Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: bio Source: http://www.bioruby.org/ Files: * Copyright: 2000-2013 Toshiaki Katayama 2002-2013 Naohisa Goto 2000-2008 Mitsuteru C. Nakao 2000-2008 Jan Aerts 2000-2006 Yoshinori K. Okuji 2001-2005 Shuichi Kawashima 2002 Hiroshi Suga , 2003 Masumi Itoh 2003-2005 Natsuhiro Ichinose 2004-2006 Alex Gutteridge 2004-2006 Daniel Amelang 2005 Masashi Fujita , 2005-2006 Shuji SHIGENOBU 2005-2007 Midwinter Laboratories, LLC (http://midwinterlabs.com) 2006-2007 Jeffrey Blakeslee and John Conery University of Oregon 2006 Christian M Zmasek 2006-2008 Ryan Raaum 2007 Center for Biomedical Research Informatics, University of Minnesota 2008 Raoul Jean Pierre Bonnal 2008 Adam Kraut 2008 Michael D. Barton 2008-2010 Pjotr Prins 2009 Diana Jaunzeikare 2009 Anthony Underwood 2009-2010 Kozo Nishida 2011 Tomoaki NISHIYAMA License: GPL-2 or Ruby BioRuby is copyrighted free software by Toshiaki Katayama . You can redistribute it and/or modify it under either the terms of the GPL version 2 (see the file GPL), or the conditions below. Files: setup.rb Copyright: 2000-2006 Minero Aoki License: LGPL-2.1 Files: sample/any2fasta.rb Copyright: 2006 Pjotr Prins License: GPL-2+ Files: sample/biofetch.rb: Copyright: 2002-2004 KATAYAMA Toshiaki License: GPL-2+ Files: sample/enzymes.rb: Copyright: 2006 Pjotr Prins 2006 Trevor Wennblom License: GPL-2+ Files: sample/fasta2tab.rb sample/fsplit.rb sample/gb2tab.rb sample/genes2nuc.rb sample/genes2pep.rb sample/genes2tab.rb sample/genome2tab.rb sample/gt2fasta.rb sample/ssearch2tab.rb sample/tfastx2tab.rb sample/vs-genes.rb Copyright: 2001 KATAYAMA Toshiaki License: GPL-2+ Files: sample/fastagrep.rb sample/fastasort.rb sample/na2aa.rb Copyright: 2008 KATAYAMA Toshiaki 2008 Pjotr Prins License: GPL-2+ Files: sample/gb2fasta.rb Copyright: 2001 KATAYAMA Toshiaki 2002 Yoshinori K. Okuji License: GPL-2+ Files: sample/gbtab2mysql.rb sample/genome2rb.rb sample/pmfetch.rb sample/pmsearch.rb Copyright: 2002 KATAYAMA Toshiaki License: GPL-2+ Files: sample/tdiary.rb Copyright: 2003 KATAYAMA Toshiaki 2003 Mitsuteru C. Nakao 2003 Itoshi NIKAIDO 2003 Takeya KASUKAWA License: GPL-2+ Files: test/data/uniprot/p53_human.uniprot Copyright: none These files are marked to be copyrighted by the UniProt Consortium, but this applies to the UniProt database as a whole, not to the individual records. License: not-the-CC-BY-ND-3.0 Despite the following statement: . Copyrighted by the UniProt Consortium, see http://www.uniprot.org/terms Distributed under the Creative Commons Attribution-NoDerivs License . The above files, as individual records, are not copyrighted. The statement is for the UniProt as a whole. Files: debian/* Copyright: Copyright 2011 Lucas Nussbaum License: GPL-2 or Ruby License: GPL-2 This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this package; if not, write to the Free Software Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-licenses/GPL-2'. License: GPL-2+ This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 2 of the License, or (at your option) any later version. . This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details. . You should have received a copy of the GNU General Public License along with this program. If not, see . . On Debian systems, the full text of the GNU General Public License version 2 can be found in the file `/usr/share/common-licenses/GPL-2'. License: LGPL-2.1 This library is free software; you can redistribute it and/or modify it under the terms of the GNU Lesser General Public License as published by the Free Software Foundation; either version 2.1 of the License, or (at your option) any later version. . This library is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License for more details. . You should have received a copy of the GNU Lesser General Public License along with this library; if not, write to the Free Software Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301 USA . On Debian systems, the full text of the GNU Lesser General Public License version 2.1 can be found in the file `/usr/share/common-licenses/LGPL-2.1'. License: Ruby BioRuby is copyrighted free software by Toshiaki Katayama . You can redistribute it and/or modify it under either the terms of the GPL version 2 (see the file GPL), or the conditions below: . 1. You may make and give away verbatim copies of the source form of the software without restriction, provided that you duplicate all of the original copyright notices and associated disclaimers. . 2. You may modify your copy of the software in any way, provided that you do at least ONE of the following: . a) place your modifications in the Public Domain or otherwise make them Freely Available, such as by posting said modifications to Usenet or an equivalent medium, or by allowing the author to include your modifications in the software. . b) use the modified software only within your corporation or organization. . c) give non-standard binaries non-standard names, with instructions on where to get the original software distribution. . d) make other distribution arrangements with the author. . 3. You may distribute the software in object code or binary form, provided that you do at least ONE of the following: . a) distribute the binaries and library files of the software, together with instructions (in the manual page or equivalent) on where to get the original distribution. . b) accompany the distribution with the machine-readable source of the software. . c) give non-standard binaries non-standard names, with instructions on where to get the original software distribution. . d) make other distribution arrangements with the author. . 4. You may modify and include the part of the software into any other software (possibly commercial). But some files in the distribution are not written by the author, so that they are not under these terms. . For the list of those files and their copying conditions, see the file LEGAL. . 5. The scripts and library files supplied as input to or produced as output from the software do not automatically fall under the copyright of the software, but belong to whomever generated them, and may be sold commercially, and may be aggregated with this software. . 6. THIS SOFTWARE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.