libsbml (5.20.2+dfsg-8) unstable; urgency=medium * Team upload. * Added patch from upstream to add libxml2 2.12.0 support. Closes: #1073321 -- Michael R. Crusoe Wed, 26 Jun 2024 18:59:21 +0200 libsbml (5.20.2+dfsg-7) unstable; urgency=medium * Team upload. * d/rules: correct test skipping logic for i386. -- Michael R. Crusoe Sat, 04 May 2024 07:55:25 +0200 libsbml (5.20.2+dfsg-6) unstable; urgency=medium * Team upload. * d/rules: skip tests on i386 due to "test_perl_binding" failing. -- Michael R. Crusoe Fri, 03 May 2024 16:23:53 +0200 libsbml (5.20.2+dfsg-5) unstable; urgency=medium * Team upload. * d/rules: Fix the "any" build. * Expand list of non-mono archs, simplify test for C# support. * d/rules: only run dh_octave_substvar for the libsbml5-octave package. * d/control: drop unused latex build-deps * d/rules: disable parallel building for now. -- Michael R. Crusoe Tue, 30 Apr 2024 12:28:07 +0200 libsbml (5.20.2+dfsg-4) unstable; urgency=medium * Team upload. * Hand write the autopkgtest to only test against the default version of Python. Closes: #1069876 * d/control: skip building mono packages for mips64el and riscv64, as mono-runtime is not available for those archs. * d/control: remove dep on swig by python3-sbml5. Closes: #1067961 * d/rules & d/cmake_opts: set Python include and binary paths dynamically. * d/rules: Stop setting JDK_PATH & JAVA_INCLUDE_PATH, they aren't used. * d/rules: unify references to the build directory; use dh_auto_configure and dh_auto_make. This also helps with build hardening and enables parallel building. * d/upstream/metadata: Update for their GitHub repository. * d/rules: build and run the tests. -- Michael R. Crusoe Mon, 29 Apr 2024 16:19:36 +0200 libsbml (5.20.2+dfsg-3) unstable; urgency=medium * Drop the Python3-Version attribute Closes: #1068105 * Fix doc-base file -- Andreas Tille Sat, 30 Mar 2024 21:36:28 +0100 libsbml (5.20.2+dfsg-2.1) unstable; urgency=medium * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062619 -- Benjamin Drung Wed, 28 Feb 2024 17:32:20 +0000 libsbml (5.20.2+dfsg-2) unstable; urgency=medium * Team upload. * d/control: X-Python3-Version: 3.11 (==) While this change is not ideal, because of the upcoming necessary upload to bring python3.12 support when it becomes the default, it is a short term fix to move the python3.12 migration forward. (Closes: #1059650) -- Étienne Mollier Sun, 31 Dec 2023 15:03:26 +0100 libsbml (5.20.2+dfsg-1) unstable; urgency=medium * New upstream version * add build support for loongarch64 Closes: #1058906 * Drop ancient X-Python-Version field (routine-update) * Update location of docs in dh_installdocs helpers * Use Debian packaged mathjax.js -- Andreas Tille Mon, 18 Dec 2023 14:31:08 +0100 libsbml (5.19.7+dfsg-2) unstable; urgency=medium * Team upload. * d/control: bump preferred python3 version to 3.11. (Closes: #1028993) * d/control: declare compliance to standards version 4.6.2. -- Étienne Mollier Mon, 16 Jan 2023 21:48:17 +0100 libsbml (5.19.7+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Upstream moved to Github * New upstream version * Install octave tests and cmake files * Remove Windows related file from upstream source * Just provide default Python3 version support since upstream does not support more than one Python3 version and adjust python3-sbml5.install * lintian-overrides (see lintian bug #1017966) * X-Python3-Version: 3.10 [ Pierre Gruet ] * Fixing a wrong import in AutoTestRunner.java * Fixing a missing import in the matlab bindings [ Étienne Mollier ] * d/t/autopkgtest-pkg-python.conf: invoke module as "libsbml". * d/control: enable testsuite autopkgtest-pkg-python. -- Andreas Tille Fri, 02 Dec 2022 10:53:13 +0100 libsbml (5.19.0+dfsg-3) unstable; urgency=medium * Team upload. * Setting javac source/target level to 7 to be able to build with OpenJDK 17 (Closes: #1011157) * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Archive, Repository. -- Pierre Gruet Sun, 29 May 2022 20:33:42 +0200 libsbml (5.19.0+dfsg-2) unstable; urgency=medium * Team upload. * Add python3.10.patch from Frank T. Bergmann to fix FTBFS with python3.10. Thanks to Adrian Bunk (Closes: #1008669) * Standards-Version: 4.6.0 (routine-update) -- Étienne Mollier Wed, 30 Mar 2022 22:25:04 +0200 libsbml (5.19.0+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Rules-Requires-Root: no (routine-update) * Update renamed lintian tag names in lintian overrides. * Install cmake and pkgconfig files * Enable dh_missing --fail-missing -- Andreas Tille Tue, 19 Jan 2021 19:34:01 +0100 libsbml (5.18.0+dfsg-2) unstable; urgency=medium * Do not attempt to build on several architectures Closes: #953584 * Add salsa-ci file (routine-update) -- Andreas Tille Wed, 11 Mar 2020 09:53:46 +0100 libsbml (5.18.0+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Remove obsolete fields Contact, Name from debian/upstream/metadata (already present in machine-readable debian/copyright). * Build-Depends: dh-python Closes: #949195 * Fix installation path of Python modules Closes: #922486 * Enforce Python3 interpreter in examples -- Andreas Tille Thu, 30 Jan 2020 19:10:49 +0100 libsbml (5.17.2+dfsg-3) unstable; urgency=medium * Fix link in development package Closes: #920849 -- Andreas Tille Wed, 30 Jan 2019 19:17:03 +0100 libsbml (5.17.2+dfsg-2) unstable; urgency=medium * Team upload. [ Andreas Tille ] * Add missing Breaks+Replaces: libsbml5-python-doc Closes: #919794 [ Michael R. Crusoe ] * Fix build for multiarch cross building (specifically i386 on amd64) * Link to jquery and other assets from the default-jdk-doc * Slim build-deps (637 → 595) use jdk-headless -- Michael R. Crusoe Sat, 19 Jan 2019 23:39:33 -0800 libsbml (5.17.2+dfsg-1) unstable; urgency=medium [ gregor herrmann ] * Fix Perl installdir Closes: #896531 [ Andreas Tille ] * New upstream version * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * debhelper 12 * Deal with issue in doclets by removing docs/src/SBMLDoclet.java * Remove libsbml-java-doc since doc does not build properly Closes: #901455, #911482 * Provide Python3 instead of Python2 bindings (SBML can only provide either Python2 or Python3 - lets do the switch now) Closes: #847013 * Secure URI in copyright format * Drop useless get-orig-source target * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Do not parse d/changelog * Build-Depends: libnewlib-dev, check * Remove Matlab related options from debian/cmake_opts (thanks for the hint to Nicolas Mora) * WITH_R=off (we do not build an R package and something is wrong with the R build) * Do not provide Java doc since there are errors when creating it and this solution was suggested by the Debian Java team * Fix Perl interpreter path * d/copyright: examples have MIT license -- Andreas Tille Thu, 17 Jan 2019 12:12:21 +0100 libsbml (5.16.0+dfsg-2) unstable; urgency=medium * Work around javadoc issue with Java 9 Closes: #893298 -- Andreas Tille Sun, 18 Mar 2018 19:49:01 +0100 libsbml (5.16.0+dfsg-1) unstable; urgency=medium * New upstream version * Build-depend on dh-octave instead of octave-pkg-dev (Thanks for the patch to Rafael Laboissière ) Closes: #890089 * Standards-Version: 4.1.3 * debhelper 11 * Adapt docbase files * Remove unused lintian override -- Andreas Tille Sun, 11 Feb 2018 22:54:57 +0100 libsbml (5.15.2+dfsg-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.0.0 (no changes needed) * Removed debian/libsbml5.triggers since now trigger is properly set by dh_makeshlibs/10.7.2 * Rebuild with gcc7 Closes: #871291 -- Andreas Tille Tue, 08 Aug 2017 04:50:29 +0200 libsbml (5.13.0+dfsg-1) unstable; urgency=medium * New upstream version Closes: #848021 [ Afif Elghraoui ] * Drop explicit dbg packagas * Register changelog with dh_installchangelogs [ Andreas Tille ] * d/watch: - xz compression