infernal (1.1.5-3) unstable; urgency=medium
* Fix clean target
Closes: #1045517
* Standards-Version: 4.7.0 (routine-update)
* Drop ${shlibs:Depends} from doc package
-- Andreas Tille <tille@debian.org> Tue, 17 Dec 2024 18:38:04 +0100
infernal (1.1.5-2) unstable; urgency=medium
* Team upload.
* d/bin/cmalign: adjust SSE2 check to only run on i386 systems, allowing
the /usr/lib/infernal/cm* apps to run on arm64 systems.
-- Michael R. Crusoe <crusoe@debian.org> Sat, 16 Sep 2023 15:58:22 +0200
infernal (1.1.5-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* Set field Upstream-Name in debian/copyright.
* Fix typo in debian/rules rules: override_dh_compress ⇒ override_dh_compress
* Remove obsolete field Name from debian/upstream/metadata (already present in
machine-readable debian/copyright).
* d/control: build for arm64
* d/upstream/metadata: link to their GitHub repo
* d/rules: only pass -msse2 on i386
* d/patches: forward upstream
-- Michael R. Crusoe <crusoe@debian.org> Thu, 14 Sep 2023 22:03:23 +0200
infernal (1.1.4-1) unstable; urgency=medium
* Enable Architecture: all builds on arm4
Closes: #976550
* New upstream version
* Standards-Version: 4.5.1 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
* Rules-Requires-Root: no (routine-update)
* No tab in license text (routine-update)
-- Andreas Tille <tille@debian.org> Fri, 11 Dec 2020 18:49:26 +0100
infernal (1.1.3-5) unstable; urgency=medium
* Make build reproducible
Closes: #953117
* Standards-Version: 4.5.0 (routine-update)
* Add salsa-ci file (routine-update)
-- Andreas Tille <tille@debian.org> Wed, 04 Mar 2020 19:51:06 +0100
infernal (1.1.3-4) unstable; urgency=medium
* Team upload.
* fix i386 build by always setting -msse2
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sat, 07 Dec 2019 11:22:55 +0100
infernal (1.1.3-3) unstable; urgency=medium
[ Chris Lamb ]
* Make the build reproducible
Closes: #946315
* Enable "nocheck" build profile
Closes: #946314
[ Andreas Tille ]
* Remove patches autoreconf.patch, format_security.patch that are
missing from debian/patches/series.
* debian/copyright: use spaces rather than tabs to start continuation
lines.
* Set upstream metadata fields: Name (from ./configure).
-- Andreas Tille <tille@debian.org> Sat, 07 Dec 2019 08:56:34 +0100
infernal (1.1.3-2) unstable; urgency=medium
* Team upload.
* Add python3 build-dep for `make check`
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
* Trim trailing whitespace.
* Set upstream metadata fields: Bug-Submit.
* Enable a verbose build log
* infernal-doc: mark Multi-Arch: foreign (thanks Multiarch hinter!)
* debian/patches/hardening: added CPPFLAGS to easel, rmark, and hmmer/profmark
* Install example binaries into /usr/lib/ and symlink them into the
doc/infernal/examples directory (fixes a FHS violation)
* Added missing autopkgtest dependency on python3
-- Michael R. Crusoe <michael.crusoe@gmail.com> Sun, 01 Dec 2019 16:35:34 +0100
infernal (1.1.3-1) unstable; urgency=medium
* New upstream version
- Upstream accepted patch for reproducible builds
- autoreconf now works without respective non-applicable patch
* Still debian/TODO: remove code copy of hmmer
* debhelper-compat 12
* Standards-Version: 4.4.1
-- Steffen Moeller <moeller@debian.org> Sat, 30 Nov 2019 00:03:03 +0100
infernal (1.1.2-2) unstable; urgency=medium
* Fix homepage
* Add debian/TODO: remove code copy of hmmer
* debhelper 10
* d/watch: version=4
* Added references to RRID and OMICtools registries (Steffen Moeller)
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.1.5
* Fix configure.ac to enable autoreconf
* Fix spelling
-- Andreas Tille <tille@debian.org> Mon, 16 Jul 2018 12:20:32 +0200
infernal (1.1.2-1) unstable; urgency=medium
* Team upload.
* New upstream release.
* Fix watchfile.
* Make build reproducible.
-- Sascha Steinbiss <satta@debian.org> Sat, 06 Aug 2016 00:00:56 +0000
infernal (1.1.1-5) unstable; urgency=medium
* Team upload.
[Canberk Koç]
* Added Autopkgtest suite
* debian/rules file changed
* debian/tests directory added
[ Andreas Tille ]
* Move packaging from SVN to Git
* cme fix dpkg-control
* Better hardening
-- Canberk Koç <canberkkoc@gmail.com> Wed, 22 Jun 2016 05:35:41 +0300
infernal (1.1.1-4) unstable; urgency=medium
* Architecture: any-amd64 any-i386
Closes: #815310
* cme fix dpkg-control
* Secure Vcs-Browser
-- Andreas Tille <tille@debian.org> Sat, 20 Feb 2016 23:07:53 +0100
infernal (1.1.1-3) unstable; urgency=medium
* cme fix dpkg-control
* drop dpg package at all since it is auto-generated by dpkg now
Closes: #766309
-- Andreas Tille <tille@debian.org> Mon, 21 Dec 2015 09:35:57 +0100
infernal (1.1.1-2) unstable; urgency=medium
* Re-enable i386 by checking availability of sse2
* d/copyright: Deleted unneeded paragraphs
* d/rules: drop redundant targets
* d/README*: drop pararaphs about squid which is not part of the
source any more
-- Andreas Tille <tille@debian.org> Thu, 18 Sep 2014 10:00:12 +0200
infernal (1.1.1-1) unstable; urgency=medium
* Team upload.
