samtools (1.3-1) unstable; urgency=medium Samtools 1.3 introduces various changes to the command line tools. Most importantly, the legacy syntax for 'samtools sort' has been dropped, and the 'bamshuf' tool has been renamed to 'collate'. Please see the full upstream change log at: https://github.com/samtools/samtools/releases/tag/1.3 Note that scripts and users can still use "samtools bamshuf ...". The old name has not been removed, for obvious compatibility reasons -- Sascha Steinbiss Fri, 05 Feb 2016 08:26:05 +0000