Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: SPAdes
Upstream-Contact: spades.support@bioinf.spbau.ru
Source: https://github.com/ablab/spades
Files-Excluded:
**/bamtools
**/nlopt
**/ssw
ext/include/boost
ext/include/cuckoo
ext/include/llvm/Support/ConvertUTF.h
ext/include/parallel_hashmap
ext/include/samtools/misc/ace2sam
ext/include/samtools/misc/maq2sam-long
ext/include/samtools/misc/maq2sam-short
ext/include/samtools/misc/md5fa
ext/include/samtools/misc/md5sum-lite
ext/include/samtools/misc/wgsim
ext/src/samtools/misc/ace2sam
ext/src/samtools/misc/maq2sam-long
ext/src/samtools/misc/maq2sam-short
ext/src/samtools/misc/md5fa
ext/src/samtools/misc/md5sum-lite
ext/src/samtools/misc/wgsim
ext/include/xxh
ext/src/googletest
ext/src/llvm/ConvertUTF.cpp
ext/src/ncbi
ext/src/python_libs
ext/src/spoa
src/tools/webvis
.gitignore
Files: *
Copyright: 2023-2024, SPAdes team
2015-2022 Saint Petersburg State University
2011-2014 Saint Petersburg Academic University
License: GPL-2
Files: ext/include/blaze/*
Copyright: 2012-2020 Klaus Iglberger
License: BSD-3-clause
Files: ext/include/boomphf/BooPHF.h
Copyright: 2015 Guillaume Rizk
License: Expat
Comment: MIT licensed as part of BBHash (https://github.com/rizkg/BBHash)
Files: ext/include/bwa/bntseq.h
ext/include/bwa/bwt.h
ext/include/bwa/utils.h
Copyright: 2008-2010 Genome Research Ltd (GRL).
License: Expat
Files: ext/include/clipp/*
Copyright: 2017-2018 André Müller <foss@andremueller-online.de>
License: Expat
Files: ext/include/cppformat/*
ext/src/cppformat/*
Copyright: 2012-2014 Victor Zverovich
License: BSD-2-clause
Files: ext/include/csv/*
Copyright: 2012-2015 Ben Strasser <code@ben-strasser.net>
License: BSD-3-clause
Files: ext/include/debug_assert/*
Copyright: 2016-2018 Jonathan Müller <jonathanmueller.dev@gmail.com>
License: Zlib
Files: ext/include/folly/*
Copyright: Meta Platforms, Inc. and affiliates.
License: Apache-2.0
Files: ext/include/kseq/*
Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat
Files: ext/include/llvm/*
ext/src/llvm/*
Copyright: 2003-2015 University of Illinois at Urbana-Champaign.
License: UoI-NCSA
Files: ext/include/llvm/Support/MD5.h
Copyright: 2001 Alexander Peslyak
License: public-domain
Files: ext/include/pdqsort/*
Copyright: 2015-2021 Orson Peters <orsonpeters@gmail.com>
License: Zlib
Files: ext/include/samtools/*
Copyright: 2008-2009 Genome Research Ltd.
License: Expat
Files: ext/include/samtools/bam.h
ext/include/samtools/faidx.h
ext/include/samtools/ksort.h
Copyright: 2008-2010 Genome Research Ltd (GRL).
License: Expat
Files: ext/include/samtools/bcftools/bcf.h
Copyright: 2010 Broad Institute
License: Expat
Files: ext/include/samtools/bcftools/kmin.c
ext/include/samtools/bcftools/kmin.h
Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat
Files: ext/include/samtools/bgzf.h
Copyright: Massachusetts Institute of Technology
2008, Broad Institute
License: Expat
Files: ext/include/samtools/kaln.h
ext/include/samtools/kprobaln.h
ext/include/samtools/misc/ace2sam.c
Copyright: 2003-2011 Heng Li <lh3@live.co.uk>
License: Expat
Files: ext/include/samtools/khash.h
ext/include/samtools/kseq.h
ext/include/samtools/kstring.h
Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat
Files: ext/include/samtools/misc/export2sam.pl
Copyright: 2010 Illumina, Inc.
2008-2009 Genome Research Ltd.
License: Expat
Files: ext/include/samtools/misc/md5.c
Copyright: 1995 Colin Plumb
License: public-domain
Files: ext/include/samtools/misc/wgsim.c
Copyright: 2008-2010 Genome Research Ltd (GRL).
License: Expat
Files: ext/include/samtools/razf.h
Copyright: 2008 ruanjue@gmail.com>, Heng Li <lh3@sanger.ac.uk>
License: BSD-2-clause
Files: ext/include/samtools/win32/zconf.h
Copyright: 1995-2005 Jean-loup Gailly.
License: Zlib
Files: ext/include/samtools/win32/zlib.h
Copyright: 1995-2022 Jean-loup Gailly and Mark Adler
License: Zlib
Files: ext/include/sse2neon/*
Copyright: John W. Ratcliff <jratcliffscarab@gmail.com>, Brandon Rowlett <browlett@nvidia.com>, Ken Fast <kfast@gdeb.com>, Eric van Beurden <evanbeurden@nvidia.com>, Alexander Potylitsin <apotylitsin@nvidia.com>, Hasindu Gamaarachchi <hasindu2008@gmail.com>, Jim Huang <jserv@biilabs.io>, Mark Cheng <marktwtn@biilabs.io>, Malcolm James MacLeod <malcolm@gulden.com>, Devin Hussey (easyaspi314) <husseydevin@gmail.com>, Sebastian Pop <spop@amazon.com>, Developer Ecosystem Engineering <DeveloperEcosystemEngineering@apple.com>, Danila Kutenin <danilak@google.com>, François Turban (JishinMaster) <francois.turban@gmail.com>, Pei-Hsuan Hung <afcidk@gmail.com>, Yang-Hao Yuan <yanghau@biilabs.io>, Syoyo Fujita <syoyo@lighttransport.com>, Brecht Van Lommel <brecht@blender.org>
License: Expat
Files: ext/include/teamcity_gtest/*
Copyright: 2015 Paul Shmakov
License: Apache-2.0
Files: ext/include/teamcity_gtest/teamcity_messages.h
Copyright: 2011 JetBrains s.r.o.
