snippy for Debian
=================

From README.md

* If you want to mask certain regions of the genome, you can provide a BED file
  with the `--mask` parameter. Any SNPs in those regions will be excluded. This
  is common for genomes like *M.tuberculosis* where pesky repetitive PE/PPE/PGRS
  genes cause false positives, or masking phage regions. A `--mask` bed file
  for *M.tb* is provided with Snippy in the `etc/Mtb_NC_000962.3_mask.bed`
  folder. It is derived from the XLSX file from https://gph.niid.go.jp/tgs-tb/

This example mask file is provided in /usr/share/doc/snippy/etc.

 -- Andreas Tille <tille@debian.org>  Tue, 01 Nov 2022 10:07:59 +0100