bowtie (1.1.1-2) unstable; urgency=high
* Team upload.
* Install missing commands. Closes: #776881.
-- Charles Plessy <plessy@debian.org> Tue, 03 Feb 2015 10:44:39 +0900
bowtie (1.1.1-1) unstable; urgency=medium
* New upstream release
* cme fix dpkg-control
* Another patch to build with SeqAn 1.4 (Thanks to Gert Wollny)
* Add Depends: python (also Build-Depends since it is used in tests)
-- Andreas Tille <tille@debian.org> Thu, 02 Oct 2014 14:32:50 +0200
bowtie (1.0.1-3) unstable; urgency=medium
* Drop all architectures except amd64 since there was no success
in trying to port the code to other architectures. The portability
patch introduced in the last revision was droped again
* debian/copyright: Drop unneeded copyright statements about code that
was removed from upstream source
-- Andreas Tille <tille@debian.org> Mon, 15 Sep 2014 11:00:25 +0200
bowtie (1.0.1-2) unstable; urgency=medium
* Do not use copy of outdated gcc header file which destroys portability
to other architectures
Closes: #756780
* Add README.Debian informing users about the fact that we ignore copy
of cpuid.h
* Add unit tests for build time and autopkgtest
* Add debian/README.test to explain how to test the package
Attention: Please take notice of /usr/share/bowtie/README.Debian about
"Test suite for bowtie created and potential issue with sorting"
-- Andreas Tille <tille@debian.org> Wed, 03 Sep 2014 09:50:22 +0200
bowtie (1.0.1-1) unstable; urgency=medium
* New upstream version (adapted patches)
* drop debian/get-orig-source but rather remove the SeqAn-1.1 code
copy via Files-Excluded
* debian/control: Priority: optional
-- Andreas Tille <tille@debian.org> Wed, 30 Jul 2014 13:38:25 +0200
bowtie (1.0.0-6) unstable; urgency=low
* debian/patches/seqan-popcount.patch: New patch. (Closes: #733398)
* Version 1.4 of seqan-dev is required now.
* Standards-Version: 3.9.5 (no changes needed).
* Updated Vcs-Svn and Vcs-Browse fields as per Debian-Med policy.
-- Ognyan Kulev <ogi@debian.org> Sat, 08 Mar 2014 15:13:16 +0200
bowtie (1.0.0-5) unstable; urgency=low
* Fixed (hopefully) FTBFS by using override_dh_fixperms-indep target
instead of override_dh_fixperms in debian/rules.
-- Ognyan Kulev <ogi@debian.org> Thu, 30 May 2013 09:41:25 +0300
bowtie (1.0.0-4) unstable; urgency=low
* Lintian fixes:
- Removed DM-Upload-Allowed field.
- Standards Version 3.9.4 (no changes needed).
- Remove execute bits on some files in bowtie-examples.
* Don't compress *.ebwt index files in bowtie-examples package.
* Package description now starts with a capital letter.
-- Ognyan Kulev <ogi@debian.org> Wed, 29 May 2013 22:53:13 +0300
bowtie (1.0.0-3) unstable; urgency=low
* New patch no_hash_style_both_for_mips.patch.
This fixes build errors on mips and mipsel.
-- Ognyan Kulev <ogi@debian.org> Wed, 24 Apr 2013 15:15:37 +0300
bowtie (1.0.0-2) unstable; urgency=low
* Requires version 1.3 of SeqAn.
* Updated README.source about using Debian's SeqAn library.
* Removed machine_bits_detection.patch and added disable_bits_flag.patch.
-- Ognyan Kulev <ogi@debian.org> Wed, 24 Apr 2013 10:49:47 +0300
bowtie (1.0.0-1) unstable; urgency=low
* New upstream version. (Closes: #705616)
* Refreshed patches: use_debian_seqan.patch, use-dpkg-buildflags.patch.
* Removed patch gcc-4.7.patch (fixed upstream).
* New patch machine_bits_detection.patch.
* Added build dependancy on seqan-dev.
* Activated use_debian_seqan.patch and added the following patches:
- seqan-fix-setBegin-call.patch
- seqan-rename-ChunkPool.patch
- seqan-rename-fill-to-resize.patch
* Added myself to Uploaders control field.
-- Ognyan Kulev <ogi@debian.org> Tue, 23 Apr 2013 16:43:49 +0300
bowtie (0.12.7-3) unstable; urgency=low
* debian/patches/use-dpkg-buildflags.patch: Regard LDFLAGS/CPPFLAGS
hardening flags (thanks for the patch to Simon Ruderich
<simon@ruderich.org>)
Closes: #670230
-- Andreas Tille <tille@debian.org> Tue, 24 Apr 2012 13:21:32 +0200
bowtie (0.12.7-2) unstable; urgency=low
* Do not give a pointer to non existing info pages in manpages
* debian/control:
- fixed Vcs fields
- Standards-Version: 3.9.3 (no changes needed)
* debian/upstream: Add citation information
* debian/rules: calculate pkg name instead of setting it
* debian/copyright: DEP5 verified using
cme fix dpkg-copyright
* debian/patches/gcc-4.7.patch: function "reverseInPlace" is declared after
the function is used
Thanks to Rodolfo García Peñas <kix@kix.es> and
gregor herrmann <gregoa@debian.org>
Closes: #667120
* debhelper 9 (control+compat)
Hardening flags were explicitly tested but not enforced in debian/rules
-- Andreas Tille <tille@debian.org> Sun, 22 Apr 2012 21:09:05 +0200
bowtie (0.12.7-1) unstable; urgency=low
* Initial release (Closes: #604940)
-- Andreas Tille <tille@debian.org> Wed, 02 Feb 2011 13:47:12 +0100