mafft for Debian ---------------- The mafft program is tested when we assemble our binary packages in our build network. The following commands are run and compared to a reference output: mafft test/sample | diff test/sample.fftns2 - mafft --maxiterate 100 test/sample | diff test/sample.fftnsi - mafft --globalpair test/sample | diff test/sample.gins1 - mafft --globalpair --maxiterate 100 test/sample | diff test/sample.ginsi - mafft --localpair test/sample | diff test/sample.lins1 - mafft --localpair --maxiterate 100 test/sample | diff test/sample.linsi - The test sample and the reference output are distributed compressed in the mafft binary package in the ‘/usr/share/doc/mafft/test’ directory. You can copy this directory to a temporary place, uncompress the files and run the above commands to reproduce the tests on your local installation. -- Charles Plessy Mon, 14 Dec 2009 12:43:21 +0900