mira (4.9.6-11) unstable; urgency=medium * Do not fail when attempting to remove not exiting files Closes: #1049789 * Fix clean target Closes: #1045311 -- Andreas Tille Tue, 06 Feb 2024 11:41:10 +0100 mira (4.9.6-10) unstable; urgency=medium * Team Upload. * Echo date with UTC explicitly to avoid TZ related pitfalls * Update lintian override * Do not export SOURCE_DATE_EPOCH manually, it is already exported as a part of default.mk dpkg import * Bump Standards-Version to 4.6.2 (no changes needed) -- Nilesh Patra Wed, 21 Jun 2023 09:11:37 +0530 mira (4.9.6-9) unstable; urgency=medium * Team Upload. * Make package cross-build + Drop un-needed B-D on perl + Pass boost include dir and libdir for easy cross-compilation * Add override for README.html, source is present in the source package. * Set SOURCE_DATE_EPOCH, ISDEBIAN and DEBIAN_MAINTAINER to get debian-specific repro builds working. * Add patch to: + Fix upstream mistake, actually echo DEBIAN_MAINTAINER name + convert source-date-epoch to actual date to put into compileinfo -- Nilesh Patra Sun, 18 Jun 2023 17:56:43 +0530 mira (4.9.6-8) unstable; urgency=medium * Team Upload. * Add patch to fix FTBFS with gcc-13 (Closes: #1037778) -- Nilesh Patra Sun, 18 Jun 2023 01:09:50 +0530 mira (4.9.6-7) unstable; urgency=medium * Team Upload. * Add patch to fix gcc-12 FTBFS (Closes: #1013000) -- Nilesh Patra Fri, 24 Jun 2022 20:01:35 +0000 mira (4.9.6-6) unstable; urgency=medium * Team upload. [ Lance Lin ] * Remove build-depends on vim-common and add xxd (Closes: #1007986) [ Andreas Tille ] * Standards-Version: 4.6.0 (routine-update) * Do not parse d/changelog (routine-update) * Clean-up list of Uploaders from people not working on this package any more (thanks a lot for all previous contributions -- Lance Lin Wed, 06 Apr 2022 15:18:07 +0200 mira (4.9.6-5) unstable; urgency=medium * Team upload [ Michael R. Crusoe ] * Update homepage URL * Mark mira-doc as Multi-Arch: foreign * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/control * Remove trailing whitespace in debian/copyright [ Andreas Tille ] * Remove unneeded get-orig-source target * fix race condition during doc build Closes: #970443 * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Do not parse d/changelog (routine-update) * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set field Upstream-Name in debian/copyright. [ Nilesh Patra ] * s/DEB_SOURCE/pkg/ * Remove useless debian/*.dirs -- Nilesh Patra Thu, 17 Sep 2020 16:34:27 +0530 mira (4.9.6-4) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: Added references to OMICtools and bio.tools [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * No extra manpages from Debian -- Andreas Tille Wed, 19 Sep 2018 22:13:29 +0200 mira (4.9.6-3) unstable; urgency=medium * Team upload. [ Nadiya Sitdykova ] * Add autopkgtest test-suite for denovo, mapping and est assembly -- Nadiya Sitdykova Mon, 12 Jun 2017 18:29:50 -0400 mira (4.9.6-2) unstable; urgency=medium * debhelper 10 * d/watch: version=4 * Build-Depends: libfl-dev Closes: #846442 * Remove unused lintian override -- Andreas Tille Sat, 03 Dec 2016 19:05:24 +0100 mira (4.9.6-1) unstable; urgency=medium * New upstream release. * dropped all patches except for one spelling fix, as they were incorporated upstream * dropped the -examples package for now, as the minidemo is missing from upstream in this release. * our manpages have been adopted and adapted upstream, so they have been removed * added architecture independent package for rfam 12s rRNA database * enable building docs & rfam packages separately * Standards-Version bump to 3.9.8 * Updated package descriptions to remove tools that upstream no longer provides * minidemo is missing from 4.9.6, commented out -examples package for now * cleaned out unnecessary stanzas from debian/rules -- Michael R. Crusoe Wed, 04 May 2016 11:18:26 -0700 mira (4.9.5-6) unstable; urgency=medium * Fix build issue with gcc-6 Closes: #822474 -- Andreas Tille Mon, 25 Apr 2016 23:48:55 +0200 mira (4.9.5-5) unstable; urgency=medium * Make build reproducible; fix FTBFS on non-'C' locales -- Michael R. Crusoe Wed, 03 Feb 2016 06:31:56 +0000 mira (4.9.5-4) unstable; urgency=medium * Packaging moved from SVN to Git * Loosen boost dependencies. -- Michael R. Crusoe Tue, 02 Feb 2016 00:45:21 -0800 mira (4.9.5-3) unstable; urgency=medium * Remove *.cc files that are created by old flex version which breaks build otherwise Closes: #812681 -- Andreas Tille Wed, 27 Jan 2016 13:19:53 +0100 mira (4.9.5-2) unstable; urgency=medium * Verify that package builds without problems with gcc-5 Closes: #793261 * override false lintian positives * Fix spelling * wrote missing manpage and moved manpages to separate dir -- Andreas Tille Fri, 04 Dec 2015 12:56:09 +0100 mira (4.9.5-1) unstable; urgency=medium * New upstream version * Moved debian/upstream to debian/upstream/metadata * cme fix dpkg-control -- Andreas Tille Wed, 01 Jul 2015 22:09:47 +0200 mira (4.0.2-1) unstable; urgency=low * new upstream version -- Thorsten Alteholz Sat, 26 Apr 2014 19:00:35 +0200 mira (4.0-1) unstable; urgency=low [ Thorsten Alteholz ] * New upstream version * debian/rules: add boost dir in auto_configure (Closes: #735798) [ Andreas Tille ] * cme fix dpkg-control * debian/patches/{make.patch,spelling.patch}: applied upstream (thus removed) -- Thorsten Alteholz Sun, 02 Feb 2014 22:51:35 +0100 mira (3.9.18-1) unstable; urgency=low * New upstream version (most patches applied by upstream) * debian/copyright: Add Upstream-Contact * debian/control: cme fix dpkg-control * debian/mira-assembler.lintian-overrides: deleted unused override * debian/rules: Prevent installing duplicated data, rather create symlink * debian/mirabait.1: wrote missing manpage -- Andreas Tille Fri, 09 Aug 2013 13:59:24 +0200 mira (3.9.17-1) unstable; urgency=low [ Thorsten Alteholz ] * new upstream version * debian/control: Standards-Version set to 3.9.4 (no changes) * debian/control: DM-Upload-Allowed: removed * debian/control: use dh 9 * debian/control: add dependency to libboost-iostreams-dev * debian/control: improve extended descriptions * debian/control: change VCS-tags according to new lintian * debian/rules: get-orig-source added * debian/watch: do not look at dev-versions * debian/mira-doc.README.Debian: correct path to documentation [ Dmitrijs Ledkovs ] * Build depend on libboost-all-dev and libbz2-dev. * Add boost-minimal patch, to add boost-libraries in final linking, fixing FTBFS (Closes: #701322) * Enable parallel builds, to speed up compilation. [ Andreas Tille ] * delete debian/README.source which is outdated / wrong * debian/*.1: Wrote / reviewed manpages for all installed programs * debian/miraSearchESTSNPs.1: Wrote manpage but mention that this functionality is deactivated in version 3.9.17 * debian/mira-assembler.manpages: Simply install all manpages that can be found * Removed debian/obsolete.mira-assembler.install * debian/control: The actual scripts do not contain the .tcl suffix in our installation * debian/rules: - Currently miraSearchESTSNPs and miraclip claim to be deactivated so why bothering installing these? - Use xz compression for binaries -- Andreas Tille Fri, 07 Jun 2013 08:34:21 +0200 mira (3.4.0.1-3) unstable; urgency=low [ Charles Plessy ] * Build-depend on libgoogle-perftools-dev instead of libtcmalloc-minimal0 (debian/control, debian/README.source, debian/rules). Closes: #673527, #674822 * Conforms to Policy 3.9.3 (debian/control, no other changes needed). * Rely on dpkg source format 3.0 (quilt) for the patches, and remove build dependance on quilt (debian/control, debian/rules). * Verbose Debhelper (debian/rules). [ Andreas Tille ] * debian/upstream: very small fix to prevent bibcheck warning -- Charles Plessy Mon, 28 May 2012 10:51:01 +0900 mira (3.4.0.1-2) unstable; urgency=low [ Andreas Tille ] * Remove two patches: - read_default_constructor.patch which introduces a duplicate bposhashstat_t() definition - fix_duplicate_bposhashstat_t_definition.patch which removes this duplicate afterwards [ Charles Plessy ] * Removed unconditional dependency on libtcmalloc-minimal0 (debian/control). Closes: #654884 * Machine-readable debian/copyright file. -- Charles Plessy Sat, 07 Jan 2012 13:24:48 +0900 mira (3.4.0.1-1) unstable; urgency=low * New upstream version Closes: #648762 (at least if I'm not mislead - feel free to reopen) * debian/control: - Added myself to Uploaders - Depends: libtcmalloc-minimal0 [i386 amd64] Thanks for the patch to Michael Terry however I left out powerpc where libtcmalloc-minimal0 is not available Closes: #649093 - Fixed Vcs fields * debian/patches/fix_duplicate_bposhashstat_t_definition.patch Remove duplicate definition of bposhashstat_t() -- Andreas Tille Thu, 08 Dec 2011 08:50:19 +0100 mira (3.4.0-3ubuntu1) lucid; urgency=low * Small fix to dependencies - there is no "mira" binary package -- Tim Booth Fri, 02 Dec 2011 15:00:35 +0000 mira (3.4.0-3) unstable; urgency=low * Rendering Tim's additions available for Debian -- Steffen Moeller Sat, 03 Sep 2011 01:02:10 +0200 mira (3.4.0-2ubuntu5) lucid; urgency=low * Small fix to clean target and suppress warnings on Lucid backport. * Fixed missing dependency which caused misleading configure failure. * Yet another missing build dep - flex and xxd -- Tim Booth Tue, 30 Aug 2011 17:17:11 +0100 mira (3.4.0-2) unstable; urgency=low * Fixing source tree (removed PDF with no source) -- Steffen Moeller Mon, 29 Aug 2011 22:54:53 +0200 mira (3.4.0-1) UNRELEASED; urgency=low * New upstream version. - added default constructor to avoid FTBFS * Sponsoring Tim's work for Debian * Using 3.0 (quilt) source format for bz2 upstream -- Steffen Moeller Tue, 23 Aug 2011 20:46:32 +0200 mira (3.4rc3-2) lucid; urgency=low * Version 3.2.1.8 has been removed from SF.net. Packaging the latest RC instead. * Fixed linking against tcmalloc (see README) * Fixed build of docs - HTML is installed in mira-doc -- Tim Booth Fri, 19 Aug 2011 12:35:12 +0100 mira (3.2.1.8-1) UNRELEASED; urgency=low * Initial release (Closes: #435915) -- Steffen Moeller Fri, 04 Mar 2011 11:55:25 +0100 mira (3~rc2-1) UNRELEASED; urgency=low * Initial packaging. -- Charles Plessy Tue, 08 Sep 2009 13:35:31 +0900