python-cobra (0.29.1-1) unstable; urgency=medium
* Team upload.
* New upstream version 0.29.1
* Add a patch to replace appdirs with platformdirs (Closes: #1067989)
-- Alexandre Detiste <tchet@debian.org> Sun, 22 Sep 2024 14:54:56 +0200
python-cobra (0.29.0-3) unstable; urgency=medium
* Team upload.
* Remove reference to old python3-simplejson
-- Alexandre Detiste <tchet@debian.org> Sat, 31 Aug 2024 00:49:17 +0200
python-cobra (0.29.0-2) unstable; urgency=medium
* Team upload.
* Build-Depends: s/libsbml5/libsbml5-dev/
Closes: #1069985
* Standards-Version: 4.7.0 (routine-update)
-- Andreas Tille <tille@debian.org> Sun, 28 Apr 2024 07:31:52 +0200
python-cobra (0.29.0-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update)
* remove extraneous dependency on python3-future
Closes: #1058070
-- Andreas Tille <tille@debian.org> Tue, 12 Dec 2023 16:57:31 +0100
python-cobra (0.26.3-2) unstable; urgency=medium
* Team Upload.
* Add patch to skip a test on 32-bit
-- Nilesh Patra <nilesh@debian.org> Wed, 20 Sep 2023 19:50:59 +0530
python-cobra (0.26.3-1) unstable; urgency=medium
[ Étienne Mollier ]
* Team upload.
* New upstream version 0.26.3
* mathjax.patch: unfuzz.
* do-not-seek-for-name.patch: unfuzz.
* numpy_1.24.patch: delete; applied upstream.
* d/control: remove dependency on obsolete package version.
[ Nilesh Patra ]
* Add Versioned B-D on optlang and swiglpk
(Closes: #1042310)
-- Nilesh Patra <nilesh@debian.org> Fri, 15 Sep 2023 23:50:34 +0530
python-cobra (0.26.2-1) unstable; urgency=medium
* Team upload.
* New upstream version 0.26.2
* d/t/run-unit-test: avoid interfering with user's home.
* d/python-cobra-data.lintian-overrides: update overrides.
-- Étienne Mollier <emollier@debian.org> Sun, 05 Feb 2023 22:14:10 +0100
python-cobra (0.26.0-3) unstable; urgency=medium
* Team upload.
* Standards-Version: 4.6.2 (routine-update)
* Fix AttributeError: module 'numpy' has no attribute 'float'
Closes: #1027252
-- Andreas Tille <tille@debian.org> Thu, 29 Dec 2022 13:03:36 +0100
python-cobra (0.26.0-2) UNRELEASED; urgency=medium
* Team upload.
-- Andreas Tille <tille@debian.org> Thu, 29 Dec 2022 12:33:19 +0100
python-cobra (0.26.0-1) unstable; urgency=medium
[ Étienne Mollier ]
* Team upload.
* New upstream version
[ Andreas Tille ]
* Build-Depends: python3-importlib-resources, python3-pytest-mock
* Standards-Version: 4.6.1 (routine-update)
* Ignore tests accessing remote locations
* Fix watch file
* Since python3-sbml5 can only deal with one Python3 version we
restrict the test to default Python3
[ Nilesh Patra ]
* Add patch to fix build
-- Andreas Tille <tille@debian.org> Thu, 24 Nov 2022 09:06:25 +0100
python-cobra (0.23.0-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
-- Andreas Tille <tille@debian.org> Sat, 19 Feb 2022 08:53:02 +0100
python-cobra (0.22.1-1) unstable; urgency=medium
* Team upload.
* New upstream version
-- Nilesh Patra <nilesh@debian.org> Mon, 23 Aug 2021 00:54:10 +0530
python-cobra (0.22.0-1) unstable; urgency=medium
* Team Upload.
* New upstream version 0.22.0
* Refresh patches
-- Nilesh Patra <nilesh@debian.org> Sun, 15 Aug 2021 19:37:28 +0530
python-cobra (0.21.0-1) unstable; urgency=high
* Team upload.
* New upstream version
Closes: #978032
* Standards-Version: 4.5.1 (routine-update)
* No tab in license text (routine-update)
* watch file standard 4 (routine-update)
* Build-Depends: python3-appdirs, python3-httpx, python3-pydantic,
python3-rich
* Versioned Build-Depends: python3-swiglpk (>= 4.65.1)
-- Andreas Tille <tille@debian.org> Tue, 09 Feb 2021 08:43:16 +0100
python-cobra (0.19.0-1) unstable; urgency=medium
[ Andreas Tille ]
* Team upload.
* New upstream version
* importlib_resources is not packaged for Debian thus ignore the test that
needs this module
* pytest.mark.skip did not worked that way. :-(
* Really exclude tests requiring importlib_resources
[ Nilesh Patra ]
* Do not use python3-all (Closes: #972812)
- sbml only builds its python extension for the default python
* xfail test_show_versions which xpass during autopkgtest
* Adapt data location with new version
* Rename overrides
-- Nilesh Patra <npatra974@gmail.com> Thu, 05 Nov 2020 22:12:34 +0530
python-cobra (0.18.1-2) unstable; urgency=medium
* Exclude s390x from list of architectures since one test of the test
suite fails on this architecture and there are no resources to track
this down.
Closes: #961224
-- Andreas Tille <tille@debian.org> Sat, 08 Aug 2020 14:59:14 +0200
python-cobra (0.18.1-1) unstable; urgency=medium
* Team upload.
* New upstream version
* debhelper-compat 13 (routine-update)
-- Andreas Tille <tille@debian.org> Sat, 08 Aug 2020 12:04:31 +0200
python-cobra (0.18.0-3) unstable; urgency=medium
* Team upload
* Use strong Depends instead of Recommends for several dependent modules
Closes: #958538
-- Andreas Tille <tille@debian.org> Tue, 12 May 2020 08:20:18 +0200
python-cobra (0.18.0-2) unstable; urgency=medium
* Add missing Dependency from python3-sbml5
Closes: #958538
-- Andreas Tille <tille@debian.org> Sun, 10 May 2020 21:04:49 +0200
python-cobra (0.18.0-1) unstable; urgency=medium
* Team upload.
* Drop outdated TODO
* debhelper-compat 12
* Standards-Version: 4.5.0 (routine-update)
* python3-sbml is now python2-sbml5
* d/control:
- Build-Depends: python3-matplotlib
Closes: #955656
- Use nocheck
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* debian/copyright: use spaces rather than tabs to start continuation
lines.
* Use secure URI in Homepage field.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
* debian/tests/control: s/ADTTMP/AUTOPKGTEST_TMP/
-- Andreas Tille <tille@debian.org> Mon, 20 Apr 2020 19:11:22 +0200
python-cobra (0.14.2-2) unstable; urgency=medium
* Team upload.
* Set correct exit return for autopkgtest
Closes: #912586
* Remove unused or redundant test dependencies
-- Liubov Chuprikova <chuprikovalv@gmail.com> Sat, 16 Feb 2019 20:08:53 +0100
python-cobra (0.14.2-1) unstable; urgency=medium
* Team upload.
* Do not install __pycache__
* debhelper 12
* Standards-Version: 4.3.0
* rename debian/tests/control.autodep8 to debian/tests/control
* Enable python3-sbml
* Build-/Test-Depends: python3-simplejson
-- Andreas Tille <tille@debian.org> Mon, 04 Feb 2019 15:12:37 +0100
python-cobra (0.14.1-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Versioned Depends: python3-pipdeptree (>= 0.13.1)
(see https://github.com/opencobra/cobrapy/issues/780)
Closes: #916706
* Add missing Recommends and Test-Depends
-- Andreas Tille <tille@debian.org> Tue, 18 Dec 2018 09:42:44 +0100
python-cobra (0.13.4-2) unstable; urgency=medium
[ Matthias Klose ]
* Team upload
* Add python3-pytest-benchmark to the autopkg test dependencies.
Closes: #912574
[ Andreas Tille ]
* Secure URI in copyright format
* Remove trailing whitespace in debian/changelog
-- Andreas Tille <tille@debian.org> Thu, 01 Nov 2018 14:00:10 +0100
python-cobra (0.13.4-1) unstable; urgency=medium
* Team upload.
[ Afif Elghraoui ]
* New upstream version
Closes: #904709
* Update dependencies
* Refresh patch
* Drop obsolete patch
[ Andreas Tille ]
* Standards-Version: 4.2.1
* Point Vcs-fields to Salsa
* debhelper 11
* cme fix dpkg-control
* Build-Depends: python*-requests, python*-pip
* Drop failing test TestCobraFluxSampling.test_fixed_seed
* Rename debian/tests/control to control.autodep8
* Testsuite: autopkgtest-pkg-python
* Drop Python2 package since it has no reverse dependencies
(as well as autopkgtest of Python2 version)
* Build-Depends: python3-depinfo, python3-pipdeptree
* Drop failing test: test_show_versions (needs further investigation
with upstream)
* Silence lintian about wrong Python version of data file
-- Andreas Tille <tille@debian.org> Wed, 17 Oct 2018 21:31:48 +0200
python-cobra (0.5.9-1) unstable; urgency=medium
* New upstream release
* Refresh patch
-- Afif Elghraoui <afif@debian.org> Wed, 25 Jan 2017 01:22:48 -0800
python-cobra (0.5.6-1) unstable; urgency=medium
* Imported Upstream version 0.5.6
* Update packaging to accommodate change in test suite framework
- include a workaround for #846045 (in pytest-benchmark) to be able
to run tests without pytest-benchmark available.