License: Apache-2.0
Files: ext/include/threadpool/*
Copyright: 2018 Loic Reyreaud
License: Expat
Files: ext/include/tsl/*
Copyright: 2017 Thibaut Goetghebuer-Planchon <tessil@gmx.com>
License: Expat
Files: ext/src/bwa/CMakeLists.txt
Copyright: 2016, 2017, 2019, Saint Petersburg State University
License: Apache-2.0
Files: ext/src/bwa/bntseq.c
ext/src/bwa/bwt.c
ext/src/bwa/bwtindex.c
ext/src/bwa/utils.c
Copyright: 2008-2010 Genome Research Ltd (GRL).
License: Expat
Files: ext/src/bwa/is.c
Copyright: 2003-2008 Yuta Mori
License: Expat
Files: ext/src/bwa/kbtree.h
Copyright: 1997-2001 John-Mark Gurney.
License: BSD-2-clause
Files: ext/src/bwa/khash.h
ext/src/bwa/kseq.h
ext/src/bwa/ksort.h
ext/src/bwa/ksw.c
ext/src/bwa/kvec.h
Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat
Files: ext/src/easel/*
Copyright: 2015-2022 President and Fellows of Harvard College
2000-2022 Howard Hughes Medical Institute
1995-2006 Washington University School of Medicine
1992-1995 MRC Laboratory of Molecular Biology, UK
1990-2022 Sean R. Eddy
License: BSD-2-clause
Files: ext/src/easel/esl_neon.c
ext/src/easel/esl_sse.c
ext/src/easel/esl_vmx.c
Copyright: 2007 Julien Pommier
1992 Stephen Moshier
License: Zlib
Files: ext/src/easel/esl_rand64.c
Copyright: 2004 Makoto Matsumoto and Takuji Nishimura.
2016 Kevin Lawler. Released under ISC License.
License: ISC
Files: ext/src/easel/esl_stats.h
Copyright: Sun Microsystems
1993 Sun Microsystems, Inc.
License: SUN
Files: ext/src/easel/esl_stopwatch.c
Copyright: 2012 David Robert Nadeau, http://NadeauSoftware.com
License: CC-BY-3.0
Files: ext/src/hmmer/*
Copyright: 2015-2016 President and Fellows of Harvard College
2000-2016 Howard Hughes Medical Institute
1992-2016 Sean R. Eddy
1992-2004 Washington University School of Medicine
1992-1994 MRC Laboratory of Molecular Biology
License: BSD-3-clause
Files: ext/src/hmmer/libdivsufsort/*
Copyright: 2003-2008 Yuta Mori
License: Expat or X11
Files: ext/src/hmmer/libdivsufsort/COPYING
ext/src/hmmer/libdivsufsort/divsufsort.c
ext/src/hmmer/libdivsufsort/divsufsort.h.in
Copyright: 2003-2008 Yuta Mori
License: Expat
Files: ext/src/lexy/*
Copyright: 2020-2024, Jonathan Müller and lexy contributors
License: BSL-1.0
Files: ext/src/llvm/MD5.cpp
Copyright: 2001 Alexander Peslyak
License: public-domain
Files: ext/src/llvm/regcomp.c
ext/src/llvm/regengine.inc
ext/src/llvm/regerror.c
ext/src/llvm/regex2.h
ext/src/llvm/regex_impl.h
ext/src/llvm/regexec.c
ext/src/llvm/regfree.c
ext/src/llvm/regutils.h
Copyright: 1992-1994 The Regents of the University of California.
1992-1994 Henry Spencer.
License: BSD-3-clause
Files: ext/src/llvm/regstrlcpy.c
Copyright: 1998 Todd C. Miller <Todd.Miller@courtesan.com>
License: ISC
Files: ext/src/mimalloc/*
Copyright: 2018-2021 Microsoft Corporation, Daan Leijen
License: Expat
Files: ext/src/mimalloc/include/*
Copyright: 2018-2022 Microsoft Research, Daan Leijen
License: Expat
Files: ext/src/mimalloc/src/*
Copyright: 2018-2022 Microsoft Research, Daan Leijen
License: Expat
Files: ext/src/samtools/*
Copyright: 2008-2009 Genome Research Ltd.
License: Expat
Files: ext/src/samtools/bam.h
ext/src/samtools/faidx.h
ext/src/samtools/knetfile.c
ext/src/samtools/ksort.h
Copyright: 2008-2010 Genome Research Ltd (GRL).
License: Expat
Files: ext/src/samtools/bam_cat.c
Copyright: 2010 Illumina, Inc.
2008-2009 Genome Research Ltd.
License: Expat
Files: ext/src/samtools/bcftools/bcf.h
Copyright: 2010 Broad Institute
License: Expat
Files: ext/src/samtools/bcftools/kmin.c
ext/src/samtools/bcftools/kmin.h
Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat
Files: ext/src/samtools/bgzf.c
ext/src/samtools/bgzf.h
ext/src/samtools/bgzip.c
Copyright: Massachusetts Institute of Technology
2008, Broad Institute
License: Expat
Files: ext/src/samtools/kaln.c
ext/src/samtools/kaln.h
ext/src/samtools/kprobaln.c
ext/src/samtools/kprobaln.h
Copyright: 2003-2011 Heng Li <lh3@live.co.uk>
License: Expat
Files: ext/src/samtools/khash.h
ext/src/samtools/kseq.h
ext/src/samtools/kstring.h
Copyright: 2008-2011 Attractive Chaos <attractor@live.co.uk>
License: Expat
Files: ext/src/samtools/misc/CMakeLists.txt
Copyright: 2010 Derek Barnett
License: Expat
Files: ext/src/samtools/misc/ace2sam.c
Copyright: 2003-2011 Heng Li <lh3@live.co.uk>
License: Expat
Files: ext/src/samtools/misc/export2sam.pl
Copyright: 2010 Illumina, Inc.
2008-2009 Genome Research Ltd.
License: Expat
Files: ext/src/samtools/misc/md5.c
Copyright: 1993 Colin Plumb
License: public-domain
Files: ext/src/samtools/misc/wgsim.c
Copyright: 2008-2010 Genome Research Ltd (GRL).
License: Expat
Files: ext/src/samtools/razf.c
ext/src/samtools/razf.h
Copyright: 2008 ruanjue@gmail.com>, Heng Li <lh3@sanger.ac.uk>
License: BSD-2-clause
Files: ext/src/samtools/win32/zconf.h
Copyright: 1995-2005 Jean-loup Gailly.
