openms (2.6.0+cleaned1-3) unstable; urgency=medium * Team upload. * Include code copy of header files of seqan-dev (limited to those header files that are needed to build the package) Closes: #982567 * Document code copy of seqan in debian/README.source * Add debian/salsa-ci.yml -- Andreas Tille Tue, 02 Mar 2021 08:20:17 +0100 openms (2.6.0+cleaned1-2) unstable; urgency=low * Implement the patch by Logan Rosen to fix the GLPK version check that doesn't account for major version, fixing FTBFS against GLPK 5. Thanks, Logan! Closes: #978194. Patch suggested upstream. -- Filippo Rusconi Mon, 04 Jan 2021 20:12:34 +0100 openms (2.6.0+cleaned1-1) unstable; urgency=low * New upstream version. * d/copyright: whole project revision, many files added. * Fix bug (Closes: #975588), required specifying libboost packages with version: libboost1.74-dev, libboost-iostreams1.74-dev, libboost-date-time1.74-dev, libboost-math1.74-dev. -- Filippo Rusconi Tue, 15 Dec 2020 14:29:00 +0100 openms (2.5.0+cleaned1-5) unstable; urgency=low * Fix the bug on mipsel (Closes: #964315). Thanks to Adrian Bunk for the fix. -- Filippo Rusconi Wed, 08 Jul 2020 00:39:47 +0200 openms (2.5.0+cleaned1-4) unstable; urgency=low * Fix the stable->sid upgrade problem (Breaks+Replaces bug ; Closes:#962832 ; thanks to Andreas Beckmann ) for reporting the piuparts-detected failure. -- Filippo Rusconi Mon, 15 Jun 2020 09:57:32 +0200 openms (2.5.0+cleaned1-3) unstable; urgency=low * Cleanup the Replaces/Conflics field to simplify to last reasonable version: libopenms2.4.0-real-1. * Since we replace the old version, lets close the bug that was kindly reported by Paolo Greppi (Closes: #943450). -- Filippo Rusconi Fri, 12 Jun 2020 14:59:53 +0200 openms (2.5.0+cleaned1-2) unstable; urgency=low * Fix location of the header files. * Some other improvements to the packaging. -- Filippo Rusconi Tue, 02 Jun 2020 15:28:50 +0200 openms (2.5.0+cleaned1-1) unstable; urgency=low * New upstream version. -- Filippo Rusconi Tue, 12 May 2020 14:31:14 +0200 openms (2.4.0-real-2) UNRELEASED; urgency=low * debian/binaries-extract-one-line-man-desc.sh: Fix a non-reproducible build failure. * debian/control: Standards-Version: 4.3.0 -- Filippo Rusconi Fri, 08 Mar 2019 10:23:37 +0100 openms (2.4.0-real-1) unstable; urgency=low * Really released 2.4.0 version with Qt5 port merged; * d/control: update website url to http://www.openms.de (thanks to Adrian Bunk ; Closes: #906561); * d/copyright: update website url and copyright years. add Design Science License (Thanks to Dmitry Smirnov , Closes: #822412); * d/control: fix libqt5opengl5-dev (>= 5.7.0) to libqt5opengl5-desktop-dev (>= 5.7.0) because upstream won't support OpenGL ES anytime soon (thanks to Adrian Bunk , Closes: #906666); * Use secure copyright file specification URI. * Trim trailing whitespace. Jelmer Vernooij Mon, 15 Oct 2018 06:59:37 +0000 * debian/control: Change "Conflicts:" to "Breaks:" (Closes: #816562); -- Filippo Rusconi Sat, 17 Nov 2018 17:24:48 +0100 openms (2.4.0-1) unstable; urgency=low * New upstream version (release branch with Qt5 port merged). -- Filippo Rusconi Thu, 16 Aug 2018 13:45:17 +0200 openms (2.3-20180419-git-a0b7f650-1) experimental; urgency=low * New upstream version (development branch with Qt5 port merged). -- Filippo Rusconi Thu, 19 Apr 2018 11:02:39 +0200 openms (20170907-1) UNRELEASED; urgency=medium * New upstream version ported to Qt5. -- Filippo Rusconi Wed, 06 Sep 2017 10:47:49 +0200 openms (2.0.0-4) unstable; urgency=medium * debian/control: Change "Conflicts:" to "Breaks:" (Closes: #816562); * debian/rules: fix the OPENMS_DATA_PATH value so that it points to /us/share/openms-common and not /usr/share/openms-common/OpenMS. * debian/rules: Put dh_clean at the end of the clean target. * switched doc_minimal doc_class_only targets around in the make call because the doxygen-based documentation for the classes did not get generated fully. * Remove the git protocol URL for the repos and switch to secure http for the other URL. * debian/control: Standards-Version: 3.9.7. No changes required. * debian/rules: Reinstate DEB_BUILD_MAINT_OPTIONS along with the hardening flag +all.. * debian/rules: Make sure