for repackaged upstream source - version=4 * cme fix dpkg-control * hardening=+all * Use triggers instead of explicit ldconfig calls * debhelper 10 * Proper dealing with lintian-overrides -- Andreas Tille Thu, 15 Dec 2016 08:17:15 +0100 libsbml (5.12.0+dfsg-3) unstable; urgency=medium * Build-Depend from default-jdk instead a specific version Closes: #814166 -- Andreas Tille Tue, 09 Feb 2016 11:28:36 +0100 libsbml (5.12.0+dfsg-2) unstable; urgency=medium * follow Debian CLI library packaging guidelines (add missing dependencies) Closes: #808477 * add debian/libsbmlcsP.dll.config following a hint of Jo Shields in the log of bug #808477 -- Andreas Tille Sun, 20 Dec 2015 21:28:59 +0100 libsbml (5.12.0+dfsg-1) unstable; urgency=medium [ Ivo Maintz ] * New upstream version * debian/*doc-base: added doc-base integration for the *doc packages * debian/control.in: fixed some spelling errors * debian/libsbml5-octave.install: turned into a script to install into the right location * debian/rules: use octave itself do set OCTAVE_PATH debian/libsbml5-octave.links.* are obsolete install index.html to the proper location remove wastful *.md5 files * set executable rights on debian/libsbml5-octave.install to let it work also in svn-buildpackage [ Andreas Tille ] * According to https://lists.debian.org/debian-bsd/2014/09/msg00133.html libsbml requires openjdk - so we drop all alternatives from the dependency list * forward port patch to build on mipsel (thanks to Jurica Stanojkovic for the original patch) Closes: #788068 * forward port patch to build with SWIG 3.x (thanks to Logan Rosen for the original patch) Closes: #805584 * Rebuild successfully using gcc-5 Closes: #793256 * Do not Build-Depend from transitional package mono-gmcs but rather mono-mcs * move packaging from SVN to Git * cme fix dpkg-control * make fiddling around with debian/control due to matlab the exception -- Andreas Tille Fri, 18 Dec 2015 18:13:10 +0100 libsbml (5.10.0+dfsg-1) unstable; urgency=medium [Ivo Maintz] * debian/cmake_opts: enabled the qual extension * debian/rules: added "--download-current-version" in get-orig-source target added some more magic to the clean target for proper handling of xz archives removed the full delete/unpack part from clean, instead using rm and debian/source/options * debian/copyright: the path to prettify.js had changed added macosx to Files-Excluded * debian/watch: changed the name of the source from the bare "core" package to the full source pack, containing some more extensions. * debian/*links: updated some links to the version of libsbml * debian/patches/perl-installdirs.patch added and debian/libsbml5-perl.install (thanks to gregor herrmann for this solution) [ Andreas Tille ] * New upstream version * debian/upstream -> debian/upstream/metadata * debian/control: Drop explicite ruby version in Build-Dependencies * debian/copyright: Files-Excluded: prettify.js (Javascript without source) * debian/rules: Enable gz and xz archives in clean target * rebuild with latest libperl Closes: #761134 -- Ivo Maintz Mon, 25 Aug 2014 14:16:04 +0200 libsbml (5.9.2+dfsg-1) UNRELEASED; urgency=medium [ Andreas Tille ] * New upstream version * debian/upstream -> debian/upstream/metadata * debian/control: Drop explicite ruby version in Build-Dependencies * debian/copyright: Files-Excluded: prettify.js (Javascript without source) * debian/rules: Enable gz and xz archives in clean target [ Ivo Maintz ] * added debian/bin/python_fix.sh to bypass a wrong path to the file Python.h * drop ruby bindings, can't get it compiled Closes: #735453 * debian/watch: readded the wildcards for *zip and other archive formats -- Ivo Maintz Wed, 05 Mar 2014 10:16:44 +0100 libsbml (5.8.0-2) unstable; urgency=medium * Put *.m files in the Octave path (thanks for the patch to Rafael Laboissiere ) Closes: #734048 -- Andreas Tille Sat, 04 Jan 2014 00:53:15 +0100 