License: Zlib
Files: ext/src/samtools/win32/zlib.h
Copyright: 1995-2022 Jean-loup Gailly and Mark Adler
License: Zlib
Files: ext/src/teamcity_gtest/CMakeLists.txt
Copyright: 2016-2019 Saint Petersburg State University
License: Apache-2.0
Files: ext/src/teamcity_gtest/teamcity_gtest.cpp
Copyright: 2015, Paul Shmakov
License: Apache-2.0
Files: ext/src/teamcity_gtest/teamcity_messages.cpp
Copyright: 2011 JetBrains s.r.o.
License: Apache-2.0
Files: ext/src/zlib-ng/*
Copyright: 1995-2022 Jean-loup Gailly and Mark Adler
License: Zlib
Files: ext/src/zlib-ng/adler32.c
ext/src/zlib-ng/adler32_p.h
ext/src/zlib-ng/crc32_braid.c
ext/src/zlib-ng/crc32_braid_comb.c
ext/src/zlib-ng/gzguts.h
ext/src/zlib-ng/gzlib.c
ext/src/zlib-ng/gzread.c.in
ext/src/zlib-ng/gzwrite.c
ext/src/zlib-ng/infback.c
ext/src/zlib-ng/inffast_tpl.h
ext/src/zlib-ng/inflate.c
ext/src/zlib-ng/inflate.h
ext/src/zlib-ng/inftrees.c
ext/src/zlib-ng/inftrees.h
Copyright: 1995-2022, Mark Adler
License: Zlib
Files: ext/src/zlib-ng/adler32_fold.c
ext/src/zlib-ng/adler32_fold.h
Copyright: 2022, Adam Stylinski <kungfujesus06@gmail.com>
License: Zlib
Files: ext/src/zlib-ng/arch/arm/Makefile.in
Copyright: 1995-2022 Jean-loup Gailly, Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/arm/adler32_neon.c
Copyright: 2017 ARM Holdings Inc.
1995-2016 Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/arm/compare256_neon.c
Copyright: 2020-2022 Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/arch/arm/crc32_acle.c
Copyright: 2016 Yang Zhang
1995-2012 Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/arm/slide_hash_armv6.c
Copyright: 2023 Cameron Cawley
License: Zlib
Files: ext/src/zlib-ng/arch/arm/slide_hash_neon.c
Copyright: 2017-2021 Mika T. Lindqvist <postmaster@raasu.org>
License: Zlib
Files: ext/src/zlib-ng/arch/generic/Makefile.in
Copyright: 1995-2022 Jean-loup Gailly, Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/power/*
Copyright: 2019-2021 IBM Corporation
License: Zlib
Files: ext/src/zlib-ng/arch/power/Makefile.in
ext/src/zlib-ng/arch/power/power_features.c
ext/src/zlib-ng/arch/power/power_features.h
Copyright: 2021-2022 Mika T. Lindqvist <postmaster@raasu.org>
2020 Matheus Castanho <msc@linux.ibm.com>, IBM
License: Zlib
Files: ext/src/zlib-ng/arch/power/adler32_vmx.c
Copyright: 2021 Adam Stylinski <kungfujesus06@gmail.com>
2017-2023 Mika T. Lindqvist <postmaster@raasu.org>
1995-2011 Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/power/compare256_power9.c
Copyright: 2019 Matheus Castanho <msc@linux.ibm.com>, IBM
License: Zlib
Files: ext/src/zlib-ng/arch/power/slide_hash_vmx.c
ext/src/zlib-ng/arch/power/slide_ppc_tpl.h
Copyright: 2017-2021 Mika T. Lindqvist <postmaster@raasu.org>
License: Zlib
Files: ext/src/zlib-ng/arch/riscv/*
Copyright: 2023 SiFive, Inc.
License: Zlib
Files: ext/src/zlib-ng/arch/s390/Makefile.in
Copyright: 1995-2022 Jean-loup Gailly, Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/x86/Makefile.in
Copyright: 1995-2022 Jean-loup Gailly, Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/x86/adler32_avx2.c
ext/src/zlib-ng/arch/x86/adler32_avx512.c
ext/src/zlib-ng/arch/x86/adler32_avx512_vnni.c
ext/src/zlib-ng/arch/x86/adler32_sse42.c
ext/src/zlib-ng/arch/x86/adler32_ssse3.c
Copyright: 1995-2022 Mark Adler
License: Zlib
Files: ext/src/zlib-ng/arch/x86/adler32_avx2_p.h
ext/src/zlib-ng/arch/x86/adler32_avx2_tpl.h
ext/src/zlib-ng/arch/x86/adler32_avx512_tpl.h
ext/src/zlib-ng/arch/x86/adler32_ssse3_p.h
ext/src/zlib-ng/arch/x86/compare256_sse2.c
Copyright: 2022 Adam Stylinski <kungfujesus06@gmail.com>
License: Zlib
Files: ext/src/zlib-ng/arch/x86/compare256_avx2.c
Copyright: 2017-2021 Mika T. Lindqvist <postmaster@raasu.org>
License: Zlib
Files: ext/src/zlib-ng/arch/x86/crc32_fold_pclmulqdq_tpl.h
ext/src/zlib-ng/arch/x86/crc32_pclmulqdq.c
ext/src/zlib-ng/arch/x86/crc32_pclmulqdq_tpl.h
Copyright: 2016 Marian Beermann (support for initial value)
2013 Intel Corporation.
License: Zlib
Files: ext/src/zlib-ng/arch/x86/crc32_fold_vpclmulqdq_tpl.h
ext/src/zlib-ng/arch/x86/crc32_vpclmulqdq.c
Copyright: Wangyang Guo (wangyang.guo@intel.com)
License: Zlib
Files: ext/src/zlib-ng/arch/x86/slide_hash_avx2.c
ext/src/zlib-ng/arch/x86/slide_hash_sse2.c
Copyright: 2017 Intel Corporation
License: Zlib
Files: ext/src/zlib-ng/arch/x86/x86_features.c
Copyright: 2013 Intel Corporation.
