The script flatten_json.py was put into /usr/bin. This is unfortunate since too generic to not expect conflicts between packages "real soon". A symbolic link to pizzly_flatten_json.py is also offered to allow the flatten_json.py executable to mv to /usr/share/pizzly. We work with the community, and here this mostly means upstream and conda, to smoothen the experience. For now, Debian's immediate aim is the best-possible compatibility with the scientific community's established workflows. That script is explicitly requested by bcbio. -- Steffen Moeller Tue, 04 Jun 2019 16:34:06 +0200