Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: CBFlib Upstream-Contact: Herbert J. Bernstein Source: The upstream sources obtained from https://github.com/yayahjb/cbflib/ have been modified by removing files which were unnecessary and of unknown copyright and licence status. See the get-orig-source target in debian/rules for exact list of removed files. Files-Excluded: drel-ply dREL-ply-0.5 external_packages libtool ply-3.2 pycbf/pycbf_0.7.7.zip pycbf/_pycbf.pyd pycbf/pycbf.aux pycbf/pycbf.dvi pycbf/pycbf.log pycbf/pycbf.out pycbf/pycbf.pdf pycbf/pycbf.toc Files: * Copyright: 2006, 2007, 2008, 2010, 2014, 2020 Herbert J. Bernstein License: GPL-2 or LGPL-2.1 YOU MAY REDISTRIBUTE THE CBFLIB PACKAGE UNDER THE TERMS OF THE GPL ALTERNATIVELY YOU MAY REDISTRIBUTE THE CBFLIB API UNDER THE TERMS OF THE LGPL . On Debian systems, the complete text of the GNU General Public License can be found in '/usr/share/common-licenses/GPL-2' and the complete text of the GNU Lesser General Public License in '/usr/share/common-licenses/LGPL-2.1'. . --------------------------------------------------------------------- . Stanford University Notices for the CBFlib software package that incorporates SLAC software on which copyright is disclaimed . This software . The term 'this software', as used in these Notices, refers to those portions of the software package CBFlib that were created by employees of the Stanford Linear Accelerator Center, Stanford University. . Stanford disclaimer of copyright . Stanford University, owner of the copyright, hereby disclaims its copyright and all other rights in this software. Hence, anyone may freely use it for any purpose without restriction. . Acknowledgement of sponsorship . This software was produced by the Stanford Linear Accelerator Center, Stanford University, under Contract DE-AC03-76SFO0515 with the Department of Energy. . Government disclaimer of liability . Neither the United States nor the United States Department of Energy, nor any of their employees, makes any warranty, express or implied, or assumes any legal liability or responsibility for the accuracy, completeness, or usefulness of any data, apparatus, product, or process disclosed, or represents that its use would not infringe privately owned rights. . Stanford disclaimer of liability . Stanford University makes no representations or warranties, express or implied, nor assumes any liability for the use of this software. . Maintenance of notices . In the interest of clarity regarding the origin and status of this software, this and all the preceding Stanford University notices are to remain affixed to any copy or derivative of this software made or distributed by the recipient and are to be affixed to any copy of software made or distributed by the recipient that contains a copy or derivative of this software. . Based on SLAC Software Notices, Set 4 OTT.002a, 2004 FEB 03 . ---------------------------------------------------------------------- . The IUCr Policy for the Protection and the Promotion of the STAR File and CIF Standards for Exchanging and Archiving Electronic Data . Overview . The Crystallographic Information File (CIF)[1] is a standard for information interchange promulgated by the International Union of Crystallography (IUCr). CIF (Hall, Allen & Brown, 1991) is the recommended method for submitting publications to Acta Crystallographica Section C and reports of crystal structure determinations to other sections of Acta Crystallographica and many other journals. The syntax of a CIF is a subset of the more general STAR File[2] format. The CIF and STAR File approaches are used increasingly in the structural sciences for data exchange and archiving, and are having a significant influence on these activities in other fields. . Statement of intent . The IUCr's interest in the STAR File is as a general data interchange standard for science, and its interest in the CIF, a conformant derivative of the STAR File, is as a concise data exchange and archival standard for crystallography and structural science. . Protection of the standards . To protect the STAR File and the CIF as standards for interchanging and archiving electronic data, the IUCr, on behalf of the scientific community, . * holds the copyrights on the standards themselves, . * owns the associated trademarks and service marks, and . * holds a patent on the STAR File. . These intellectual property rights relate solely to the interchange formats, not to the data contained therein, nor to the software used in the generation, access or manipulation of the data. . Promotion of the standards . The sole requirement that the IUCr, in its protective role, imposes on software purporting to process STAR File or CIF data is that the following conditions be met prior to sale or distribution. . * Software claiming to read files written to either the STAR File or the CIF standard must be able to extract the pertinent data from a file conformant to the STAR File syntax, or the CIF syntax, respectively. . * Software claiming to write files in either the STAR File, or the CIF, standard must produce files that are conformant to the STAR File syntax, or the CIF syntax, respectively. . * Software claiming to read definitions from a specific data dictionary approved by the IUCr must be able to extract any pertinent definition which is conformant to the dictionary definition language (DDL)[3] associated with that dictionary. . The IUCr, through its Committee on CIF Standards, will assist any developer to verify that software meets these conformance conditions. . Glossary of terms . [1] CIF: . is a data file conformant to the file syntax defined at http://www.iucr.org/iucr-top/cif/spec/index.html . [2] STAR File: . is a data file conformant to the file syntax defined at http://www.iucr.org/iucr-top/cif/spec/star/index.html . [3] DDL: . is a language used in a data dictionary to define data items in terms