License: Zlib
Files: ext/src/zlib-ng/arch/x86/x86_features.h
Copyright: 2013 Intel Corporation Jim Kukunas
License: Zlib
Files: ext/src/zlib-ng/cmake/detect-arch.c
ext/src/zlib-ng/cmake/detect-arch.cmake
ext/src/zlib-ng/cmake/detect-install-dirs.cmake
Copyright: 2019-2021 Hans Kristian Rosbach
License: Zlib
Files: ext/src/zlib-ng/cmake/fallback-macros.cmake
Copyright: 2021-2022 Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/compare256.c
ext/src/zlib-ng/compare256_rle.h
ext/src/zlib-ng/crc32_fold.c
ext/src/zlib-ng/crc32_fold.h
Copyright: 2020-2022 Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/cpu_features.c
ext/src/zlib-ng/cpu_features.h
ext/src/zlib-ng/functable.c
ext/src/zlib-ng/functable.h
Copyright: 2017 Hans Kristian Rosbach
License: Zlib
Files: ext/src/zlib-ng/deflate.h
ext/src/zlib-ng/trees.c
ext/src/zlib-ng/zutil.c
Copyright: 1995-2021 Jean-loup Gailly
License: Zlib
Files: ext/src/zlib-ng/deflate_medium.c
ext/src/zlib-ng/deflate_quick.c
Copyright: 2013 Intel Corporation.
License: Zlib
Files: ext/src/zlib-ng/doc/rfc1950.txt
Copyright: 1996 L. Peter Deutsch and Jean-Loup Gailly
License: Zlib
Files: ext/src/zlib-ng/doc/rfc1951.txt
ext/src/zlib-ng/doc/rfc1952.txt
Copyright: 1996 L. Peter Deutsch
License: Zlib
Files: ext/src/zlib-ng/insert_string_tpl.h
Copyright: 2013 Intel Corporation.
1995-2013 Jean-loup Gailly and Mark Adler
License: Zlib
Files: ext/src/zlib-ng/match_tpl.h
Copyright: 2014-2021 Konstantin Nosov
1995-2013 Jean-loup Gailly and Mark Adler
License: Zlib
Files: ext/src/zlib-ng/test/Makefile.in
Copyright: 2015 Daniel Axtens, IBM Corporation
1995-2013 Jean-loup Gailly and Mark Adler
License: Zlib
Files: ext/src/zlib-ng/test/benchmarks/benchmark_adler32.cc
ext/src/zlib-ng/test/benchmarks/benchmark_adler32_copy.cc
Copyright: 2022 Nathan Moinvaziri, Adam Stylinski
License: Zlib
Files: ext/src/zlib-ng/test/benchmarks/benchmark_compare256.cc
ext/src/zlib-ng/test/benchmarks/benchmark_compare256_rle.cc
ext/src/zlib-ng/test/benchmarks/benchmark_crc32.cc
ext/src/zlib-ng/test/benchmarks/benchmark_main.cc
Copyright: 2020-2022 Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/test/benchmarks/benchmark_slidehash.cc
Copyright: 2022 Adam Stylinski, Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/test/cmake/compress-and-verify.cmake
ext/src/zlib-ng/test/cmake/run-and-compare.cmake
ext/src/zlib-ng/test/cmake/run-and-redirect.cmake
Copyright: 2021-2022 Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/test/example.c
ext/src/zlib-ng/test/minigzip.c
ext/src/zlib-ng/test/fuzz/fuzzer_minigzip.c
Copyright: 1995-2021 Jean-loup Gailly
License: Zlib
Files: ext/src/zlib-ng/test/infcover.c
Copyright: 1995-2022 Mark Adler
License: Zlib
Files: ext/src/zlib-ng/test/minideflate.c
ext/src/zlib-ng/test/test_compare256.cc
ext/src/zlib-ng/test/test_compare256_rle.cc
Copyright: 2020-2022 Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/test/pigz/*
Copyright: 2021-2022 Nathan Moinvaziri
License: Zlib
Files: ext/src/zlib-ng/test/test_adler32.cc
ext/src/zlib-ng/test/test_crc32.cc
Copyright: 2019-2021 IBM Corporation
License: Zlib
Files: ext/src/zlib-ng/tools/makecrct.c
Copyright: 1995-2022 Mark Adler
License: Zlib
Files: ext/src/zlib-ng/tools/maketrees.c
Copyright: 1995-2021 Jean-loup Gailly
License: Zlib
Files: ext/src/zlib-ng/uncompr.c
Copyright: 1995-2016 Jean-loup Gailly, Mark Adler.
License: Zlib
Files: src/cmake/Modules/GetGitRevisionDescription.cmake
src/cmake/Modules/GetGitRevisionDescription.cmake.in
Copyright: Iowa State University 2009-2010
License: BSL-1.0
Files: src/common/adt/concurrent_dsu.cpp
src/common/adt/iterator_range.hpp
src/common/adt/lemiere_mod_reduce.hpp
src/common/adt/pack.hpp
src/common/alignment/*
Copyright: 2023-2024 SPAdes team
2014-2023 Saint Petersburg State University
License: GPL-2
Files: src/common/alignment/CMakeLists.txt
src/common/alignment/edge_index.hpp
src/common/alignment/kmer_mapper.hpp
src/common/alignment/kmer_mapper_logger.hpp
src/common/alignment/long_read_mapper.hpp
src/common/alignment/long_read_storage.hpp
src/common/alignment/sequence_mapper.hpp
src/common/alignment/sequence_mapper_notifier.hpp
src/common/alignment/pacbio/pac_index.hpp
src/common/alignment/pacbio/pacbio_read_structures.hpp
src/common/alignment/rna/*
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2015 Saint Petersburg Academic University
License: GPL-2
Files: src/common/assembly_graph/core/basic_graph_stats.hpp
src/common/assembly_graph/core/construction_helper.hpp
src/common/assembly_graph/core/debruijn_data.hpp
src/common/assembly_graph/core/graph_core.hpp
src/common/assembly_graph/core/id_distributor.hpp
src/common/assembly_graph/core/kmer_iterator.hpp
src/common/assembly_graph/graph_support/coverage_filling.hpp
src/common/assembly_graph/graph_support/coverage_uniformity_analyzer.cpp
src/common/assembly_graph/graph_support/coverage_uniformity_analyzer.hpp
src/common/assembly_graph/graph_support/marks_and_locks.hpp
src/common/assembly_graph/paths/*
src/common/configs/aligner_config.hpp
