samtools (1.3-1) unstable; urgency=medium Samtools 1.3 introduces various changes to the command line tools. Most importantly, the legacy syntax for 'samtools sort' has been dropped, and the 'bamshuf' tool has been renamed to 'collate'. Please see the full upstream change log at: https://github.com/samtools/samtools/releases/tag/1.3 -- Sascha Steinbiss Fri, 05 Feb 2016 08:26:05 +0000