of "attributes". Dictionaries currently approved by the IUCr, and the DDL versions used to construct these dictionaries, are listed at http://www.iucr.org/iucr-top/cif/spec/ddl/index.html . Last modified: 30 September 2000 . IUCr Policy Copyright (C) 2000 International Union of Crystallography . ---------------------------------------------------------------------- . CBFlib V0.1 Notice . The following Diclaimer Notice applies to CBFlib V0.1, from which this version is derived. * The items furnished herewith were developed under the sponsorship of the U.S. Government. Neither the U.S., nor the U.S. D.O.E., nor the Leland Stanford Junior University, nor their employees, makes any warranty, express or implied, or assumes any liability or responsibility for accuracy, completeness or usefulness of any information, apparatus, product or process disclosed, or represents that its use will not infringe privately-owned rights. Mention of any product, its manufacturer, or suppliers shall not, nor is it intended to, imply approval, disapproval, or fitness for any particular use. The U.S. and the University at all times retain the right to use and disseminate the furnished items for any purpose whatsoever. * Notice 91 02 01 . ---------------------------------------------------------------------- . CIFPARSE notice . Portions of this software are loosely based on the CIFPARSE software package from the NDB at Rutgers university (see http://ndbserver.rutgers.edu/NDB/mmcif/software). CIFPARSE is part of the NDBQUERY application, a program component of the Nucleic Acid Database Project [ H. M. Berman, W. K. Olson, D. L. Beveridge, J. K. Westbrook, A. Gelbin, T. Demeny, S. H. Shieh, A. R. Srinivasan, and B. Schneider. (1992). The Nucleic Acid Database: A Comprehensive Relational Database of Three-Dimensional Structures of Nucleic Acids. Biophys J., 63, 751-759.], whose cooperation is gratefully acknowledged, especially in the form of design concepts created by J. Westbrook. . Please be aware of the following notice in the CIFPARSE API: * This software is provided WITHOUT WARRANTY OF MERCHANTABILITY OR FITNESS FOR A PARTICULAR PURPOSE OR ANY OTHER WARRANTY, EXPRESS OR IMPLIED. RUTGERS MAKE NO REPRESENTATION OR WARRANTY THAT THE SOFTWARE WILL NOT INFRINGE ANY PATENT, COPYRIGHT OR OTHER PROPRIETARY RIGHT. . ---------------------------------------------------------------------- . MPACK notice . Portions of this library are adapted from the "mpack/munpack version 1.5" routines, written by John G. Myers. Mpack and munpack are utilities for encoding and decoding (respectively) binary files in MIME (Multipurpose Internet Mail Extensions) format mail messages. The mpack software used is (C) Copyright 1993,1994 by Carnegie Mellon University, All Rights Reserved, and is subject to the following notice: * Permission to use, copy, modify, distribute, and sell this software and its documentation for any purpose is hereby granted without fee, provided that the above copyright notice appear in all copies and that both that copyright notice and this permission notice appear in supporting documentation, and that the name of Carnegie Mellon University not be used in advertising or publicity pertaining to distribution of the software without specific, written prior permission. Carnegie Mellon University makes no representations about the suitability of this software for any purpose. It is provided "as is" without express or implied warranty. * CARNEGIE MELLON UNIVERSITY DISCLAIMS ALL WARRANTIES WITH REGARD TO THIS SOFTWARE, INCLUDING ALL IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS, IN NO EVENT SHALL CARNEGIE MELLON UNIVERSITY BE LIABLE FOR ANY SPECIAL, INDIRECT OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE. . ---------------------------------------------------------------------- . CCP4 Packed Compression Notice . The CBF_PACKED and CBF_PACKED_V2 compression and decompression code incorporated in CBFlib is derived in large part from the J. P. Abrahams pack_c.c compression code in CCP4. This code is incorporated in CBFlib under the GPL and the LGPL with both the permission Jan Pieter Abrahams, the original author of pack_c.c (email from Jan Pieter Abrahams of 15 January 2007) and of the CCP4 project (email from Martyn Winn on 12 January 2007). The cooperation of J. P. Abrahams and of the CCP4 project is gratefully acknowledged. . ---------------------------------------------------------------------- Files: src/md5c.c include/md5.h Copyright: 1991, 1992 RSA Data Security, Inc. License: MD5 MD5 Notice . The following notice applies to the message digest software in md5.h and md5.c which are optionally used by this library. To that extent, this library is a work "derived from the RSA Data Security, Inc. MD5 Message-Digest Algorithm". . The software in md5.h and md5.c is Copyright (C) 1991-2, RSA Data Security, Inc. Created 1991. All rights reserved, and is subject to the following notice: * License to copy and use this software is granted provided that it is identified as the "RSA Data Security, Inc. MD5 Message-Digest Algorithm" in all material mentioning or referencing this software or this function. * License is also granted to make and use derivative works provided that such works are identified as "derived from the RSA Data Security, Inc. MD5 Message-Digest Algorithm" in all material mentioning or referencing the derived work. * RSA Data Security, Inc. makes no representations concerning either the merchantability of this software or the suitability of this software for any particular purpose. It is provided "as is" without express or implied warranty of any kind. * These notices must be retained in any copies of any part of this documentation and/or software. Files: debian/* Copyright: 2008, 2010, 2013, 2018, 2020 Teemu Ikonen , Morten Kjeldgaard Picca Frédéric-Emmanuel License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-licenses/GPL-2'.