src/common/configs/distance_estimation.hpp
src/common/hmm/*
src/common/io/binary/*
src/common/io/dataset_support/dataset_readers.cpp
src/common/io/dataset_support/read_converter.cpp
src/common/io/graph/*
src/common/io/reads/async_read_stream.hpp
src/common/io/reads/binary_converter.cpp
src/common/io/reads/binary_streams.cpp
src/common/io/reads/coverage_filtering_read_wrapper.hpp
src/common/io/reads/edge_sequences_reader.hpp
src/common/io/reads/file_read_flags.hpp
src/common/io/reads/header_naming.hpp
src/common/io/reads/io_helper.cpp
src/common/io/reads/paired_readers.cpp
src/common/io/sam/bam_parser.cpp
src/common/io/sra/*
src/common/io/utils/*
src/common/kmer_index/*
src/common/kmer_index/extension_index/kmer_extension_index_builder.hpp
src/common/library/library_data.cpp
src/common/library/library_data.hpp
src/common/library/library_fwd.hpp
src/common/modules/path_extend/gap_analyzer.cpp
src/common/modules/path_extend/gap_analyzer.hpp
src/common/modules/path_extend/loop_detector.cpp
src/common/modules/path_extend/loop_traverser.cpp
src/common/modules/path_extend/overlap_analysis.hpp
src/common/modules/path_extend/overlap_remover.cpp
src/common/modules/path_extend/overlap_remover.hpp
src/common/modules/path_extend/path_deduplicator.hpp
src/common/modules/path_extend/path_extender.hpp
src/common/modules/path_extend/path_extenders.cpp
src/common/modules/path_extend/pe_resolver.cpp
src/common/modules/path_extend/pipeline/extenders_logic.hpp
src/common/modules/path_extend/pipeline/launcher.cpp
src/common/modules/path_extend/scaffolder2015/path_polisher.cpp
src/common/modules/path_extend/scaffolder2015/path_polisher.hpp
src/common/modules/simplification/complex_tip_clipper.hpp
src/common/modules/simplification/superbubble_finder.hpp
src/common/paired_info/concurrent_pair_info_buffer.hpp
src/common/paired_info/distance_estimation_utils.cpp
src/common/paired_info/distance_estimation_utils.hpp
src/common/paired_info/histptr.hpp
src/common/paired_info/paired_info_buffer.hpp
src/common/paired_info/paired_info_helpers.hpp
src/common/paired_info/paired_info_utils.cpp
src/common/paired_info/paired_info_utils.hpp
src/common/pipeline/graph_pack.cpp
src/common/pipeline/graph_pack_helpers.cpp
src/common/pipeline/sequence_mapper_gp_api.cpp
src/common/sequence/genome_storage.hpp
src/common/stages/read_conversion.cpp
src/common/stages/read_conversion.hpp
src/common/stages/ss_edge_split.cpp
src/common/stages/ss_edge_split.hpp
src/common/toolchain/*
src/common/utils/filesystem/*
src/common/utils/logger/*
src/common/utils/memory_limit.cpp
src/common/utils/version.cpp
src/common/utils/perf/timetracer.hpp
src/include/version.hpp
src/projects/binspreader/*
src/projects/cds_subgraphs/*
src/projects/ionhammer/CMakeLists.txt
src/projects/ionhammer/quality_metrics.h
Copyright: 2023-2024 SPAdes team
2014-2023 Saint Petersburg State University
License: GPL-2
Files: src/common/assembly_graph/paths/bidirectional_path.hpp
src/common/assembly_graph/paths/mapping_path.hpp
src/common/assembly_graph/paths/path_processor.hpp
src/common/assembly_graph/paths/path_utils.hpp
src/common/assembly_graph/paths/bidirectional_path_io/bidirectional_path_output.hpp
src/common/kmer_index/extension_index/*
src/common/kmer_index/kmer_mph/kmer_index.hpp
src/common/kmer_index/kmer_mph/kmer_index_builder.hpp
src/common/kmer_index/kmer_mph/kmer_splitters.hpp
src/common/kmer_index/ph_map/key_with_hash.hpp
src/common/kmer_index/ph_map/perfect_hash_map.hpp
src/common/kmer_index/ph_map/storing_traits.hpp
src/common/utils/filesystem/file_limit.hpp
src/common/utils/filesystem/path_helper.cpp
src/common/utils/filesystem/path_helper.hpp
src/common/utils/logger/log_writers.hpp
src/common/utils/logger/log_writers_thread.hpp
src/common/utils/logger/logger.hpp
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2015 Saint Petersburg Academic University
License: GPL-2
Files: src/common/io/graph/gfa.cpp
Copyright: 2023-2024 SPAdes team
2022 Anton Korobeynikov
License: GPL-3+
Files: src/common/io/reads/mpmc_bounded.hpp
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2014 Saint Petersburg Academic University
License: BSD-2-clause
Files: src/common/io/reads/parser.cpp
src/common/io/reads/parser.hpp
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2014 Saint Petersburg Academic University
License: GPL-2+
Files: src/common/math/xmath.h
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2014 Saint Petersburg Academic University
License: BSD-3-clause
Files: src/common/sequence/seq.hpp
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2014 Saint Petersburg Academic University
License: GPL-2+
Files: src/common/utils/md5.h
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2014 Saint Petersburg Academic University
License: NTP
Files: src/projects/hammer/parallel_radix_sort.hpp
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2010 Takuya Akiba
License: BSD-3-clause
Files: src/projects/ionhammer/seqeval/*
Copyright: 2023-2024 SPAdes team
2012-2013 Ion Torrent Systems, Inc.
