bowtie2 (2.3.0-2~bpo8+1) jessie-backports; urgency=medium
* Rebuild for jessie-backports.
-- Andreas Tille <tille@debian.org> Tue, 06 Jun 2017 15:30:29 +0200
bowtie2 (2.3.0-2) unstable; urgency=medium
* Team upload.
[ Sascha Steinbiss ]
* Skip tests involving simulated reads to avoid use of non-free build-dep
libmath-random-perl again.
Closes: #852546
* Add libclone-perl build dependency.
[ Alexandre Mestiashvili ]
* Add patch suppressing -Wmisleading-indentation warnings.
[ Steffen Moeller ]
* Adjust EDAM annotations.
-- Sascha Steinbiss <satta@debian.org> Wed, 25 Jan 2017 16:27:13 +0100
bowtie2 (2.3.0-1) unstable; urgency=medium
* Team upload.
[ Andreas Tille ]
* New upstream version
* Code available on Github
* debhelper 10
* Remove Carlos Borroto from Uploaders
* Remove code from test suite that is requiring non-free package
libmath-random-perl
* New Build-Depends to run build time test: liblocal-lib-perl
[ Sascha Steinbiss ]
* Even more new Build-Depends: libmath-random-perl, libtest-deep-perl
* Disable rebuilding during tests
-- Sascha Steinbiss <satta@debian.org> Sat, 14 Jan 2017 07:50:51 +0000
bowtie2 (2.2.9-4) unstable; urgency=medium
* Team upload.
* Make build reproducible by adding compiler flags
setting -fdebug-prefix-map.
-- Sascha Steinbiss <satta@debian.org> Thu, 25 Aug 2016 12:47:33 +0000
bowtie2 (2.2.9-3) unstable; urgency=medium
* Team upload.
* Fix building with GCC 6.
Closes: #831157.
-- Sascha Steinbiss <satta@debian.org> Sat, 16 Jul 2016 03:22:51 +0000
bowtie2 (2.2.9-2) unstable; urgency=medium
* Team upload.
* Make build reproducible.
- Remove embedding of build hostname, time and compiler.
- Fix help2man wrapper heredoc.
- Sort wildcard expansions in Makefile.
- Pin down language settings.
-- Sascha Steinbiss <sascha@steinbiss.name> Sat, 21 May 2016 17:18:25 +0000
bowtie2 (2.2.9-1) unstable; urgency=medium
* Imported Upstream version 2.2.9
* Bump Standards-Version
* Revert the commit with applied patch
* Update hardening.patch
* Cleanup d/rules, remove CPPFLAGS as they are imported anyway
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 28 Apr 2016 09:26:48 +0200
bowtie2 (2.2.8-1~bpo8+1) jessie-backports; urgency=medium
* Rebuild for jessie-backports.
-- Andreas Tille <tille@debian.org> Tue, 22 Mar 2016 09:30:26 +0100
bowtie2 (2.2.8-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version repackaged as xz
* cme fix dpkg-control
[ Alexandre Mestiashvili ]
* Imported Upstream version 2.2.8
* d/rules: export DEB_BUILD_MAINT_OPTIONS = hardening=+all
* d/copyright: Merge Files: stanzas and update years
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Sat, 12 Mar 2016 15:57:34 +0100
bowtie2 (2.2.6-2) unstable; urgency=medium
[ Charles Plessy ]
* d/rules: quote variables contents passed to Makefile, closes: #809076.
-- Andreas Tille <tille@debian.org> Mon, 28 Dec 2015 08:23:51 +0100
bowtie2 (2.2.6-1) unstable; urgency=medium
* Imported Upstream version 2.2.6
* d/rules: WITH_TBB=1
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 28 Aug 2015 09:31:45 +0200
bowtie2 (2.2.5-2) unstable; urgency=medium
* Upload to unstable
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 28 Apr 2015 18:06:34 +0200
bowtie2 (2.2.5-1) experimental; urgency=medium
* Imported Upstream version 2.2.5
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Wed, 18 Mar 2015 10:09:35 +0100
bowtie2 (2.2.4-2) unstable; urgency=medium
* d/control: add python dependency, needed to build bowtie2-build man page
Closes: #769934
* d/watch: fix upstream url parsing, see #766878
* d/rules: remove byte-compiled bowtie2-buildc
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 18 Nov 2014 23:28:33 +0100
bowtie2 (2.2.4-1) unstable; urgency=medium
[ Andreas Tille ]
* d/control: Priority: optional
* add missing DEP3 description
[ Alexandre Mestiashvili ]
* d/test/binary-run: test that binary work
* d/test/control: add binary-run
[ Andreas Tille ]
* New upstream version
* do uscan call directly in debian/rules instead of separate script
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Sun, 26 Oct 2014 07:08:46 +0100
bowtie2 (2.2.3-1) unstable; urgency=medium
* Imported Upstream version 2.2.3
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 03 Jun 2014 16:13:47 +0200
bowtie2 (2.2.2-1) unstable; urgency=medium
* Imported Upstream version 2.2.2
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 15 Apr 2014 13:40:01 +0200
bowtie2 (2.2.1-1) unstable; urgency=medium
* Imported Upstream version 2.2.1