libSuperHirn and libOpenMS_GUI libraries are processed fine with respect to the symbols control file. -- Filippo Rusconi Wed, 30 Mar 2016 12:06:31 +0200 openms (2.0.0-3) unstable; urgency=medium * Ship the dynamically generated cmake files to the -dev package. * Improve the build system patch to state that we prefer libboost shared objects. * debian/rules: Packaging (debian/*.install files) now uses the material that has been installed with make install DESTDIR=debian/build after cmake call with -DCMAKE_INSTALL_PREFIX=/usr. -- Filippo Rusconi Mon, 18 Jan 2016 21:35:18 +0100 openms (2.0.0-2) unstable; urgency=medium * Ship the code examples to the openms-doc package. These examples are partially described in the documentation (html format) but having the whole code files is more interesting. * d/control: add "Replaces: libopenms-1.11" to fix upgrade problem (Closes: #810356), thanks to Andreas Beckmann for the report. * Bump-up debian/compat to 9. * debian/watch: use sf redirector. -- Filippo Rusconi Thu, 14 Jan 2016 12:36:43 +0100 openms (2.0.0-1) unstable; urgency=medium * New upstream version (Closes: #790624 ; Closes: #804496). -- Filippo Rusconi Mon, 17 Aug 2015 17:17:37 +0200 openms (1.11.1-5) unstable; urgency=medium * mv upstream upstream/metadata -- Filippo Rusconi Mon, 18 Aug 2014 11:48:52 +0200 openms (1.11.1-4) unstable; urgency=low * Apply a patch suggested by Stephan Aiche to fix the failure when buiding the manuals using the LaTeX code created by Doxygen. * Create debian/missing-sources/jquery-1.7.1.js with the source file from http://code.jquery.com/jquery-1.7.1.js (lintian warning). * Add #DEBHELPER# to postinst (lintian warning). * Fix syntax error in the copyright file (lintian warning). * Remove ${shlibs:Depends} from Depends: of -common and -doc. * debian/copyright: fix syntax of the copyright field of the Files: * section. -- Filippo Rusconi Mon, 30 Jun 2014 09:46:50 +0200 openms (1.11.1-3) unstable; urgency=low * remove version number from libbost development package names; * ensure that AUTHORS is correctly shipped in all packages. -- Filippo Rusconi Fri, 20 Dec 2013 11:30:16 +0100 openms (1.11.1-2) unstable; urgency=low * New upstream release. * debian/control: canonicalize the Vcs-Git and Vcs-Browser fields; * debian/control: remove the Conflicts declaration for -dev, which is not required at all; * add *.desktop files to reference OpenMS in the non-Debian menus (thanks to Olivier Langella). Note that preexisting topp.menu shows the menus in the Debian menu if menu-xdg is installed. Sent enquiry about having these two files included in upstream. * Standards-Version: 3.9.4; -- Filippo Rusconi Thu, 19 Dec 2013 09:41:22 +0100 openms (1.11.0-1) UNRELEASED; urgency=low * New upstream release. -- Filippo Rusconi Wed, 10 Jul 2013 22:54:41 +0200 openms (1.10.0-1) UNRELEASED; urgency=low * New upstream release. -- Filippo Rusconi Wed, 10 Jul 2013 22:54:41 +0200 openms (1.9.0-4) unstable; urgency=low * debian/rules: reinstate the .NOTPARALLEL: directive to preclude parallelization of the build, as the errors are too complicated to follow in the build log. Also inhibit the parallel=%,$(DEB_BUILD_OPTIONS) and NUMJOBS options processing, as suggested by Aaron M. Ucko" (Closes: #702606). -- Filippo Rusconi Fri, 29 Mar 2013 13:05:15 +0100 openms (1.9.0-3) unstable; urgency=low * debian/rules: fix problem with DEB_BUILD_GNU_TYPE not holding proper values on some platforms, like i386, by adding DEB_HOST_MULTIARCH. Thanks to "Aaron M. Ucko" (Closes: #702512); * Fix the watch file, thanks to Nick Black (Closes: #702518); * New code in patch ensures that there is no creation of symlinks by CMake after building of the libraries, since the symlinks are created anyways in debian/. -- Filippo Rusconi Thu, 07 Mar 2013 18:38:56 +0100 openms (1.9.0-2) unstable; urgency=low * Transition from experimental to unstable. Tests were positive. * Fix non-inclusion of generated config include files in the /usr/include/OpenMS directory -- Filippo Rusconi Wed, 06 Mar 2013 14:11:11 +0100 openms (1.9.0-1) experimental; urgency=low * 1.9.0 First Debian package release (Closes: #691129). -- Filippo Rusconi Mon, 12 Nov 2012 15:58:12 +0100