License: GPL-2
Comment: Assumed to be under GPL-2+ as well, cf. https://github.com/iontorrent/TS
Files: src/projects/mts/getopt_pp/*
Copyright: 2007-2008 Daniel Gutson, FuDePAN
License: GPL-3+
Files: src/projects/mts/gzstream/*
Copyright: 2001 Deepak Bandyopadhyay, Lutz Kettner
License: LGPL-2.1+
Files: src/projects/mts/gzstream/gzstream.h
Copyright: 2023-2024 SPAdes team
License: LGPL-2.1+
Files: src/projects/mts/kmc_api/*
Copyright: 2023-2024 SPAdes team
License: GPL-3
Files: src/projects/mts/scripts/bhtsne.py
Copyright: 2023-2024 SPAdes team
License: ISC
Files: src/projects/mts/stats.cpp
src/projects/online_vis/drawing_commands/draw_missasemblies.hpp
src/projects/pathracer/CMakeLists.txt
src/projects/pathracer/align_kmers.cpp
src/projects/pathracer/cached_aa_cursor.hpp
src/projects/pathracer/cached_cursor.hpp
src/projects/pathracer/cursor_conn_comps.hpp
src/projects/pathracer/cursor_neighborhood.hpp
src/projects/pathracer/cursor_utils.hpp
src/projects/pathracer/depth_filter.hpp
src/projects/pathracer/find_best_path.cpp
src/projects/pathracer/find_best_path.hpp
src/projects/pathracer/graph_exact_finder.cpp
src/projects/pathracer/hmm_path_info.hpp
src/projects/pathracer/main.cpp
src/projects/pathracer/open_event_graph.cpp
src/projects/pathracer/path_utils.hpp
src/projects/pathracer/pathracer-seq-fs.cpp
src/projects/pathracer/pathracer.cpp
src/projects/pathracer/pathtrie.hpp
src/projects/pathracer/reversed_cursor.hpp
src/projects/pathracer/string_cursor.hpp
src/projects/pathracer/superpath_index.hpp
src/projects/pathracer/trie.hpp
src/projects/spades/domain_graph.cpp
src/projects/spades/domain_graph.hpp
src/projects/spades/domain_graph_construction.cpp
src/projects/spades/domain_graph_construction.hpp
src/projects/spades/domain_matcher.cpp
src/projects/spades/domain_matcher.hpp
src/projects/spades/extract_domains.cpp
src/projects/spades/extract_domains.hpp
src/projects/spades/load_graph.cpp
src/projects/spades/load_graph.hpp
src/projects/spades/mismatch_correction.cpp
src/projects/spades/pipeline.cpp
src/projects/spades/restricted_edges_filling.cpp
src/projects/spades/restricted_edges_filling.hpp
src/projects/spades/second_phase_setup.cpp
src/projects/spades/second_phase_setup.hpp
src/projects/spades/series_analysis.cpp
src/projects/spades/show_saves.py
src/projects/spades/wastewater_disentangle.cpp
src/projects/spades/wastewater_disentangle.hpp
src/projects/spades/pipeline/CMakeLists.txt
src/projects/spades/pipeline/spades_pipeline/commands_parser.py
src/projects/spades/pipeline/spades_pipeline/options_parser.py
src/projects/spades/pipeline/spades_pipeline/common/*
src/projects/spades/pipeline/spades_pipeline/executors/*
src/projects/spades/pipeline/spades_pipeline/scripts/copy_files.py
src/projects/spades/pipeline/spades_pipeline/scripts/preprocess_contigs.py
src/projects/spades/pipeline/spades_pipeline/stages/stage.py
src/projects/spades/pipeline/spades_pipeline/stages/terminating_stage.py
src/projects/spades_tools/*
src/projects/spaligner/CMakeLists.txt
src/projects/spaligner/align_longreads.cpp
src/projects/spaligner/form_truealignments.cpp
src/projects/spaligner/mapping_printer.cpp
src/projects/spaligner/mapping_printer.hpp
src/test/adt/CMakeLists.txt
src/test/debruijn/CMakeLists.txt
src/test/debruijn/construction_test.cpp
src/test/debruijn/graph_core_test.cpp
src/test/debruijn/graphio.cpp
src/test/debruijn/graphio.hpp
src/test/debruijn/histogram_test.cpp
src/test/debruijn/io_test.cpp
src/test/debruijn/overlap_analysis_test.cpp
src/test/debruijn/overlap_removal_test.cpp
src/test/debruijn/paired_info_test.cpp
src/test/debruijn/path_extend_test.cpp
src/test/debruijn/simplification_test.cpp
src/test/debruijn/test.cpp
src/test/debruijn/test_utils.cpp
src/test/debruijn/test_utils.hpp
src/test/debruijn/tmp_folder_fixture.hpp
src/test/debruijn/v_overlaps.cpp
src/test/examples/CMakeLists.txt
src/test/examples/thread_sequences.cpp
src/test/include_test/*
src/test/teamcity/teamcity_kmertools/*
src/test/teamcity/teamcity_workflow/*
src/tools/res_counter/spades_pipeline_measurer.sh
Copyright: 2023-2024 SPAdes team
2014-2023 Saint Petersburg State University
License: GPL-2
Files: src/projects/spades_tools/gbuilder.cpp
src/projects/spades_tools/kmercount.cpp
src/projects/spades_tools/read_filter.cpp
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2015 Saint Petersburg Academic University
License: GPL-2
Files: src/tools/res_counter/pstree.c
Copyright: 2023-2024 SPAdes team
2015-2022 Saint Petersburg State University
2011-2014 Saint Petersburg Academic University
1993-2010 Fred Hucht
License: GPL-2
Files: debian/*
Copyright: 2014-2016 Andreas Tille <tille@debian.org>
2015-2016 Afif Elghraoui <afif@debian.org>
2016 Sascha Steinbiss <sascha@steinbiss.name>
2021-2022 Étienne Mollier <emollier@debian.org>
2024 Pierre Gruet <pgt@debian.org>
License: GPL-2+
License: Apache-2.0
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
.
http://www.apache.org/licenses/LICENSE-2.0
.
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
.
On Debian systems, the full text of the Apache License, Version 2.0 can be
found in the file `/usr/share/common-licenses/Apache-2.0'.
License: BSD-2-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
.
1. Redistributions of source code must retain the above copyright notice, this
list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS" AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE
DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR
ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND
ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
(INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS
SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
License: BSD-3-clause
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
.
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
3. The names of its contributors may not be used to endorse or promote
products derived from this software without specific prior written
permission.
.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
OF THE POSSIBILITY OF SUCH DAMAGE.
License: BSL-1.0
Boost Software License - Version 1.0 - August 17th, 2003
.
Permission is hereby granted, free of charge, to any person or
organization obtaining a copy of the software and accompanying
documentation covered by this license (the "Software") to use,
reproduce, display, distribute, execute, and transmit the
Software, and to prepare derivative works of the Software, and
to permit third-parties to whom the Software is furnished to do
so, all subject to the following:
.
The copyright notices in the Software and this entire statement,
including the above license grant, this restriction and the
following disclaimer, must be included in all copies of the
Software, in whole or in part, and all derivative works of the
Software, unless such copies or derivative works are solely in
the form of machine-executable object code generated by a source
language processor.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, TITLE AND
NON-INFRINGEMENT. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR
ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE FOR ANY DAMAGES OR
OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE, ARISING
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
OTHER DEALINGS IN THE SOFTWARE.