* New upstream release.
-- Charles Plessy <plessy@debian.org> Fri, 08 Aug 2014 21:45:26 +0900
infernal (1.1-1) unstable; urgency=low
* Team upload.
* New upstream release.
* Removed i386 architecture as some processors do not provide SSE2.
* Conforms with Policy 3.9.5.
-- Charles Plessy <plessy@debian.org> Sun, 01 Dec 2013 10:30:00 +0900
infernal (1.1~rc4-2) unstable; urgency=low
* Team upload.
* Build-depends on libperl4-corelibs-perl (Closes: #724119).
* debian/control: removed myself from Uploaders.
-- Charles Plessy <plessy@debian.org> Mon, 23 Sep 2013 10:57:17 +0900
infernal (1.1~rc4-1) unstable; urgency=low
* New upstream source
* debian/source/format: 3.0 (quilt)
* debian/control:
- cme fix dpkg-control
- debhelper 9
- do not Build-Depend: quilt since source format implies this
- The package builds only on architectures with SSE instructions.
Quoting from build log on armel:
configure: WARNING: Infernal 1.1 requires VMX or SSE capability for
parallel instructions.
configure: error: It appears your platform has neither and will not
support Infernal.
So all non i386/amd64 architectures were excluded
Closes: #718742
- use anonscm in Vcs fields
* debian/rules:
- remove redundant setting for flags which is handled by debhelper 9
automatically
- use xz compression
* debian/copyright: DEP5
-- Andreas Tille <tille@debian.org> Mon, 05 Aug 2013 12:06:12 +0200
infernal (1.1~rc2-1) unstable; urgency=low
* New upstream version - aiming to support RNAWorld BOINC project,
with many thanks and regards to Yoyo!
- cmscore no longer available
* Bumped policy to 3.9.4 (no changes needed)
- introduced hardening, with it build dep on
dpkg-dev (>= 1.16.1~)
-- Steffen Moeller <moeller@debian.org> Wed, 01 May 2013 20:24:17 +0200
infernal (1.0.2-3) UNRELEASED; urgency=low
[ Steffen Moeller ]
* Extra fixed for lintian cleanliness (Steffen)
[ Andreas Tille ]
* debian/upstream:
- do not specify DOI twice
- Moved PMID to references
* debian/control:
- Fixed Vcs-Svn field
- Standards-Version: 3.9.3 (no changes needed)
-- Andreas Tille <tille@debian.org> Thu, 08 Mar 2012 11:44:54 +0100
infernal (1.0.2-2) unstable; urgency=low
* Series of mall fixes (Closes: #643407).
* source/format 3.0
* Policy to 3.9.2
* added infernal-dbg
* corrected upstream's email address
-- Steffen Moeller <moeller@debian.org> Tue, 27 Sep 2011 15:48:27 +0200
infernal (1.0.2-1) unstable; urgency=low
* New upstream version
-- Andreas Tille <tille@debian.org> Tue, 03 Nov 2009 11:15:34 +0100
infernal (1.0-2) unstable; urgency=low
* Switch to CDBS to benefit from automagical config.{sub,guess}
update (debian/rules). Closes: #550253.
* debian/control:
- Depend on cdbs, downgraded requirement on debhelper from 7.1 to 7.
- Transferred bibliographic information from the package description
to debian/upstream-metadata.yaml.
- Clarified the short description of the documentation package.
* Removed debian/infernal.dirs, not needed.
* Edited README.source, removing mention that infernal is in contrib.
* debian/copyright points at the version 3 of the GPL.
-- Charles Plessy <plessy@debian.org> Sat, 10 Oct 2009 11:22:35 +0900
infernal (1.0-1) unstable; urgency=low
[ Charles Plessy ]
* Updated my email address.
[ Andreas Tille ]
* New upstream version
* debian/control:
- Standards-Version: 3.8.3 (no changes needed)
- Added myself to uploaders
- s/Debian-Med/Debian Med/
- Build-Depends: debhelper (>= 7.1) autotools-dev
- Package: infernal-doc
* debian/rules rewritten to make use of short dh
* debian/copyright:
- added myself to Copyright holders of debian/*
- squid is not part of the upstream tarball anymore so this
paragraph was deleted
- files/Userguide.pdf: Copied comment about PDF = source from
README.Debian
* debian/infernal-doc.doc-base
* debian/infernal.install: install src/{trcyk,truncyk_check} to
/usr/bin
* TODO: Convince upstream to release libeazel which is also used in
hmmer as a separate library instead of copying the code into
different projects
-- Andreas Tille <tille@debian.org> Fri, 25 Sep 2009 15:17:22 +0200
infernal (0.81-1) experimental; urgency=low
* Initial release (Closes: #441840)
-- Steffen Moeller <moeller@debian.org> Mon, 10 Sep 2007 23:15:37 +0200