* d/changelog: updated Copyright years
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 07 Mar 2014 09:37:13 +0100
bowtie2 (2.2.0-1) unstable; urgency=medium
[ Alexandre Mestiashvili ]
* Imported Upstream version 2.2.0
[ James McCoy ]
* Move debian/upstream to debian/upstream/metadata
[ Alexandre Mestiashvili ]
* refreshed patches, dropped fix_makefile_machine_detection.patch
* d/control: bump Standards-Version
Architecture: amd64 kfreebsd-amd64, starting from this version
bowtie2 works on amd64 only
added python to Depends:
* d/rules: remove i386 related fixes,rules for new binaries
* d/bowtie2.install: added new binaries introduced by the new version
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 20 Feb 2014 13:29:58 +0100
bowtie2 (2.1.0-2) unstable; urgency=low
* Closes: #713000
* d/control: fixed description for bowtie2-examples,
bumped Standards-Version,
removed DM-Upload-Allowed,
use canonical vcs
* d/tests/: underscore are not allowed for tests
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 25 Jun 2013 13:58:18 +0200
bowtie2 (2.1.0-1) unstable; urgency=low
* - d/help2man-wrapper: as kindly suggested by Andreas Tille
Closes: #701686
- d/rules: use help2man-wrapper instead of help2man to generate man pages
* Imported Upstream version 2.1.0
* refreshed patches
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Wed, 27 Feb 2013 15:58:40 +0100
bowtie2 (2.0.6-1) unstable; urgency=low
* Imported Upstream version 2.0.6
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Tue, 19 Feb 2013 17:30:42 +0100
bowtie2 (2.0.5-1) unstable; urgency=low
* Imported Upstream version 2.0.5
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 11 Jan 2013 11:19:34 +0100
bowtie2 (2.0.4-1) unstable; urgency=low
* Imported Upstream version 2.0.4
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 27 Dec 2012 17:33:36 +0100
bowtie2 (2.0.2-1) unstable; urgency=low
[ Carlos Borroto ]
* Imported Upstream version 2.0.2
* bowtie2_gcc4.7.patch no longer needed
[ Alexandre Mestiashvili ]
* added autopkgtest testsuite
* updated Uploaders field
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Mon, 19 Nov 2012 16:31:02 +0100
bowtie2 (2.0.0-beta7-1) unstable; urgency=low
[ Alexandre Mestiashvili ]
* debian/control force architcures to i386/amd64 kfreebsd-i386/amd64 and
hurd-i386 SSE is not availbale on others. Closes: #668123
* debhelper version 9
* debian/rules forced hardening flags
* hardening.patch to inject hardening CPPFLAGS
* Imported Upstream version 2.0.0-beta7
* debian/bowtie2.lintian-overrides to avoid lintian's waring
to be fixed by using epochs and tilda in upstream version
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Mon, 30 Jul 2012 13:51:31 +0200
bowtie2 (2.0.0-beta6-3) unstable; urgency=low
* normalized architecture detection.
For example kfreebsd-amd64 is detected as an amd64 architecture
and msse flag is set.(Previous commit was wrong) (Closes: #673159)
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 01 Jun 2012 21:58:49 +0200
bowtie2 (2.0.0-beta6-2) unstable; urgency=low
* debian/rules normalized output of dpkg-architecture,
so for example kfreebsd-amd64 is detected as an amd64 architecture
and sse flags are enabled for it.
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Thu, 31 May 2012 19:22:56 +0200
bowtie2 (2.0.0-beta6-1) unstable; urgency=low
* updated debian/watch and get-orig-source to track -source suffix
* Imported Upstream version 2.0.0-beta6
* debian/patches/fix_makefile_machine_detection.patch
use -msse2 only for Intel architectures, Closes: #672526
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Fri, 11 May 2012 08:41:59 +0200
bowtie2 (2.0.0-beta5-2) unstable; urgency=low
[ Alexandre Mestiashvili ]
* file sse_util.h has missing copyright header.
The Author (Benjamin Langmead) has
confirmed that the file is distributed under GPL3 license.
[ Andreas Tille ]
* debian/upstream: Added publication
* debian/patches/fix_makefile_machine_detection.patch + debian/rules:
prevent -mXX and -msse2 switches for non Intel architectures
[ Alexandre Mestiashvili ]
* debian/patches/bowtie2_gcc4.7.patch Closes: #672090
* updated DEP3 headers
* bumperd Standards-Version to 3.9.3
* uname -m doesn't detect 32 bit chroot env - updated patcH
-- Andreas Tille <tille@debian.org> Thu, 26 Apr 2012 13:59:54 +0200
bowtie2 (2.0.0-beta5-1) unstable; urgency=low
[ Alexandre Mestiashvili ]
* Initial release (Closes: #660762)
-- Alexandre Mestiashvili <alex@biotec.tu-dresden.de> Wed, 22 Feb 2012 11:03:03 +0100