License: CC-BY-3.0
Creative Commons Attribution 3.0 Unported
.
CREATIVE COMMONS CORPORATION IS NOT A LAW FIRM AND DOES NOT PROVIDE
LEGAL SERVICES. DISTRIBUTION OF THIS LICENSE DOES NOT CREATE AN
ATTORNEY-CLIENT RELATIONSHIP. CREATIVE COMMONS PROVIDES THIS INFORMATION
ON AN "AS-IS" BASIS. CREATIVE COMMONS MAKES NO WARRANTIES REGARDING THE
INFORMATION PROVIDED, AND DISCLAIMS LIABILITY FOR DAMAGES RESULTING FROM
ITS USE.
.
License
.
THE WORK (AS DEFINED BELOW) IS PROVIDED UNDER THE TERMS OF THIS CREATIVE
COMMONS PUBLIC LICENSE ("CCPL" OR "LICENSE"). THE WORK IS PROTECTED BY
COPYRIGHT AND/OR OTHER APPLICABLE LAW. ANY USE OF THE WORK OTHER THAN AS
AUTHORIZED UNDER THIS LICENSE OR COPYRIGHT LAW IS PROHIBITED.
.
BY EXERCISING ANY RIGHTS TO THE WORK PROVIDED HERE, YOU ACCEPT AND AGREE
TO BE BOUND BY THE TERMS OF THIS LICENSE. TO THE EXTENT THIS LICENSE MAY
BE CONSIDERED TO BE A CONTRACT, THE LICENSOR GRANTS YOU THE RIGHTS
CONTAINED HERE IN CONSIDERATION OF YOUR ACCEPTANCE OF SUCH TERMS AND
CONDITIONS.
.
1. Definitions
.
a. "Adaptation" means a work based upon the Work, or upon the Work and
other pre-existing works, such as a translation, adaptation, derivative
work, arrangement of music or other alterations of a literary or
artistic work, or phonogram or performance and includes cinematographic
adaptations or any other form in which the Work may be recast,
transformed, or adapted including in any form recognizably derived from
the original, except that a work that constitutes a Collection will not
be considered an Adaptation for the purpose of this License. For the
avoidance of doubt, where the Work is a musical work, performance or
phonogram, the synchronization of the Work in timed-relation with a
moving image ("synching") will be considered an Adaptation for the
purpose of this License.
.
b. "Collection" means a collection of literary or artistic works, such
as encyclopedias and anthologies, or performances, phonograms or
broadcasts, or other works or subject matter other than works listed in
Section 1(f) below, which, by reason of the selection and arrangement of
their contents, constitute intellectual creations, in which the Work is
included in its entirety in unmodified form along with one or more other
contributions, each constituting separate and independent works in
themselves, which together are assembled into a collective whole. A work
that constitutes a Collection will not be considered an Adaptation (as
defined above) for the purposes of this License.
.
c. "Distribute" means to make available to the public the original and
copies of the Work or Adaptation, as appropriate, through sale or other
transfer of ownership.
.
d. "Licensor" means the individual, individuals, entity or entities that
offer(s) the Work under the terms of this License.
.
e. "Original Author" means, in the case of a literary or artistic work,
the individual, individuals, entity or entities who created the Work or
if no individual or entity can be identified, the publisher; and in
addition (i) in the case of a performance the actors, singers,
musicians, dancers, and other persons who act, sing, deliver, declaim,
play in, interpret or otherwise perform literary or artistic works or
expressions of folklore; (ii) in the case of a phonogram the producer
being the person or legal entity who first fixes the sounds of a
performance or other sounds; and, (iii) in the case of broadcasts, the
organization that transmits the broadcast.
.
f. "Work" means the literary and/or artistic work offered under the
terms of this License including without limitation any production in the
literary, scientific and artistic domain, whatever may be the mode or
form of its expression including digital form, such as a book, pamphlet
and other writing; a lecture, address, sermon or other work of the same
nature; a dramatic or dramatico-musical work; a choreographic work or
entertainment in dumb show; a musical composition with or without words;
a cinematographic work to which are assimilated works expressed by a
process analogous to cinematography; a work of drawing, painting,
architecture, sculpture, engraving or lithography; a photographic work
to which are assimilated works expressed by a process analogous to
photography; a work of applied art; an illustration, map, plan, sketch
or three-dimensional work relative to geography, topography,
architecture or science; a performance; a broadcast; a phonogram; a
compilation of data to the extent it is protected as a copyrightable
work; or a work performed by a variety or circus performer to the extent
it is not otherwise considered a literary or artistic work.
.
g. "You" means an individual or entity exercising rights under this
License who has not previously violated the terms of this License with
respect to the Work, or who has received express permission from the
Licensor to exercise rights under this License despite a previous
violation.
.
h. "Publicly Perform" means to perform public recitations of the Work
and to communicate to the public those public recitations, by any means
or process, including by wire or wireless means or public digital
performances; to make available to the public Works in such a way that
members of the public may access these Works from a place and at a place
individually chosen by them; to perform the Work to the public by any
means or process and the communication to the public of the performances
of the Work, including by public digital performance; to broadcast and
rebroadcast the Work by any means including signs, sounds or images.
.
i. "Reproduce" means to make copies of the Work by any means including
without limitation by sound or visual recordings and the right of
fixation and reproducing fixations of the Work, including storage of a
protected performance or phonogram in digital form or other electronic
medium.
.
2. Fair Dealing Rights. Nothing in this License is intended to reduce,
limit, or restrict any uses free from copyright or rights arising from
limitations or exceptions that are provided for in connection with the
copyright protection under copyright law or other applicable laws.
.
3. License Grant. Subject to the terms and conditions of this License,
Licensor hereby grants You a worldwide, royalty-free, non-exclusive,
perpetual (for the duration of the applicable copyright) license to
exercise the rights in the Work as stated below:
.
a. to Reproduce the Work, to incorporate the Work into one or more
Collections, and to Reproduce the Work as incorporated in the
Collections;
.
b. to create and Reproduce Adaptations provided that any such
Adaptation, including any translation in any medium, takes reasonable
steps to clearly label, demarcate or otherwise identify that changes
were made to the original Work. For example, a translation could be
marked "The original work was translated from English to Spanish," or a
modification could indicate "The original work has been modified.";
.
c. to Distribute and Publicly Perform the Work including as incorporated
in Collections; and,
.
d. to Distribute and Publicly Perform Adaptations.
