readseq (1-11) unstable; urgency=medium * debian/patches/buffer_overflow.patch: Fix buffer overflow (thanks to Michael Bienia for the patch) Closes: #733650 -- Andreas Tille Tue, 31 Dec 2013 15:38:41 +0100 readseq (1-10) unstable; urgency=low * debian/upstream: citation information * debian/control: - cme fix dpkg-control - debhelper 9 - canonical Vcs URLs * debian/README.source: removed because redundant * debian/patches/enable_tests.patch: Fix test target * debian/patches/hardening.patch: Propagate hardening options * debian/copyright: DEP5 * provide test after installing the package -- Andreas Tille Mon, 18 Nov 2013 14:22:50 +0100 readseq (1-9) unstable; urgency=low * Remove [Biology] from description * Standards-Version: 3.9.2 (no changes needed) * debian/source/format: 3.0 (quilt) * debian/get-orig-source: Make sure repackaging is binary reproducible * Fixed Vcs fields * Debhelper 8 (control+compat) * debian/rules: switch to short dh syntax * debian/patches/gcc-4.6_format-security.patch: Fix format-security issue Closes: #643465 * debian/dirs: Create dirs used by dh_auto_install -- Andreas Tille Fri, 28 Oct 2011 16:15:21 +0200 readseq (1-8) unstable; urgency=low [ Charles Plessy ] * DM-Upload-Allowed: Yes [ Andreas Tille ] * Added Vcs-Browser, Vcs-Svn * Standards-Version: 3.8.3 (added README.source) * Debhelper 7 * Switch to quilt * debian/patches/552830.patch: Patch from Ruben Molina to fix build problem (thanks to Ruben), changed one last remaining of getline myself Closes: #552830 -- Andreas Tille Thu, 26 Nov 2009 12:31:49 +0100 readseq (1-7) unstable; urgency=low * Group maintainance by Debian-Med packaging group * Build-Depends: debhelper (>= 5.0) * Standards-Version: 3.7.2 (no changes necessary) * Switched to dpatch, cdbs * Added get-orig-source target * Moved manpage to Debian directory * debian/control: Homepage tag -- Andreas Tille Sat, 17 Nov 2007 23:04:00 +0100 readseq (1-6) unstable; urgency=low * Fixed amd64 bug (segfaults when command line options given), thanks to a hint by the ncbi6 maintainer. Closes: #269643. -- Michael Schmitz Tue, 26 Oct 2004 18:12:15 +0100 readseq (1-5) unstable; urgency=low * Fixed bug in format detection that did result in readseq incorrectly claiming LinAll format files whose title begins with a number as Phylip format. Bug spotted locally and fixed by Gerhard Steger . -- Michael Schmitz Thu, 12 Jun 2003 17:55:15 +0100 readseq (1-4) unstable; urgency=low * New Maintainer (took over from Andreas Tille 'cuz readseq is actually in use at our site). * Added LinAll and Vienna RNA formats. -- Michael Schmitz Thu, 07 Nov 2002 16:55:05 +0100 readseq (1-3) unstable; urgency=low * Corrected spelling bug (Thanks to Matt Zimmerman ) closes: #125305 -- Andreas Tille Tue, 18 Dec 2001 12:03:25 +0100 readseq (1-2) unstable; urgency=low * compile explicitely with -lncbiid1 and -lnetcli according to a hint of ncbi-tools6 maintainer Aaron M. Ucko (Thanks Aaron) closes: #119586 -- Andreas Tille Thu, 15 Nov 2001 17:01:18 +0100 readseq (1-1) unstable; urgency=low * New Maintainer closes: #100257 * New upstream release * Applied Bugfix 20Apr93 * Applied fixes from former versions * Added debian/translate.patch to the sources for those brave people who want to test it (please report if I should apply it to the binary) * Replaced a gets call by fgets to avoid buffer overflow * increased p.namewidth from 8 to 10 in ureadseq.h because Arb need this * Added patch by o. strunk (ARB) to allow numbers in genbank sequences to ureadseq.c * Added an undocumented ARB patch which seems to fix a problem with older Phylip versions. * Added a further patch from ARB. Patches can be undone by just undefining ARB. * I did not apply the patch of the ARB version which wrapped isdigit by by rs_isdigit in readseq.c. * Declared in README.Debian that this is the packaged version 1 of readseq by certain reasons. Because I really need this version I close the "new version available" bug. If somebody really wants the new version please file an RFP bug against wnpp. Make sure to read /usr/share/doc/readseq/README.Debian before. closes: #43372 * Added URL to the package description because I consider this as "good style" to have an upstream link without installing the package. * Install Readseq.help as NCBI Vibrant Toolkit compatible helpfile instead of just putting it just into /usr/share/doc/readseq. -- Andreas Tille Mon, 5 Nov 2001 08:43:12 +0100 readseq (0.0-4) unstable; urgency=low * Maintainer set to Debian QA Group . -- Adrian Bunk Fri, 24 Aug 2001 23:51:22 +0200 readseq (0.0-3) unstable; urgency=low * Adopted by new maintainer; closes: #92801 * Updated to latest standards version and added Build-Depends; closes: #84541, #91036, #91640 * Corrected doc path in Makefile and manpage. * Moved from section misc to science. -- Dr. Guenter Bechly Thu, 19 Apr 2001 20:05:45 +0200 readseq (0.0-2) unstable; urgency=low * Manual page. Closes #33772 * Now linked with the NCBI libraries an therefore depends on ncbi-tools. -- Stephane Bortzmeyer Sat, 6 Mar 1999 22:44:04 +0100 readseq (0.0-1) unstable; urgency=low * Initial Release. -- Stephane Bortzmeyer Fri, 5 Feb 1999 16:58:28 +0100