useless and unpackaged org.fest.swing.security -- Andreas Tille Tue, 15 Sep 2020 11:38:30 +0200 beast2-mcmc (2.6.0+dfsg-1) unstable; urgency=medium * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.0 -- Andreas Tille Wed, 31 Jul 2019 14:37:15 +0200 beast2-mcmc (2.5.1+dfsg-2) unstable; urgency=medium * Avoid Mac only code which is not needed and fails due missing support in latest libjam-java Closes: #919728 * debhelper 12 * Standards-Version: 4.3.0 -- Andreas Tille Sat, 26 Jan 2019 08:10:27 +0100 beast2-mcmc (2.5.1+dfsg-1) unstable; urgency=medium [ Steffen Moeller ] * d/u/metadata: - added RRIDs - yamllint cleanliness [ Andreas Tille ] * New upstream version * Point Vcs fields to salsa.debian.org * debhelper 11 * Build-Depends: s/openjdk-8-jdk/default-jdk/ Closes: #894359 * Depends: s/openjdk-8-jre | java8-runtime/default-jre | java9-runtime/ * d/rules: Add antlr4-runtime.jar to CLASS_PATH * Standards-Version: 4.2.1 * d/rules: Do not parse d/changelog [ Jelmer Vernooij ] * Use secure copyright file specification URI. * Trim trailing whitespace. -- Andreas Tille Wed, 05 Dec 2018 07:57:09 +0100 beast2-mcmc (2.4.4+dfsg-1) unstable; urgency=medium * New upstream version * debhelper 10 * d/watch: version=4 -- Andreas Tille Fri, 02 Dec 2016 11:20:11 +0100 beast2-mcmc (2.4.3+dfsg-1) unstable; urgency=medium * New upstream version * d/watch: stop reporting pre-releases -- Andreas Tille Tue, 30 Aug 2016 08:32:05 +0200 beast2-mcmc (2.4.2+dfsg-1) unstable; urgency=medium * New upstream version * Fix beauti2 script * Respect proxy settings in beauti2 script -- Andreas Tille Mon, 18 Jul 2016 13:57:12 +0200 beast2-mcmc (2.4.1+dfsg-1) unstable; urgency=medium * Initial release (Closes: #823396) -- Andreas Tille Wed, 04 May 2016 13:14:47 +0200