libsbml (5.8.0-1) unstable; urgency=low [ Ivo Maintz ] * update from upstream * switched to cmake for configure (following upstream) * added a patch to use correct matlab extensions in chrooted environments [ Andreas Tille ] * debian/control: - added libsbml5-dev to libsbml5-cli dependency Closes: #715111 - cme fix dpkg-control - canonical Vcs fields * debian/patches/format-security.patch: Enable compiling with -Werror=format-security * debian/libsbml5-perl.install: Do not try to install not existing override -- Andreas Tille Mon, 23 Dec 2013 21:32:47 +0100 libsbml (5.6.0-1) unstable; urgency=low [ Ivo Maintz ] * update from upstream * configured now with --enable-cpp-namespace [ Steffen Moeller ] * instrucing tar in clean target to keep permissions -- Ivo Maintz Thu, 06 Sep 2012 09:21:33 +0200 libsbml (5.4.1-4) UNRELEASED; urgency=low [ Steffen ] * Removed everyone from Uploaders except Ivo - Ivo also builds the libsbml5-matlab package, the control file is changed dynamically when the Matlab development environment is detected. - Matlab creator Mathworks provides their development package to help us. [ Andreas Tille ] * debian/upstream: Make author field BibTeX compliant -- Steffen Tue, 10 Apr 2012 13:50:44 +0200 libsbml (5.4.1-3) unstable; urgency=low * debian/control: removed dependency on swig2.0 (Closes: #667652) thanks to Peter Green for the hint. * debian/control: added myself to uploaders -- Thorsten Alteholz Thu, 05 Apr 2012 18:44:30 +0200 libsbml (5.4.1-2) unstable; urgency=low * added a patch to correct misspelled words in th source * debian/rules: added some lines to remove almost all lintian remarks * debian/*.docs: added, to have an upstream changelog in every package * debian/docs: removed, is not used anymore -- Ivo Maintz Fri, 30 Mar 2012 14:44:30 +0200 libsbml (5.4.1-1) unstable; urgency=low [ Ivo Maintz ] * update from upstream (Closes: #665837) * debian/control.in: added swig to libsbml5-python dependencies * debian/README.source: added some information * debian/rules: - added code to create a debian/libsbml5-octave.install file dependent on the install dircetory of the octave files - enhanced shlibdeps checking to remove the hardcoded dependency to libc6 Closes: #659808 * debian/dirs: deleted * debian/libsbml5-octave.install: deleted [ Andreas Tille ] * debian/control: - Added Homepage field - Versioned debhelper dependency * debian/compat: 8 * debian/rules: - remove useless dh_make boilerplate - adapt get-orig-source target to what is written in README.source and removed older repackaging code * mv debian/README.Debian-source debian/README.source * debian/docs: No point in installing debian/README.source * delete advise about how to get the source tarball in favour of the code written in debian/rules:get-orig-source target * debian/upstream: citation information -- Ivo Maintz Thu, 29 Mar 2012 18:04:00 +0200 libsbml (5.4.0-1) UNRELEASED; urgency=low * update from upstream * removed the libsbml5-*-doc packages; the docu don't compile with doxygen > 1.6.3 * moved libsbml5-matlab to contrib -- Ivo Maintz Tue, 21 Feb 2012 10:43:20 +0100 libsbml (5.3.0-1) UNRELEASED; urgency=low * update from upstream -- Ivo Maintz Thu, 12 Jan 2012 12:15:56 +0100 libsbml (5.2.0-1) unstable; urgency=low * Update from upstream * Initial upload (Closes: #241111, #277748). -- Ivo Maintz Mon, 14 Nov 2011 13:08:05 +0100 libsbml (5.1.0~b0-1) unstable; urgency=low * Upstream update * Fix debian/watch to find new upstream versions [Steffen] -- Ivo Maintz Mon, 19 Sep 2011 15:33:42 +0200 libsbml (3.4.0-1) UNRELEASED; urgency=low * Upstream update. -- Moriyoshi Koizumi Tue, 16 Jun 2009 19:42:00 +0900 libsbml (3.3.2-1) UNRELEASED; urgency=low * Upstream update. -- Moriyoshi Koizumi Wed, 03 Jun 2009 02:30:07 +0900 libsbml (3.3.1-1) UNRELEASED; urgency=low * Initial release (Closes: #241111) -- David Paleino Tue, 10 Feb 2009 14:36:09 +0100