Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: jalview Upstream-Contact: jalview-discuss@jalview.org Files-Excluded: jalview/j11lib jalview/j8lib jalview/j11digestonly jalview/j8digestonly jalview/examples/biojson-doc jalview/examples/javascript jalview/examples/jmol jalview/examples/example_biojs.html jalview/examples/embeddedWJmol.html jalview/examples/index.html jalview/utils jalview/getdown Source: The tarball is made by deleting the jars in the j8* and j11* dirs, the utils directory as we will rely on the Debian-packaged tools, and some folders in the examples directory, of which copyright is a bit confusing. We also delete some files with very long lines in the examples/ folder. getdown is a tool to update the software at runtime, which we don't want to enable. Files: * Copyright: 2014-2020 The Jalview Authors License: GPL-3+ Files: src/com/github/reinert/jjschema/Attributes.java Copyright: 2014 Danilo Reinert License: Apache-2.0 or LGPL-3+ Files: src/com/stevesoft/* Copyright: 2001 Steven R. Brandt License: LGPL-3+ Files: src/ext/edu/* Copyright: 2006 The Regents of the University of California. License: special Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions, and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions, and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Redistributions must acknowledge that this software was originally developed by the UCSF Computer Graphics Laboratory under support by the NIH National Center for Research Resources, grant P41-RR01081. . THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Comment: This is similar to BSD-3-clause but the third clause has been changed for redistribution acknowledgement. Files: src/jalview/ext/android/* Copyright: 2006 The Android Open Source Project 2014-2020 The Jalview Authors License: Apache-2.0 and GPL-3+ Files: src/jalview/gui/AquaInternalFrameManager.java Copyright: 2011-2012 Oracle and/or its affiliates. License: GPL-2 Files: test/junit/* Copyright: 2004-2012 Sebastian Dietrich License: Apache-2.0 Files: debian/* Copyright: 2009-2011 Vincent Fourmond 2020-2021 Pierre Gruet License: GPL-3+ License: Apache-2.0 On Debian systems the full text of the Apache-2.0 license can be found in /usr/share/common-licenses/Apache-2.0. License: GPL-2 On Debian systems, the complete text of the GNU General Public License (version 2) can be found in `/usr/share/common-licenses/GPL-2'. License: GPL-3+ On Debian systems, the complete text of the GNU General Public License version 3 can be found in `/usr/share/common-licenses/GPL-3'. License: LGPL-3+ On Debian systems, the complete text of the GNU Lesser General Public License version 3 can be found in `/usr/share/common-licenses/LGPL-3'.