gmap (2021-12-17+ds-3) unstable; urgency=medium * d/rules: fix logical error causing ftbfs on non-x86 architectures; this also fixes an unintended baseline violation on i386. -- Étienne Mollier Mon, 03 Oct 2022 19:36:31 +0200 gmap (2021-12-17+ds-2) unstable; urgency=medium [ Nilesh Patra ] * [skip ci] Remove myself from uploaders [ Étienne Mollier ] * d/rules: enforce a given simd level for build reproducibility. * d/control: add myself to uploaders. * d/rules: disable simd on non-amd64 and limit to sse2 on amd64. (Closes: #1020793) * d/gmap.lintian-overrides: update mismatched override. * d/control: declare compliance to standards version 4.6.1. -- Étienne Mollier Sun, 02 Oct 2022 18:00:07 +0200 gmap (2021-12-17+ds-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.6.0 (routine-update) -- Andreas Tille Sun, 16 Jan 2022 18:22:26 +0100 gmap (2021-08-25+ds-1) unstable; urgency=medium * New upstream version 2021-08-25+ds (Patches refreshed) -- Nilesh Patra Sat, 28 Aug 2021 20:13:44 +0530 gmap (2021-07-23+ds-1) unstable; urgency=medium * New upstream version 2021-07-23+ds * Remove merged patches d/p/{only-do-cpuid-on-amd64-i386.patch,cross} * Refresh d/p/{remove_getopt_code_copy.patch,install-data-local} -- Nilesh Patra Sun, 15 Aug 2021 18:23:39 +0530 gmap (2021-02-22+ds-1) unstable; urgency=high * Team upload. * New upstream release: "Fixed a fatal bug in GSNAP involving reads aligning to the beginning of the genome" * debian/rules: fix from Adrian Bunk to fix the i386 build * Drop build-dep on dh-exec, not used any more * Forwarded patches upstream * Build on riscv64 as well -- Michael R. Crusoe Fri, 26 Feb 2021 08:15:33 +0100 gmap (2021-02-12+ds-1) unstable; urgency=medium * Team upload. * Apply patch from Helmut Grohne for slightly better cross building support. Closes: #980484 * New upstream release. -- Michael R. Crusoe Fri, 19 Feb 2021 16:32:15 +0100 gmap (2020-12-17+ds-2) unstable; urgency=medium * Team upload. * Build on more architectures: arm64 armel armhf mips64el mipsel ppc64el -- Michael R. Crusoe Sun, 17 Jan 2021 17:18:31 +0100 gmap (2020-12-17+ds-1) unstable; urgency=medium * New upstream version -- Nilesh Patra Sat, 19 Dec 2020 18:14:27 +0530 gmap (2020-11-20+ds-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) -- Nilesh Patra Tue, 24 Nov 2020 21:55:43 +0530 gmap (2020-11-14+ds-1) unstable; urgency=medium * Team upload. * New upstream version * Drop fix-gcc10-build.patch -- Nilesh Patra Fri, 20 Nov 2020 15:50:10 +0530 gmap (2020-10-27+ds-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Fri, 30 Oct 2020 18:19:41 +0530 gmap (2020-10-14+ds-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Wed, 21 Oct 2020 11:17:19 +0530 gmap (2020-10-12+ds-1) unstable; urgency=medium * Team upload. * New upstream version -- Nilesh Patra Wed, 14 Oct 2020 16:08:58 +0530 gmap (2020-09-12+ds-1) unstable; urgency=medium * d/copyright, refresh Files-Exlcuded section * New upstream version 2020-09-12+ds -- Alexandre Mestiashvili Fri, 18 Sep 2020 12:55:31 +0200 gmap (2020-06-30+ds-2) unstable; urgency=medium * Team Upload. * Refresh patch * Fix gcc-10 FTBFS (Closes: #966863) -- Nilesh Patra Sat, 29 Aug 2020 21:03:54 +0530 gmap (2020-06-30+ds-1) unstable; urgency=medium * Build reproducibly Closes: #964960 * New upstream version * debhelper-compat 13 (routine-update) -- Andreas Tille Mon, 13 Jul 2020 21:12:43 +0200 gmap (2020-04-08+ds1-2) unstable; urgency=medium * Update d/rules, make build reproducible, thanks to Chris Lamb Closes: #956549 -- Alexandre Mestiashvili Sat, 18 Apr 2020 20:38:39 +0200 gmap (2020-04-08+ds1-1) unstable; urgency=medium * Do not override missing manpages * Fix license * Do not ship AUTHORS as doc * Drop getopt from upstream source -- Andreas Tille Sat, 11 Apr 2020 18:29:21 +0200 gmap (2020-04-08+ds-1) unstable; urgency=medium * New upstream version * Upstream has released gmap under free license * Rework d/copyright * d/watch: dversionmangle -- Andreas Tille Sat, 11 Apr 2020 08:08:20 +0200 gmap (2020-03-12+ds-1) unstable; urgency=medium * Team upload. * New upstream version * Standards-Version: 4.5.0 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) -- Steffen Moeller Tue, 31 Mar 2020 22:33:11 +0200 gmap (2019-09-12+ds-1) unstable; urgency=medium * Team upload. * New upstream version * debhelper-compat 12 * Standards-Version: 4.4.1 * Set upstream metadata fields: Bug-Submit (from ./configure). * Remove obsolete fields Name from debian/upstream/metadata. * Rely on pre-initialized dpkg-architecture variables. * Remove automake/-conf created files from source tree, adapt patch -- Steffen Moeller Mon, 30 Dec 2019 02:05:39 +0100 gmap (2019-05-12-1) unstable; urgency=low * Team upload. * New upstream version. -- Steffen Moeller Thu, 06 Jun 2019 11:53:34 +0200 gmap (2019-01-24-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * debhelper 12 * Standards-Version: 4.3.0 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target [ Alexandre Mestiashvili ] * Drop bigendian.patch, as gmap is build for amd64 only * Set Architecture to amd64 in d/control * Remove overrides for gmapl* and gsnapl* -- Alexandre Mestiashvili Thu, 31 Jan 2019 19:39:59 +0100 gmap (2018-07-04-5) unstable; urgency=medium * Limit architectures to amd64 * Use wildcard for lintian overrides for gmap/gsnap tools * Upload to unstable -- Alexandre Mestiashvili Sun, 06 Jan 2019 14:36:33 +0100 gmap (2018-09-27-2) experimental; urgency=medium * Add patch supposedly fixing builds on MIPS and ARM architectures -- Alexandre Mestiashvili Thu, 04 Oct 2018 14:43:27 +0000 gmap (2018-09-27-1) experimental; urgency=medium * New upstream version 2018-09-27 * Set Architecture to any, we want to test if it builds on other archs * Drop sse2.patch, applied by upstream, refresh install-data-local patch -- Alexandre Mestiashvili Fri, 28 Sep 2018 09:58:12 +0000 gmap (2018-07-04-4) unstable; urgency=medium [ Alexandre Mestiashvili ] * Update d/rules, remove EXTRA_CONFIGURE_ARGS, not needed for recent versions * Limit architectures to any-amd64 and any-i386 Closes: #908386 -- Alexandre Mestiashvili Wed, 19 Sep 2018 09:05:16 +0000 gmap (2018-07-04-3) unstable; urgency=medium * Bump Standards-Version to 4.2.1 * Fix a typo in sse2 patch description * d/control: XS-Autobuild: yes -- Alexandre Mestiashvili Fri, 31 Aug 2018 09:40:16 +0000 gmap (2018-07-04-2) unstable; urgency=medium * Add patch from upstream fixing FTBFS when a CPU has only SSE2 -- Alexandre Mestiashvili Thu, 30 Aug 2018 08:51:09 +0000 gmap (2018-07-04-1) unstable; urgency=medium [ Steffen Möller ] * Updated bio.tools RRID in d/u/metadata * Update metadata [ Andreas Tille ] * Cleanup d/rules * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 [ Alexandre Mestiashvili ] * Refresh patches * d/control: - update Uploader's email - drop libgmap1{,-dev} as there is no use cases so far Closes: #903793 * Update d/rules: - remove --enable-shared as we dropped libgmap1 - add stanza to install tests files to examples * Remove install files for libgmap1* * Update d/copyright, remove section for src/saca-k*, update email * Update lintian-overrides, remove *.nosimd binaries * Update d/filter.pl to fix gmap man page * Add autopkgtest -- Alexandre Mestiashvili Tue, 17 Jul 2018 17:07:39 +0200 gmap (2017-11-15-1) unstable; urgency=medium * New upstream version 2017-11-15 * Bump Standards-Version to 4.1.2 -- Alexandre Mestiashvili Thu, 21 Dec 2017 14:51:34 +0100 gmap (2017-10-30-1) unstable; urgency=medium * New upstream version 2017-10-30 * Simplify d/rules * Update symbols file -- Alexandre Mestiashvili Thu, 02 Nov 2017 13:35:50 +0100 gmap (2017-10-12-1) unstable; urgency=medium [ Andreas Tille ] * Fix OMICS entry [ Alexandre Mestiashvili ] * Update d/watch to use @ANY_VERSION@ and @ARCHIVE_EXT@ * New upstream version 2017-10-12 * Update d/libgma1.symbols -- Alexandre Mestiashvili Sat, 21 Oct 2017 00:05:57 +0200 gmap (2017-09-30-1) unstable; urgency=medium * New upstream version 2017-09-30 * Update d/libgmap1.symbols * Bump Standards-Version to 4.1.1 -- Alexandre Mestiashvili Mon, 02 Oct 2017 11:23:59 +0200 gmap (2017-09-11-1) unstable; urgency=medium * New upstream version 2017-09-11 * Update d/libgmap1.symbols -- Alexandre Mestiashvili Fri, 15 Sep 2017 09:45:13 +0200 gmap (2017-09-05-1) unstable; urgency=medium * New upstream version 2017-09-05 * Refresh install-data-local patch * Update symbols file -- Alexandre Mestiashvili Mon, 11 Sep 2017 13:50:59 +0200 gmap (2017-08-15-1) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: Added refs to registries [ Alexandre Mestiashvili ] * New upstream version 2017-08-15 * Update d/control: introduce 2 new packages - libgmap1-{,dev}, * Update d/rules, use variables provided by /usr/share/dpkg/default.mk * Add install files for libgmap1{,-dev} and gmap * Add symbols file d/libgmap1.symbols * Update d/gmap.lintian-overrides, gmap builds more binaries without man page [ Andreas Tille ] * debhelper 10 * Standards-Version: 4.1.0 -- Alexandre Mestiashvili Mon, 04 Sep 2017 11:51:55 +0200 gmap (2016-11-07-1) unstable; urgency=medium * New upstream version 2016-11-07 * Refresh only-do-cpuid-on-amd64-i386.patch -- Alexandre Mestiashvili Wed, 09 Nov 2016 16:15:45 +0100 gmap (2016-09-23-1) unstable; urgency=medium * New upstream version 2016-09-23 -- Alexandre Mestiashvili Sun, 25 Sep 2016 14:09:57 +0200 gmap (2016-09-14-1) unstable; urgency=medium * New upstream version 2016-09-14 -- Alexandre Mestiashvili Mon, 19 Sep 2016 16:07:15 +0200 gmap (2016-08-24-1) unstable; urgency=medium * New upstream version 2016-08-24 * Refresh install-data-local patch -- Alexandre Mestiashvili Sun, 28 Aug 2016 09:14:51 +0200 gmap (2016-08-16-1) unstable; urgency=medium * Imported Upstream version 2016-08-16 -- Alexandre Mestiashvili Wed, 17 Aug 2016 15:51:44 +0200 gmap (2016-08-08-1) unstable; urgency=medium * Imported Upstream version 2016-08-08 -- Alexandre Mestiashvili Tue, 09 Aug 2016 10:48:56 +0200 gmap (2016-07-11.v4-1) unstable; urgency=medium * Imported Upstream version 2016-07-11.v4 -- Alexandre Mestiashvili Mon, 08 Aug 2016 10:41:50 +0200 gmap (2016-07-11.v2-2) unstable; urgency=medium * Add patch from Graham Inggs fixing FTBFS on armhf and amd64 (Closes: #832418) -- Alexandre Mestiashvili Mon, 25 Jul 2016 13:10:24 +0200 gmap (2016-07-11.v2-1) unstable; urgency=medium * Imported Upstream version 2016-07-11.v2 * Update copyright format string -- Alexandre Mestiashvili Fri, 22 Jul 2016 10:09:47 +0200 gmap (2016-06-09-1) unstable; urgency=medium * Add links to binaries for specific CPU instruction sets (ssse4.1 and nosimd) * Override lintian warnings for missing man pages * Imported Upstream version 2016-06-03 2016-06-09 * Don't run dh_auto_test in parallel, Closes: #826304 -- Alexandre Mestiashvili Wed, 08 Jun 2016 16:36:13 +0200 gmap (2016-05-25-1) unstable; urgency=medium * Repack and compress the source with xz * Imported Upstream version 2016-05-25 * Update d/copyright -- Alexandre Mestiashvili Thu, 26 May 2016 11:05:59 +0200 gmap (2016-05-01-1) unstable; urgency=medium * Imported Upstream version 2016-04-04 * Update copyright years * Imported Upstream version 2016-05-01 * Bump Standards-Version -- Alexandre Mestiashvili Wed, 27 Apr 2016 13:48:08 +0200 gmap (2015-12-31.v9-1) unstable; urgency=medium * Imported Upstream version 2015-12-31.v9 * Export all hardening flags, remove DH_VERBOSE and DH_OPTIONS -- Alexandre Mestiashvili Fri, 18 Mar 2016 10:12:35 +0100 gmap (2015-12-31.v8-1) unstable; urgency=medium * Imported Upstream version 2015-12-31.v8 -- Alexandre Mestiashvili Fri, 26 Feb 2016 12:04:42 +0100 gmap (2015-12-31.v7-1) unstable; urgency=medium * d/{control,copyright}: cme fix dpkg * Imported Upstream version 2015-12-31.v7 -- Alexandre Mestiashvili Fri, 05 Feb 2016 10:35:32 +0100 gmap (2015-12-31.v6-1) unstable; urgency=medium * d/README.Debian: update * Imported Upstream version 2015-12-31.v6 -- Alexandre Mestiashvili Fri, 29 Jan 2016 16:17:13 +0100 gmap (2015-12-31.v5-1) unstable; urgency=medium * Imported Upstream version 2015-12-31.v5 -- Alexandre Mestiashvili Tue, 19 Jan 2016 13:15:06 +0100 gmap (2015-12-31.v4-1) unstable; urgency=medium * d/README.Debian: fix typo * Imported Upstream version 2015-12-31.v4 -- Alexandre Mestiashvili Fri, 15 Jan 2016 09:43:30 +0100 gmap (2015-11-20-1) unstable; urgency=medium * Imported Upstream version 2015-11-20 -- Alexandre Mestiashvili Thu, 26 Nov 2015 11:51:49 +0100 gmap (2015-09-29-2) unstable; urgency=medium * Build with zlib and bzlib support ( adds --gunzip --bunzip2 options ) -- Alexandre Mestiashvili Thu, 15 Oct 2015 14:39:07 +0200 gmap (2015-09-29-1) unstable; urgency=medium * Imported Upstream version 2015-09-29 -- Alexandre Mestiashvili Wed, 14 Oct 2015 09:32:28 +0200 gmap (2015-07-23-1) unstable; urgency=medium * Imported Upstream version 2014-12-29 * d/copyright: update year for debian/* * d/filter.pl: use force of regexs to brush up the output of help2man automagically * d/rules: add override for automatic generation of man pages * Imported Upstream version 2015-06-10 * d/patches: refresh * d/control: add help2man Build-dep * d/*.1: removed man pages * d/manpages: removed * Imported Upstream version 2015-07-23 * upload to unstable -- Alexandre Mestiashvili Fri, 21 Aug 2015 20:24:29 +0200 gmap (2014-12-24-2) experimental; urgency=medium * add --disable-simd when compiled for i386 * d/patches: drop patch disabling tests for i386 -- Alexandre Mestiashvili Thu, 19 Mar 2015 18:37:54 +0100 gmap (2014-12-24-1) experimental; urgency=medium * Imported Upstream version 2014-12-24 -- Alexandre Mestiashvili Fri, 13 Mar 2015 10:56:23 +0100 gmap (2014-12-23-1) UNRELEASED; urgency=medium * Imported Upstream version 2014-12-23 * d/*.1: updated man pages * d/rules: applied patch from Graham Inggs , Closes: #779564. -- Alexandre Mestiashvili Thu, 12 Mar 2015 17:01:57 +0100 gmap (2014-11-25-1) UNRELEASED; urgency=medium * Imported Upstream version 2014-11-25 * d/copyright: add missing information for config/* directory -- Alexandre Mestiashvili Wed, 26 Nov 2014 10:22:52 +0100 gmap (2014-10-22-1) unstable; urgency=medium [ Alexandre Mestiashvili ] * build fails due to 2 failing test on i386 for 2014-10-14 [ Andreas Tille ] * Imported Upstream version 2014-10-22 [ Alexandre Mestiashvili ] * debian/*.1: updated dates in man pages * d/patches/drop_tests_i386.patch: do not run tests on i386 because they fail. As it is not clear if the program is useful on i386 architecure, let's leave it like that for now. * d/README.Debian: note that embeded tests are skipped for i386 -- Andreas Tille Sun, 26 Oct 2014 08:20:42 +0100 gmap (2014-10-09-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * DEP5 fix -- Andreas Tille Sat, 11 Oct 2014 08:17:29 +0200 gmap (2014-07-28-1) unstable; urgency=medium * Imported Upstream version 2014-07-28 -- Alexandre Mestiashvili Wed, 30 Jul 2014 09:55:12 +0200 gmap (2014-07-04-1) unstable; urgency=medium * New upstream release -- Alexandre Mestiashvili Fri, 04 Jul 2014 10:49:40 +0200 gmap (2014-06-10-1) UNRELEASED; urgency=medium * New upstream release * debian/patches/install-data-local: refreshed * d/control: use canonical Vcs fields - updated Standards-Version - added help2man to Build-Depends: - remove trailing slash from Homepage - added myself to Uploaders: * d/rules: install symlinks for gmap,gsnap and gmap_build in /usr/bin - use as bindir /usr/lib/gmap * d/install: removed as all files are installed in /usr/lib/gmap * d/copyright: - refresh copyright, add not mentioned before files - add Comment that code was influenced by another software * debian/*.1: updated man pages * d/docs: install NOTICE -- Alexandre Mestiashvili Fri, 04 Jul 2014 09:59:32 +0200 gmap (2013-07-20-1) unstable; urgency=low * New upstream version * debian/control: - cme fix dpkg-control - debhelper 9 -- Andreas Tille Fri, 02 Aug 2013 15:09:36 +0200 gmap (2012-06-12-1) unstable; urgency=low * New upstream release -- Shaun Jackman Tue, 12 Jun 2012 15:06:22 -0700 gmap (2012-03-23-1) UNRELEASED; urgency=low * New upstream release * debian/control: - Added myself to Uploaders - Standards-Version: 3.9.3 (no changes needed) * debhelper 8 (control+compat) * debian/upstream: Add citation information * debian/copyright: Fixed some DEP5 issues and verified using cme fix dpkg-copyright * debian/install: gsnap_tally is not builded any more in this version * debian/rules: really use autotools-dev to enable building twice in a row -- Andreas Tille Sun, 01 Apr 2012 09:53:26 +0200 gmap (2011-12-28-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Thu, 29 Dec 2011 12:32:19 -0800 gmap (2011-11-30-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Wed, 07 Dec 2011 10:46:12 -0800 gmap (2011-10-16-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Wed, 19 Oct 2011 15:40:36 -0700 gmap (2011-09-14-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Thu, 15 Sep 2011 14:36:34 -0700 gmap (2011-09-09-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Wed, 14 Sep 2011 17:09:21 -0700 gmap (2011-08-15-1) unstable; urgency=low * New upstream release. * Bump Standards-Version to 3.9.2. -- Shaun Jackman Tue, 23 Aug 2011 10:45:46 -0700 gmap (2011-03-11-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Wed, 23 Mar 2011 10:16:38 -0700 gmap (2010-07-27-1) unstable; urgency=low * New upstream release. * Bump Standards-Version to 3.9.1. -- Shaun Jackman Fri, 06 Aug 2010 10:12:23 -0700 gmap (2010-07-21-1) unstable; urgency=low * New upstream release. -- Shaun Jackman Thu, 22 Jul 2010 11:36:34 -0700 gmap (2010-07-20-1) unstable; urgency=low * New upstream release. * Bump Standards-Version to 3.9.0. -- Shaun Jackman Wed, 21 Jul 2010 11:07:28 -0700 gmap (2010-03-09-1) unstable; urgency=low * Initial release. Closes: #580277. -- Shaun Jackman Wed, 28 Apr 2010 11:55:31 -0700