python-cogent (1.5.3-2) unstable; urgency=low * debian/rules: Add -f option to rm statements to not fail if files to be remove do not exist Closes: #710339 -- Andreas Tille Thu, 30 May 2013 13:02:05 +0200 python-cogent (1.5.3-1) unstable; urgency=low * New upstream * debian/control: use dh 9 * debian/control: set standard to 3.9.4 (no changes) * debian/rules: add get-orig-source target * debian/rules: remove some superfluous files [ Tim Booth ] * Added back python2 helper and invoked dh_numpy to sort deps * Split out docs into separate package * Added extra cleanup to dh_clean -- Thorsten Alteholz Sun, 16 May 2013 18:00:00 +0200 python-cogent (1.5.1-3) UNRELEASED; urgency=low * debian/upstream: Added citations -- Andreas Tille Mon, 07 May 2012 15:39:14 +0200 python-cogent (1.5.1-2) unstable; urgency=low * Explicitly added python-numpy as dependency to binary ... where is the dh_shlibdeps? Many thanks to Jakub (Closes: #640262). * Added build-dependency on cython after look in setup.py * Some further formatting in debian/control * Added -dbg package * Fiddled with debian/*.install to actually install the libraries and fill that -dbg package. * Added dependency to underscore.js -- Steffen Moeller Sun, 04 Sep 2011 10:49:49 +0200 python-cogent (1.5.1-1) unstable; urgency=low * New upstream version. * Reformatted debian/control description -- Steffen Moeller Sun, 21 Aug 2011 21:14:08 +0200 python-cogent (1.5-3) unstable; urgency=low * debian/control: - Remove Sri Girish Srinivasa Murthy from Uploaders - Standards-Version: 3.9.2 (no changes needed) - python-all-dev (>= 2.6) to be able to use dh_python2 * debhelper 8 (control+compat) * debian/rules: dh_python2 Finally closes: #596540 -- Andreas Tille Wed, 27 Apr 2011 09:16:52 +0200 python-cogent (1.5-2) unstable; urgency=low * debian/copyright: Clarified license of two single non-free files -> package can go to main * debian/control: - Added myself to uploaders - python-central -> python-support - Build-Depends: python-sphinx to create doc in HTML format - Depends: libjs-jquery to enable using Debian packaged version of this JS library * debian/rules: - Short dh syntax to simplyfy the following tasks - Build html doc from rst - avoid compressing used files * Removed README.Debian because the non-free issue is solved * debian/links: Link against Debian's jquery.js -- Andreas Tille Tue, 01 Mar 2011 11:30:18 +0100 python-cogent (1.5-1) unstable; urgency=low * Bumped standard to 3.9.1, no changes required. * New upstream version. - major additions to Cookbook - added AlleleFreqs attribute to ensembl Variation objects. - added getGeneByStableId method to genome objects. - added Introns attribute to Transcript objects and an Intron class. - added Mann-Whitney test and a Monte-Carlo version - exploratory and confirmatory period estimation techniques (suitable for symbolic and continuous data) - Information theoretic measures (AIC and BIC) added - drawing of trees with collapsed nodes - progress display indicator support for terminal and GUI apps - added parser for illumina HiSeq2000 and GAiix sequence files as cogent.parse.illumina_sequence.MinimalIlluminaSequenceParser. - added parser to FASTQ files, one of the output options for illumina's workflow, also added cookbook demo. - added functionality for parsing of SFF files without the Roche tools in cogent.parse.binary_sff - thousand fold performance improvement to nmds - >10-fold performance improvements to some Table operations -- Steffen Moeller Sat, 04 Dec 2010 22:30:35 +0100 python-cogent (1.4.1-1.2) unstable; urgency=low * Non-maintainer upload. * Mark package as auto-buildable -- Moritz Muehlenhoff Wed, 13 Oct 2010 20:56:27 +0200 python-cogent (1.4.1-1.1) unstable; urgency=low * Non-maintainer upload. * Replace build-dependency on python2.5-dev with python-all-dev. Closes: #596325. -- Matthias Klose Sun, 12 Sep 2010 15:18:44 +0200 python-cogent (1.4.1-1) unstable; urgency=low * Initial release (Closes: #587161) -- Sri Girish Srinivasa Murthy Sat, 24 Jul 2010 00:53:31 +0200