* d/tests/Makefile: update test script to accommodate return code change
-- Afif Elghraoui <afif@debian.org> Tue, 29 Nov 2016 03:12:24 -0800
python-cobra (0.5.4-1) unstable; urgency=medium
* Imported Upstream version 0.5.4
* Update upstream contact
-- Afif Elghraoui <afif@debian.org> Mon, 07 Nov 2016 20:51:23 -0800
python-cobra (0.5.2-1) unstable; urgency=medium
* Drop patch applied upstream
* Imported Upstream version 0.5.2
* Update docs installation
* Remove unused lintian overrides
-- Afif Elghraoui <afif@debian.org> Fri, 21 Oct 2016 22:57:41 -0700
python-cobra (0.4.2~b1-1) unstable; urgency=medium
* Imported Upstream version 0.4.2~b1
* Refresh patches
* Use Make to drive autopkgtests and document some rationale
* Clean up d/control and d/rules
* Include jsonschema and pandas to run additional CI tests
-- Afif Elghraoui <afif@debian.org> Sun, 17 Jul 2016 16:43:42 -0700
python-cobra (0.4.1-2) unstable; urgency=medium
* Team upload.
* Make build reproducible.
- Ensure stable ordering for required dependencies.
* Bump Standards-Version.
-- Sascha Steinbiss <sascha@steinbiss.name> Wed, 01 Jun 2016 14:47:03 +0000
python-cobra (0.4.1-1) unstable; urgency=medium
* Imported Upstream version 0.4.1
* Refreshed patch
-- Afif Elghraoui <afif@debian.org> Thu, 24 Mar 2016 20:31:39 -0700
python-cobra (0.4.0+0-1) unstable; urgency=medium
* Imported Upstream version 0.4.0
* Add uversionmangle to d/watch
* Use encrypted protocols for VCS URLs
-- Afif Elghraoui <afif@ghraoui.name> Tue, 08 Mar 2016 22:04:56 -0800
python-cobra (0.4.0b7-1) unstable; urgency=medium
* Imported Upstream version 0.4.0b7
* Update standards version
* Run additional tests at build-time
* Clean up and fix autopkgtest
-- Afif Elghraoui <afif@ghraoui.name> Sat, 20 Feb 2016 01:05:24 -0800
python-cobra (0.4.0b6-1) unstable; urgency=medium
* Run autopkgtests from outside the source tree
* Imported Upstream version 0.4.0b6
-- Afif Elghraoui <afif@ghraoui.name> Mon, 21 Dec 2015 21:29:51 -0800
python-cobra (0.4.0b4-1) unstable; urgency=medium
* Imported Upstream version 0.4.0b4
-- Afif Elghraoui <afif@ghraoui.name> Sun, 13 Sep 2015 02:15:32 -0700
python-cobra (0.4.0b3-1) unstable; urgency=medium
* Imported Upstream version 0.4.0b3
* Removed patch that was applied upstream
* Adjusted autopkgtest commands
* Refreshed quilt patch
-- Afif Elghraoui <afif@ghraoui.name> Fri, 28 Aug 2015 22:27:50 -0700
python-cobra (0.4.0b2-1) unstable; urgency=medium
* Adjust package relationships as requested by upstream
* Imported Upstream version 0.4.0b2 (Closes: 794978)
* Require matching version of the data package
* Configured autopkgtests
* Allowed tests to run without python-jsonschema
* Added lintian overrides for python-cobra-data
-- Afif Elghraoui <afif@ghraoui.name> Tue, 04 Aug 2015 18:52:51 -0700
python-cobra (0.4.0b1-2) unstable; urgency=medium
* Add more recommended packages in d/control
* Add suggestion of jython for python-cobra
* Really remove jython files from python3-package.
Thanks to Aaron Ucko for the bug report (Closes: 792058)
-- Afif Elghraoui <afif@ghraoui.name> Fri, 10 Jul 2015 18:35:52 -0700
python-cobra (0.4.0b1-1) unstable; urgency=medium
* Update watch file to pick up alpha and beta releases
* Imported Upstream version 0.4.0b1
* Remove obsolete patches
* Remove copyright statements for files removed upstream
* Update d/copyright to reflect new upstream dual-licensing and correct
gpl3 mistake
* Refine dh_install overrides to exclude jython code from python3 package
* Add build-dependencies on python(3)-six
* Disable building of documentation until Sphinx 1.3 is available
-- Afif Elghraoui <afif@ghraoui.name> Thu, 09 July 2015 18:12:36 -0700
python-cobra (0.3.2-1) unstable; urgency=medium
* Initial release (Closes: #788224)
* Add patches to improve Python3 compatibility
* Specify copyright for the externally-contributed modules
* Exclude cobra/test/data/update_pickles.py
* Create package for data and documentation
* Use packaged versions of javascript libraries where available
-- Afif Elghraoui <afif@ghraoui.name> Tue, 09 Jun 2015 06:20:48 -0700