samtools-legacy (0.1.19+dfsg-6) unstable; urgency=medium
* Team upload.
* Revert: Add missing build dependency on dh addon.
* Disable LTO
Closes: #1015655
* d/watch: Provide sensible upstream tarball name
* Standards-Version: 4.6.1 (routine-update)
* Remove trailing whitespace in debian/rules (routine-update)
-- Andreas Tille <tille@debian.org> Mon, 12 Dec 2022 17:30:33 +0100
samtools-legacy (0.1.19+dfsg-5) unstable; urgency=medium
* Team upload.
* Better patch by John Marshall for "format not a string"
* Really fix watch file
* Add missing build dependency on dh addon.
-- Andreas Tille <tille@debian.org> Tue, 18 Jan 2022 18:49:14 +0100
samtools-legacy (0.1.19+dfsg-4) unstable; urgency=medium
* Team upload.
* Fix watchfile to detect new versions on github
* Standards-Version: 4.6.0 (routine-update)
* Fix error: format not a string literal and no format arguments
-- Andreas Tille <tille@debian.org> Fri, 01 Oct 2021 17:04:40 +0200
samtools-legacy (0.1.19+dfsg-3) UNRELEASED; urgency=medium
* Re-add non-essential changes
* Add patch to add in hardening options
-- Nilesh Patra <nilesh@debian.org> Sun, 25 Jul 2021 20:47:46 +0530
samtools-legacy (0.1.19+dfsg-2) unstable; urgency=medium
* Team Upload.
* Add Depends on zlib1g-dev
* Add autopkgtests
-- Nilesh Patra <nilesh@debian.org> Sun, 25 Jul 2021 20:41:17 +0530
samtools-legacy (0.1.19+dfsg-1) unstable; urgency=medium
* Team upload.
* Drop debian/gbp.conf after creating separate repository
* Move packaging to separate repository samtools-legacy
* Drop win32 binaries from upstream source tarball
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 13 (routine-update)
* Remove trailing whitespace in debian/changelog (routine-update)
* Remove trailing whitespace in debian/copyright (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Use secure URI in Homepage field.
* Set upstream metadata fields: Bug-Database, Bug-Submit, Repository,
Repository-Browse.
-- Andreas Tille <tille@debian.org> Mon, 16 Nov 2020 18:50:39 +0100
samtools-legacy (0.1.19-4) unstable; urgency=medium
* Team upload.
* Vcs-Browser points to correct branch
* Standards-Version: 4.1.5
* Make sure it is build with -fPIC
Closes: #904735
-- Andreas Tille <tille@debian.org> Tue, 31 Jul 2018 09:50:13 +0200
samtools-legacy (0.1.19-3) unstable; urgency=medium
* Team upload.
* Switch from cdbs to dh
* Add watch file
* Cleanup debian/upstream/metadata
* cme fix dpkg-control
- Point VCS fields to Salsa
- Standards-Version: 4.1.4
- Fix spacing in short description
* debhelper 11
* Fix Homepage
* Remove redundant information debian/reference
-- Andreas Tille <tille@debian.org> Tue, 03 Jul 2018 14:19:56 +0200
samtools-legacy (0.1.19-2) unstable; urgency=medium
1bb181e Build libbam-dev from version 0.1.19 in a “legacy” source package.
-- Charles Plessy <plessy@debian.org> Tue, 16 Sep 2014 20:03:23 +0900
samtools (0.1.19-1) unstable; urgency=low
cb9bd50 Imported https://github.com/samtools/samtools/archive/0.1.19.tar.gz
1e6d442 new tools ace2sam, bamcheck, plot-bamcheck, r2plot.lua, vcfutils.lua.
2f2d5c5 debian/copyright: collapsed copyright notices from main holders.
e194f9e Removed fix_float_tag.patch, corrected upstream.
9c0e543 Refreshed patches.
3e7e0ec Renamed no-pileup-tests.patch fix_example_makefile.patch.
8d8550e example/Makefile: pass -lpthread when compiling calDepth.
fc32243 harden by concatenating Debian's LDFLAGS and CPPFLAGS in CFLAGS.
6f75b48 debian/control: normalised with cme.
e13bb5e debian/control: normalised VCS URLs.
a1b1b00 debian/control: deleted DM-Upload-Allowed field.
ddcd54e Use NEWS as upstream changelog.
81ad760 Conforms to Policy version 3.9.4.
-- Charles Plessy <plessy@debian.org> Sat, 30 Mar 2013 17:31:47 +0900
samtools (0.1.18-4) unstable; urgency=low
[Charles Plessy]
* debian/copyright: Normalised with config-model
* added bash completion
* Build-depend on Debhelper 9
* Pass build flaggs set by dpkg-buildflags via Debhelper
* Moved DOI and PubMed to the Reference namespace
* Do not compress the example binary alignment file
* Mention ‘SAMtools’ in libbam-dev's description
[Andreas Tille]
* debian/upstream: replaced BibTeX entry
[Dominique Belhachemi]
* added patch to fix float tag bug (upstream bug 71)
-- Dominique Belhachemi <domibel@debian.org> Fri, 21 Dec 2012 12:09:18 -0500
samtools (0.1.18-3) unstable; urgency=low
* upload 0.1.18-2 closed the wrong bug, correction:
* added patch to fix segfault in mpileup (Closes: #653042)
* added patch to fix coverage cap (Closes: #671524)
-- Dominique Belhachemi <domibel@debian.org> Fri, 27 Jul 2012 11:11:41 -0400
samtools (0.1.18-2) unstable; urgency=low
* added patch to fix segfault in mpileup (Closes: #544976)
* added patch to fix coverage cap (Closes: #671524)
-- Dominique Belhachemi <domibel@debian.org> Thu, 26 Jul 2012 18:30:48 -0400
samtools (0.1.18-1) unstable; urgency=low
[b990d9d3] New upstream release.