.
e. For the avoidance of doubt:
.
i. Non-waivable Compulsory License Schemes. In those jurisdictions in
which the right to collect royalties through any statutory or compulsory
licensing scheme cannot be waived, the Licensor reserves the exclusive
right to collect such royalties for any exercise by You of the rights
granted under this License;
.
ii. Waivable Compulsory License Schemes. In those jurisdictions in which
the right to collect royalties through any statutory or compulsory
licensing scheme can be waived, the Licensor waives the exclusive right
to collect such royalties for any exercise by You of the rights granted
under this License; and,
.
iii. Voluntary License Schemes. The Licensor waives the right to collect
royalties, whether individually or, in the event that the Licensor is a
member of a collecting society that administers voluntary licensing
schemes, via that society, from any exercise by You of the rights
granted under this License.
.
The above rights may be exercised in all media and formats whether now
known or hereafter devised. The above rights include the right to make
such modifications as are technically necessary to exercise the rights
in other media and formats. Subject to Section 8(f), all rights not
expressly granted by Licensor are hereby reserved.
.
4. Restrictions. The license granted in Section 3 above is expressly
made subject to and limited by the following restrictions:
.
a. You may Distribute or Publicly Perform the Work only under the terms
of this License. You must include a copy of, or the Uniform Resource
Identifier (URI) for, this License with every copy of the Work You
Distribute or Publicly Perform. You may not offer or impose any terms on
the Work that restrict the terms of this License or the ability of the
recipient of the Work to exercise the rights granted to that recipient
under the terms of the License. You may not sublicense the Work. You
must keep intact all notices that refer to this License and to the
disclaimer of warranties with every copy of the Work You Distribute or
Publicly Perform. When You Distribute or Publicly Perform the Work, You
may not impose any effective technological measures on the Work that
restrict the ability of a recipient of the Work from You to exercise the
rights granted to that recipient under the terms of the License. This
Section 4(a) applies to the Work as incorporated in a Collection, but
this does not require the Collection apart from the Work itself to be
made subject to the terms of this License. If You create a Collection,
upon notice from any Licensor You must, to the extent practicable,
remove from the Collection any credit as required by Section 4(b), as
requested. If You create an Adaptation, upon notice from any Licensor
You must, to the extent practicable, remove from the Adaptation any
credit as required by Section 4(b), as requested.
.
b. If You Distribute, or Publicly Perform the Work or any Adaptations or
Collections, You must, unless a request has been made pursuant to
Section 4(a), keep intact all copyright notices for the Work and
provide, reasonable to the medium or means You are utilizing: (i) the
name of the Original Author (or pseudonym, if applicable) if supplied,
and/or if the Original Author and/or Licensor designate another party or
parties (e.g., a sponsor institute, publishing entity, journal) for
attribution ("Attribution Parties") in Licensor's copyright notice,
terms of service or by other reasonable means, the name of such party or
parties; (ii) the title of the Work if supplied; (iii) to the extent
reasonably practicable, the URI, if any, that Licensor specifies to be
associated with the Work, unless such URI does not refer to the
copyright notice or licensing information for the Work; and (iv) ,
consistent with Section 3(b), in the case of an Adaptation, a credit
identifying the use of the Work in the Adaptation (e.g., "French
translation of the Work by Original Author," or "Screenplay based on
original Work by Original Author"). The credit required by this Section
4 (b) may be implemented in any reasonable manner; provided, however,
that in the case of a Adaptation or Collection, at a minimum such credit
will appear, if a credit for all contributing authors of the Adaptation
or Collection appears, then as part of these credits and in a manner at
least as prominent as the credits for the other contributing authors.
For the avoidance of doubt, You may only use the credit required by this
Section for the purpose of attribution in the manner set out above and,
by exercising Your rights under this License, You may not implicitly or
explicitly assert or imply any connection with, sponsorship or
endorsement by the Original Author, Licensor and/or Attribution Parties,
as appropriate, of You or Your use of the Work, without the separate,
express prior written permission of the Original Author, Licensor and/or
Attribution Parties.
.
c. Except as otherwise agreed in writing by the Licensor or as may be
otherwise permitted by applicable law, if You Reproduce, Distribute or
Publicly Perform the Work either by itself or as part of any Adaptations
or Collections, You must not distort, mutilate, modify or take other
derogatory action in relation to the Work which would be prejudicial to
the Original Author's honor or reputation. Licensor agrees that in those
jurisdictions (e.g. Japan), in which any exercise of the right granted
in Section 3(b) of this License (the right to make Adaptations) would be
deemed to be a distortion, mutilation, modification or other derogatory
action prejudicial to the Original Author's honor and reputation, the
Licensor will waive or not assert, as appropriate, this Section, to the
fullest extent permitted by the applicable national law, to enable You
to reasonably exercise Your right under Section 3(b) of this License
(right to make Adaptations) but not otherwise.
.
5. Representations, Warranties and Disclaimer
.
UNLESS OTHERWISE MUTUALLY AGREED TO BY THE PARTIES IN WRITING, LICENSOR
OFFERS THE WORK AS-IS AND MAKES NO REPRESENTATIONS OR WARRANTIES OF ANY
KIND CONCERNING THE WORK, EXPRESS, IMPLIED, STATUTORY OR OTHERWISE,
INCLUDING, WITHOUT LIMITATION, WARRANTIES OF TITLE, MERCHANTIBILITY,
FITNESS FOR A PARTICULAR PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF
LATENT OR OTHER DEFECTS, ACCURACY, OR THE PRESENCE OF ABSENCE OF ERRORS,
WHETHER OR NOT DISCOVERABLE. SOME JURISDICTIONS DO NOT ALLOW THE
EXCLUSION OF IMPLIED WARRANTIES, SO SUCH EXCLUSION MAY NOT APPLY TO YOU.
.
6. Limitation on Liability. EXCEPT TO THE EXTENT REQUIRED BY APPLICABLE
LAW, IN NO EVENT WILL LICENSOR BE LIABLE TO YOU ON ANY LEGAL THEORY FOR
ANY SPECIAL, INCIDENTAL, CONSEQUENTIAL, PUNITIVE OR EXEMPLARY DAMAGES
ARISING OUT OF THIS LICENSE OR THE USE OF THE WORK, EVEN IF LICENSOR HAS
BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
.
7. