libvcflib (1.0.12+dfsg-1) unstable; urgency=medium
[ Michael R. Crusoe ]
* d/control: formally mark this package as 64-bit little-endian only.
Closes: #1074044
[ Étienne Mollier ]
* d/watch: fix capture of pre-releases.
Somehow, the scraping of Github tags page tended to meddle with the
version capture, so this change introduces a switch to git mode, in
addition to modifications to version mangling.
* no_fsom patch: unfuzz.
* shared_lib.patch: unfuzz.
* tabix_linking.patch: unfuzz.
* use_debian_packaged_fastahack.patch: refresh.
* use_debian_packaged_libssw.patch: refresh.
* use_debian_packaged_smithwaterman.patch: unfuzz.
* wfa2_linking: unfuzz.
* cmakelists-fixups.patch: new: fix a couple of configure issues.
* d/libvcflib-tools.install: remove now missing vcfallelicprimitives.
* d/libvcflib-dev.install: adjust to new target directory.
[ Charles Plessy ]
* Build-depend on discount instead of markdown
Closes: #1073098
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.7.0 (routine-update)
* Replace transitional package pkg-config by pkgconf in Build-Depends
(routine-update)
-- Andreas Tille <tille@debian.org> Sun, 16 Feb 2025 14:54:48 +0100
libvcflib (1.0.9+dfsg1-3) unstable; urgency=medium
* add support for loong64 arch
Closes: #1057253
-- Andreas Tille <tille@debian.org> Sun, 03 Dec 2023 13:29:41 +0100
libvcflib (1.0.9+dfsg1-2) unstable; urgency=medium
* Source-only upload.
-- Andreas Tille <tille@debian.org> Sun, 06 Aug 2023 23:01:54 +0200
libvcflib (1.0.9+dfsg1-1) unstable; urgency=medium
* Bump SOVERSION due to ABI change
Closes: #1032557
* Attempt to use d-shlibs delayed for later once shared and static lib
are created both
* Drop unneeded header files with questionable licenses
-- Andreas Tille <tille@debian.org> Sun, 23 Jul 2023 10:42:25 +0200
libvcflib (1.0.9+dfsg-1) unstable; urgency=medium
[ Étienne Mollier ]
* New upstream version 1.0.9+dfsg
* d/patches: refresh everything.
* wfa2_linking: add patch; fix linker errors.
[ Andreas Tille ]
* libvcflib-dev: Depends: libwfa2-dev
Closes: #1031473
-- Andreas Tille <tille@debian.org> Sun, 19 Feb 2023 13:54:18 +0100
libvcflib (1.0.7+dfsg-2) unstable; urgency=medium
* Restrict architectures to 64bit only
-- Andreas Tille <tille@debian.org> Tue, 07 Feb 2023 21:10:50 +0100
libvcflib (1.0.7+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* Do not support ZIG compiler which is not packaged yet
* Build-Depends: python3-pybind11, libtabixpp-dev
* Fix name of upstream download tarball in watch file
* Versioned Build-Depends: libwfa2-dev (>= 2.3.2)
* Do not exclude Files that are not in upstream tarball any more
* New upstream version 1.0.6+dfsg
[ Nilesh Patra ]
* d/rules: Set WFA_GITMODULE to OFF
* Refresh/update patches
* Add some ext modules that are missed out in the tarball
* Add rules for getting ext libs to contrib and adding clean rules for
pruning them off for consecutive clean builds
* Add build depends on libhts-dev and python3-dev
* Pass more flags to get past the configure step
* d/rules: Get tests running, do not install py shared object lib
-- Andreas Tille <tille@debian.org> Tue, 07 Feb 2023 18:37:40 +0100
libvcflib (1.0.3+dfsg-2) unstable; urgency=medium
* Fix watch file
* Standards-Version: 4.6.1 (routine-update)
-- Andreas Tille <tille@debian.org> Fri, 07 Oct 2022 16:26:06 +0200
libvcflib (1.0.3+dfsg-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
[ Sascha Steinbiss ]
* Team upload.
* Fix manpage paths.
-- Sascha Steinbiss <satta@debian.org> Sun, 20 Feb 2022 19:24:58 +0100
libvcflib (1.0.2+dfsg-5) unstable; urgency=medium
[ Vagrant Cascadian ]
* Enable reproducible by avoid to embed the full path in RPATH
Closes: #1003808
[ Andreas Tille ]
* Add missing build dependency on dh addon.
-- Andreas Tille <tille@debian.org> Mon, 17 Jan 2022 20:53:03 +0100
libvcflib (1.0.2+dfsg-4) unstable; urgency=medium
* Install scripts
Closes: #989014
-- Andreas Tille <tille@debian.org> Fri, 24 Dec 2021 10:51:57 +0100
libvcflib (1.0.2+dfsg-3) unstable; urgency=medium
* Fix build with gcc-11
Closes: #984139
* Standards-Version: 4.6.0 (routine-update)
-- Andreas Tille <tille@debian.org> Wed, 20 Oct 2021 18:33:54 +0200
libvcflib (1.0.2+dfsg-2) unstable; urgency=medium
* Team upload.
* debian/rules: unit tests: Use DEB_HOST_GNU_TYPE instead of
DEB_HOST_MULTIARCH for finding the build directory
-- Michael R. Crusoe <crusoe@debian.org> Thu, 28 Jan 2021 13:03:40 +0100
libvcflib (1.0.2+dfsg-1) unstable; urgency=medium
[ Steffen Moeller ]
* Team upload.
* Added binaries expected by bcbio to /usr/bin
* d/rules - clean: Removing generated README.html
[ Michael R. Crusoe ]
* debian/copyright: Update Files-Excluded
* Standards-Version: 4.5.1 (routine-update)
* New upstream release
* Switch to cmake, update patches
-- Michael R. Crusoe <crusoe@debian.org> Thu, 28 Jan 2021 11:16:19 +0100
libvcflib (1.0.1+dfsg-4) unstable; urgency=medium
* Team upload.
* debian/patches/use_debian_packaged_smithwaterman.patch: adjust
inclusion of the packaged
/usr/include/smithwaterman/SmithWatermanGotoh.h
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* Update patch headers.
* IntervalTree.h patch is no longer needed
-- Michael R. Crusoe <crusoe@debian.org> Sat, 31 Oct 2020 21:57:30 +0100
libvcflib (1.0.1+dfsg-3) unstable; urgency=medium
* Team upload.
* Improve the usage of these packages during cross-building
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 12 Feb 2020 13:00:17 +0100
libvcflib (1.0.1+dfsg-2) unstable; urgency=medium
* Team upload.
* -tools: add ${perl:Depends}
* libvcflib{1,-dev}: add Multi-Arch: same
* Standards-Version: 4.4.1
-- Michael R. Crusoe <michael.crusoe@gmail.com> Thu, 26 Dec 2019 15:54:27 +0100
libvcflib (1.0.1+dfsg-1) unstable; urgency=medium
* New upstream release
* Updated homepage URL
* Major rewrite of patches
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 11 Dec 2019 13:11:23 +0100
libvcflib (1.0.0+dfsg-2) unstable; urgency=medium
* Use 2to3 to port to Python3
Closes: #936930
* Use markdown instead of python-markdown
-- Andreas Tille <tille@debian.org> Fri, 06 Sep 2019 09:05:48 +0200
libvcflib (1.0.0+dfsg-1) unstable; urgency=medium
* Team upload.
* New upstream version; patches refreshed
* libvcflib-tools: promote vcffilter to /usr/bin; add basic autopkgtests
* hardening fixed
* update libvcflib.pc to reference upstream libraries
* fixed spelling typos
* updated debian/include/IntervalTree.h from https://github.com/ekg/intervaltree/blob/master/IntervalTree.h
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 04 Sep 2019 13:00:09 +0900
libvcflib (1.0.0~rc2+dfsg-4) unstable; urgency=medium
* Move manpage to vcflib-tools package
Closes: #933649
-- Andreas Tille <tille@debian.org> Thu, 01 Aug 2019 14:39:28 +0200
libvcflib (1.0.0~rc2+dfsg-3) unstable; urgency=medium
* Move vcf2tsv and vcfkeepinfo to /usr/bin since it is needed by freebayes
test
* debhelper-compat 12
* Standards-Version: 4.4.0
* Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
* Remove trailing whitespace in debian/control
* Override dh_dwz to do nothing
-- Andreas Tille <tille@debian.org> Wed, 31 Jul 2019 16:12:42 +0200
libvcflib (1.0.0~rc2+dfsg-2) unstable; urgency=medium
* Add libfastahack to pkg-config input file
* Depends: libfastahack-dev
-- Andreas Tille <tille@debian.org> Fri, 14 Sep 2018 13:56:52 +0200
libvcflib (1.0.0~rc2+dfsg-1) unstable; urgency=medium
[ Steffen Moeller ]
* Created debian/upstream/metadata for references to
registries.
[ Andreas Tille ]
* New upstream version
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
* Versioned Build-Depends:
libfastahack-dev (>= 0.0+git20160702.bbc645f+dfsg-5~)
* Fix header file name
* Build-Depends: libbz2-dev
* Fix installation target dir
* Fix interpreter lines and add missing interpreter dependencies
-- Andreas Tille <tille@debian.org> Thu, 13 Sep 2018 22:34:23 +0200
libvcflib (1.0.0~rc1+dfsg1-6) unstable; urgency=medium
* Test suite of freebayes 1.1.0 needs vcfuniq and vcfstreamsort in PATH
so add according links
* Standards-Version: 4.1.0
-- Andreas Tille <tille@debian.org> Mon, 04 Sep 2017 16:05:56 +0200
libvcflib (1.0.0~rc1+dfsg1-5) unstable; urgency=medium
* Fix watch file
-- Andreas Tille <tille@debian.org> Sat, 17 Jun 2017 23:45:29 +0200
libvcflib (1.0.0~rc1+dfsg1-4) experimental; urgency=medium
* Re-add pkg-config file for easier usage in freebayes which was reverted
to meet freeze policy
-- Andreas Tille <tille@debian.org> Fri, 17 Mar 2017 13:29:20 +0100
libvcflib (1.0.0~rc1+dfsg1-3) unstable; urgency=medium
* Fix location of binary tools
Closes: #856424
* Remove empty debian/upstream/metadata boilerplate
-- Andreas Tille <tille@debian.org> Wed, 01 Mar 2017 15:43:05 +0100
libvcflib (1.0.0~rc1+dfsg1-2) experimental; urgency=medium
* Add pkg-config file for easier usage in freebayes
-- Andreas Tille <tille@debian.org> Fri, 10 Feb 2017 09:09:35 +0100
libvcflib (1.0.0~rc1+dfsg1-1) unstable; urgency=medium
* Adapt to recent PIE changes in dpkg (Thanks for the patch to Adrian Bunk
<bunk@stusta.de>)
Closes: #844890
* d/watch: version=4
* debhelper 10
* Remove code copy of libssw
Closes: #838513
* Add lintian overrides for false positive
-- Andreas Tille <tille@debian.org> Tue, 22 Nov 2016 13:13:12 +0100
libvcflib (1.0.0~rc1+dfsg-1) unstable; urgency=low
* Initial release (Closes: #838020)
-- Andreas Tille <tille@debian.org> Fri, 16 Sep 2016 15:52:29 +0200