[d59366b9] Updated copyright statements.
[aa08abe5] Compress binary packages with xz.
[9a36c994] Added a DEP 3 header to debian/patches/no-pileup-tests.patch.
-- Charles Plessy <plessy@debian.org> Tue, 06 Sep 2011 16:52:04 +0900
samtools (0.1.17-1) unstable; urgency=low
* New upstream release 0.1.17 (6 July, 2011).
* bcftools.1 and samtools.1 merged (debian/rules, debian/samtools.manpages).
* Patched the example makefile to not use samtools pileup, deprecated.
(debian/control, debian/rules, debian/patches/series,
debian/patches/no-pileup-tests.patch)
-- Charles Plessy <plessy@debian.org> Mon, 11 Jul 2011 21:04:30 +0900
samtools (0.1.16-1) unstable; urgency=low
* New upstream release, implementing SAM Spec v1.4.
* Distribute sam.h and the other headers in /usr/include/samtools.
Closes: #625622, #626044, LP: #690997.
-- Charles Plessy <plessy@debian.org> Thu, 19 May 2011 13:24:25 +0900
samtools (0.1.15-1) unstable; urgency=low
* New upstream release.
* Incremented Standards-Version to reflect conformance with Policy 3.9.2
(debian/control, no changes needed).
* debian/watch directly interrogates and downloads froms SourceForge.
-- Charles Plessy <plessy@debian.org> Tue, 12 Apr 2011 19:44:41 +0900
samtools (0.1.14-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Tue, 29 Mar 2011 13:13:54 +0900
samtools (0.1.13-1) unstable; urgency=low
* New upstream release:
- backward incompatible with VCF/BCF generated by samtools older
than r921 inclusive (0.1.12a is r862);
- buildable with with ld --as-needed (Closes: #606004);
- the helper tool bcf-fix.pl was removed.
* Install the manual page of bcftools (debian/rules,
debian/samtools.manpages). Closes: #616025.
-- Charles Plessy <plessy@debian.org> Wed, 02 Mar 2011 13:54:34 +0900
samtools (0.1.12a-1) unstable; urgency=low
* New upstream release.
* Use bzip2 compression for the binary packages (debian/rules).
* Incremented debhelper compatibility level to 8, in case ‘--‘ is not
available in earlier versions (debian/compat, debian/control).
-- Charles Plessy <plessy@debian.org> Fri, 03 Dec 2010 13:32:21 +0900
samtools (0.1.10-1) unstable; urgency=low
* New upstream release.
-- Charles Plessy <plessy@debian.org> Wed, 17 Nov 2010 20:32:40 +0900
samtools (0.1.9-1) unstable; urgency=low
* New upstream release, and new program: bcftools.
* debian/rules, debian/samtools.install: install bcftools, its manpage,
and bcf-fix.pl and vcfutils.pl.
* debian/samtools.examples, debian/rules: install and clean new examples.
* Incremented Standards-Version to reflect conformance with Policy 3.9.1
(debian/control, no changes needed).
* Updated and reformatted debian/copyright according to latest DEP-5 draft.
-- Charles Plessy <plessy@debian.org> Mon, 01 Nov 2010 20:06:32 +0900
samtools (0.1.8-1) unstable; urgency=low
* New upstream release.
* Updated the VCS fields to the current Git repository (debian/control).
* Install python scripts in usr/share/samtools, and suggest python
(debian/samtools.install, debian/rules, debian/control).
* Incremented Standards-Version to reflect conformance with Policy 3.9.0
(debian/control, no changes needed).
* Added notes on how the package is tested (debian/README.Debian).
-- Charles Plessy <plessy@debian.org> Wed, 14 Jul 2010 14:08:59 +0900
samtools (0.1.7a~dfsg-1) unstable; urgency=low
* New upstream release: new script sam2vcf.pl, and many other changes.
* Package converted to the format ‘3.0 (quilt)’ (debian/source/format).
* Wrote a manual page for razip (debian/razip.1).
* Better clean the example directory to make the source package
buildable twice in a row (debian/rules).
-- Charles Plessy <plessy@debian.org> Tue, 17 Nov 2009 21:38:24 +0900
samtools (0.1.6~dfsg-1) unstable; urgency=low
* New upstream release.
* Upstream sources repackaged to remove the win32 directory:
- The removal was done with git-import-orig in a parallel Git repository,
and the corresponding debian/gbp.conf file was added to this package.
- Mangled the ~dfsg string of the Debian version in debian/watch.
- Added a debian/README.source file and explanations in debian/copyright.
-- Charles Plessy <plessy@debian.org> Mon, 14 Sep 2009 21:58:36 +0900
samtools (0.1.5c-2) unstable; urgency=low
* Rebuilt with -fPIC (debian/rules, README.Debian).
* Small corrections to the description from upstream (debian/changelog).
* Incremented Standards-Version to reflect conformance with Policy 3.8.3
(no changes needed).
-- Charles Plessy <plessy@debian.org> Thu, 03 Sep 2009 19:29:40 +0900
samtools (0.1.5c-1) unstable; urgency=low
* Initial release (Closes: #540453)
-- Charles Plessy <plessy@debian.org> Sun, 16 Aug 2009 14:38:20 +0900