python-pbcore (2.1.2+dfsg-10) unstable; urgency=medium * Remove intersphinx Closes: #1090155 * d/rules: Fix removal of test remainings -- Andreas Tille Mon, 16 Dec 2024 18:22:11 +0100 python-pbcore (2.1.2+dfsg-9) unstable; urgency=medium * d/control: remove dependency on deprecated python3-pkg-resources. (Closes: #1083675) * d/patches/*: normalize dep3 headers. * d/salsa-ci.yml: disable i386 build. i386 build failure is not fatal on arch-all packages. -- Étienne Mollier Sun, 10 Nov 2024 15:33:33 +0100 python-pbcore (2.1.2+dfsg-8) unstable; urgency=medium * d/rules: remove nudge to use setuptools test. (Closes: #1080396) * d/rules; remove unknown files in Python module directory. * d/control: declare compliance to standards version 4.7.0. -- Étienne Mollier Tue, 03 Sep 2024 21:57:31 +0200 python-pbcore (2.1.2+dfsg-7) unstable; urgency=medium * Team upload. * d/tests/control: restrict tests to 64-bit architectures. -- Michael R. Crusoe Fri, 22 Mar 2024 18:05:46 +0100 python-pbcore (2.1.2+dfsg-6) unstable; urgency=medium * Team upload. * d/rules: combine the two dh_auto_clean overrides into one and use d/clean to simplify that. * d/control: add dh-sequence dependencies for the addons. -- Michael R. Crusoe Fri, 22 Mar 2024 17:59:15 +0100 python-pbcore (2.1.2+dfsg-5) unstable; urgency=medium * d/control: bring back support for all python3 versions. * d/NEWS: remove; affected version not part of maintained releases. * d/copyright: update copyright years. * d/control: depend on architecture all only python3 package. * d/rules: remove empty directory flagged by lintian. -- Étienne Mollier Sat, 07 Jan 2023 15:47:39 +0100 python-pbcore (2.1.2+dfsg-4) unstable; urgency=medium * Standards-Version: 4.6.2 (routine-update) * Fix AttributeError: module 'numpy' has no attribute 'float'. Closes: #1027211 -- Andreas Tille Thu, 29 Dec 2022 20:01:16 +0100 python-pbcore (2.1.2+dfsg-3) unstable; urgency=medium * enable-build-time-testing.patch: remove; cease enforcing nostests. * d/control: replace nose by pytest. (Closes: #1018551) * Standards-Version: 4.6.1 (routine-update) * d/control: add myself to uploaders. -- Étienne Mollier Sat, 03 Dec 2022 20:33:13 +0100 python-pbcore (2.1.2+dfsg-2) unstable; urgency=medium * Fix watch file * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) -- Andreas Tille Sat, 29 Jan 2022 08:10:54 +0100 python-pbcore (2.1.2+dfsg-1) unstable; urgency=medium [ Michael R. Crusoe ] * Team upload. * New upstream version * Remove trailing whitespace in debian/rules (routine-update) [ Andreas Tille ] * Attempt to enhance creation of documentation to address bug #919052 * abandon pyxb, use xmlschema for validation if installed [ Nilesh Patra ] * Fix creation of docs Closes: #919052 -- Andreas Tille Thu, 23 Dec 2021 17:14:59 +0100 python-pbcore (1.7.1+git20200430.a127b1e+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Trim trailing whitespace (routine-update). * d/rules: allow for repeated builds by fixing clean -- Steffen Moeller Tue, 05 May 2020 17:43:06 +0200 python-pbcore (1.7.1+git20200313.41ba394+dfsg-1) unstable; urgency=medium * Team upload. * New upstream version * Rules-Requires-Root: no (routine-update) * Cleaning generated doc/*.rst files * d/u/metadata: Added ref to bioconda -- Steffen Moeller Sat, 21 Mar 2020 19:54:46 +0100 python-pbcore (1.7.1+git20200206.d66cbbf+dfsg-1) unstable; urgency=medium [ Gianfranco Costamagna ] * Drop pyxb also from test depends (Closes: #950336) [ Andreas Tille ] * New upstream version * Add salsa-ci file (routine-update) -- Andreas Tille Tue, 25 Feb 2020 09:06:14 +0100 python-pbcore (1.7.1+git20200129.c55621e+dfsg-1) unstable; urgency=medium * Remove python3-pyxb from Build-Depends Closes: #950336 * New upstream version * Standards-Version: 4.5.0 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. -- Andreas Tille Fri, 31 Jan 2020 16:34:17 +0100 python-pbcore (1.7.1+git20191121.7947eb7+dfsg-3) unstable; urgency=medium * Build-Depends: s/pylint3/pylint/ Closes: #946426 -- Andreas Tille Mon, 09 Dec 2019 09:06:38 +0100 python-pbcore (1.7.1+git20191121.7947eb7+dfsg-2) unstable; urgency=medium * Re-upload for testing migration -- Andreas Tille Sat, 07 Dec 2019 09:37:21 +0100 python-pbcore (1.7.1+git20191121.7947eb7+dfsg-1) unstable; urgency=medium * Afif removed himself from Uploaders * Add myself to Uploaders * New upstream version Git checkout Drop Python2 support and switch to Python3 Closes: #938009 * debhelper-compat 12 * Standards-Version: 4.4.1 * (Build-)Depends: python3-biopython (>= 1.74) * Rewrite autopkgtest * Breaks/Provides/Replaces: python-pbcore (<= (1.7) -- Andreas Tille Thu, 05 Dec 2019 11:23:55 +0100 python-pbcore (1.6.5+dfsg-1) unstable; urgency=medium [ Andreas Tille ] * Team upload. * Recommends: python-h5py (its considered an "optional dependency") * Upstream is now tagging releases - adjust watch file * Standards-Version: 4.2.1 * Secure URI in copyright format * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/changelog * Build-Depends: s/python-sphinx/python3-sphinx/ [ Drew Parsons ] * add fix_numpy_1.16_9c065b7.patch applying upstream commit 9c065b724 to fix dtypes for build against numpy 1.16. Closes: #918212, #917670. * Standards-Version: 4.3.0 * debhelper compatibility level 12 -- Drew Parsons Thu, 10 Jan 2019 11:13:59 +0100 python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-2) unstable; urgency=medium * Team upload * Add test Depends: python-h5py -- Graham Inggs Wed, 27 Jun 2018 13:06:45 +0000 python-pbcore (1.5.0+git20180606.43fcd9d+dfsg-1) unstable; urgency=medium * Team upload [ Afif Elghraoui ] * New upstream version (git f3bcf3a) * Updated patches * Added tests dependency on python-coverage * d/control: use build profile declarations [ Andreas Tille ] * New upstream version Closes: #900485 * Relax test constraint which is rather a rounding issue * d/watch: mode=git * cme fix dpkg-control - Point Vcs-fields to Salsa - Standards-Version: 4.1.4 - Sequence of fields - Formatting * debhelper 11 * remove outdated X-Python-Version * d/rules: Drop get-orig-source target -- Andreas Tille Tue, 26 Jun 2018 08:13:42 +0200 python-pbcore (1.2.11+dfsg-1) unstable; urgency=medium * New upstream release (git 32b6883 from 2016-09-19) * Update patches -- Afif Elghraoui Thu, 26 Jan 2017 00:23:02 -0800 python-pbcore (1.2.10+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.2.10+dfsg * Drop patch applied upstream * Don't raise exception if pyxb version does not exactly match (Closes: #839346) * Bump Standards-Version to 3.9.8 -- Afif Elghraoui Sun, 09 Oct 2016 11:10:59 -0700 python-pbcore (1.2.9+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.2.9+dfsg * Refresh patches * Remove handling for pbdataset script * Add new tests dependency on python-pyxb * Add NEWS file to warn users about the missing pbdataset script * Make corrections to the pbopen manpage -- Afif Elghraoui Mon, 11 Apr 2016 22:58:38 -0700 python-pbcore (1.2.7+dfsg-2) unstable; urgency=medium * Fix compatibility with pysam 0.9.0 * Bump standards version * Use https for VCS URLs -- Afif Elghraoui Thu, 10 Mar 2016 22:46:31 -0800 python-pbcore (1.2.7+dfsg-1) unstable; urgency=medium * Revert "Set watch file to point to pypi rather than github" * Imported Upstream version 1.2.7+dfsg * Drop patch applied upstream * Refresh patches -- Afif Elghraoui Sun, 13 Dec 2015 17:18:26 -0800 python-pbcore (1.2.6+dfsg-1) unstable; urgency=medium * Set watch file to point to pypi rather than github * Imported Upstream version 1.2.6+dfsg * Refresh patches * Fix compatibility with pysam 0.8.4 (Closes: #805687) * Add license statement for a file added in-between releases -- Afif Elghraoui Fri, 27 Nov 2015 12:19:10 -0800 python-pbcore (1.2.4+dfsg-1) unstable; urgency=medium * Fix watch file after dropping the dfsg counting. * Imported Upstream version 1.2.4+dfsg * Drop patch to skip integration tests at build time (applied upstream) * Drop rename-dataset.py patch in favor of build-time substitution -- Afif Elghraoui Mon, 26 Oct 2015 21:56:40 -0700 python-pbcore (1.2.3+dfsg-1) unstable; urgency=medium * Imported Upstream version 1.2.3+dfsg * Add patch to skip tests if the necessary scripts can't be found * Install scripts to /usr/bin, but give them sensible names * Add dependency on python-pkg-resources for python-pbcore * Add manpage stubs directing users to richer documentation sources -- Afif Elghraoui Sun, 20 Sep 2015 01:18:26 -0700 python-pbcore (1.2.2+dfsg1-1) unstable; urgency=medium * Imported Upstream version 1.2.1+dfsg1 * Install upstream-provided convenience scripts * Refresh patches * Install upstream changelog and readme in main package (not doc package) * Enable build-time testing * Configure autopkgtests * Drop nonfunctional Python3 package and merge data package with main one -- Afif Elghraoui Mon, 03 Aug 2015 23:43:39 -0700 python-pbcore (1.0.0-1) experimental; urgency=low * Initial release (Closes: #787981) * Add material for autopkgtest * Use packaged javascript libraries for HTML documentation where available * Use dh pybuild rather than the upstream-provided Makefile * Use default documentation theme rather than upstream's with corporate logo * Provide python3 package * Prepare python-pbcore-data package * Prepare documentation package * Add autopkgtest for python3 package * Update uscan calls to append suffix to package name for next release -- Afif Elghraoui Sat, 06 Jun 2015 23:35:12 -0700