mmseqs2 (14-7e284+ds-1) unstable; urgency=medium * Team upload. * Fix watch file * Standards-Version: 4.6.1 (routine-update) * lintian-overrides (see lintian bug #1017966) -- Andreas Tille Thu, 24 Nov 2022 13:02:17 +0100 mmseqs2 (13-45111+ds-2) unstable; urgency=medium * Team upload. * Fix watchfile to detect new versions on github * Standards-Version: 4.6.0 (routine-update) -- Andreas Tille Tue, 12 Oct 2021 10:54:01 +0200 mmseqs2 (13-45111+ds-1) unstable; urgency=medium * Team upload. * New upstream release, many bugs fixed. * debian/copyright: freshen, exclude xxhash * No tab in license text (routine-update) * Refresh patches. * debian/upstream/metadata: add their new preprint * Drop 32-bit archs as per upstream. -- Michael R. Crusoe Wed, 10 Mar 2021 11:02:39 +0100 mmseqs2 (12-113e3+ds-3) unstable; urgency=high * Team upload. * debian/control: disable building on big-endian at the request of upstream. -- Michael R. Crusoe Fri, 12 Feb 2021 15:31:20 +0100 mmseqs2 (12-113e3+ds-2) unstable; urgency=medium * Team upload. * Forwarded spelling patch upstream * debian/rules: Disable -march=native also on !x86, courtesy of Adrian Bunk -- Michael R. Crusoe Sun, 15 Nov 2020 19:29:37 +0100 mmseqs2 (12-113e3+ds-1) unstable; urgency=medium * Team upload. * New upstream version * Freshen debian/copyright * debian/rules: Ensure all for-loops fail if there is an error * Build-depend on libsimde-dev 0.6.0-2 to get i386 patches from upstream * debian/patches/spelling: fix typos -- Michael R. Crusoe Wed, 02 Sep 2020 13:17:12 +0200 mmseqs2 (11-e1a1c+ds-4) unstable; urgency=medium * Team upload. * debian/patches/simde: Fix for i386 (Closes: #961101). * debian/rules: simplify the multi-build * debhelper-compat 13 (routine-update) -- Michael R. Crusoe Mon, 31 Aug 2020 14:25:45 +0200 mmseqs2 (11-e1a1c+ds-3) unstable; urgency=medium * Team upload. [ Alberto Garcia ] * debian/patches/fix-ftbfs-gcc10.patch: - Fix FTBFS with GCC 10 (Closes: #957552). [ Michael R. Crusoe ] * Accept the patch from Alberto, thanks! * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) -- Michael R. Crusoe Mon, 04 May 2020 17:30:26 +0200 mmseqs2 (11-e1a1c+ds-2) unstable; urgency=medium * Install binaries only in the mmseqs2 binary package, not also the mmseqs2-examples binary package * Report the Debian package version instead of "GITDIR-NOTFOUND" * Small tweak to simde patch * Use a newer libsimde-dev that fixes a bug found by this package -- Michael R. Crusoe Fri, 24 Apr 2020 22:21:06 +0200 mmseqs2 (11-e1a1c+ds-1) unstable; urgency=medium * Team upload. * Enable building on non-X86 and with less than SSE4.1 using libsimde-dev * Mark mmseqs2-examples as Multi-Arch: foreign * Clean up debian/copyright * debian/upstream/metadata: add GitHub related fields -- Michael R. Crusoe Thu, 23 Apr 2020 22:39:06 +0200 mmseqs2 (10-6d92c+ds-2) unstable; urgency=medium * Team upload. * Do not misuse d/changelog as another README.source -> thus moved TODO item from d/changelog to README.source * Standards-Version: 4.5.0 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Remove trailing whitespace in debian/copyright (routine-update) * Do not try to call tests that are removed upstream Closes: #951165 -- Andreas Tille Tue, 11 Feb 2020 22:57:58 +0100 mmseqs2 (10-6d92c+ds-1) unstable; urgency=medium * Team upload. * New upstream version * debhelper-compat 12 (routine-update) * Standards-Version: 4.4.1 (routine-update) -- Steffen Moeller Sun, 19 Jan 2020 14:16:12 +0100 mmseqs2 (9-d36de+ds-4) unstable; urgency=medium * Team upload. [ Shayan Doust ] * Fix some pathing for different archs * Exclude some archs -- Andrius Merkys Tue, 22 Oct 2019 01:02:46 -0400 mmseqs2 (9-d36de+ds-3) unstable; urgency=medium * Team upload. [ Steffen Moeller ] * d/u/metadata: yamllint [ Andreas Tille ] * Fix spelling -- Andrius Merkys Fri, 18 Oct 2019 00:44:22 -0400 mmseqs2 (9-d36de+ds-2) unstable; urgency=medium * Fixed changelog * Patch to fix the matrix serialization test * Forgot to deallocate within serialization patch * Fix test_bestalphabet binary. Now works. This is used within autopkgtest * Patch to fix test_alignmentperformance I have excluded this as it takes a *very* long time to perform and probably isn't worth it. Probably should be used alongside a profiler * Patch test_dbreader and include this in the unit test * Patch dbreaderserialization test and include in unit test * Patch to fix test_dbreaderzstd and include it in the unit test * Patch to fix test_indextable * This package is only 64 bit, set it as that * Append to copyright more entries that were missed out * Detect and write more copyright entries using decopy * Add more entries to the copyright file * Delete some unnecessary lib files and outputs These are used during build and serve no purpose to the end users * libbz2-dev as a new dependency as mmseqs2 accepts *.bz inputs * Copyright edit and changelog append * Forgot to set environmental variable -- Shayan Doust Thu, 25 Jul 2019 03:38:36 +0100 mmseqs2 (9-d36de+ds-1) unstable; urgency=medium * Initial release (Closes: #932369) -- Shayan Doust Mon, 15 Jul 2019 13:45:03 +0100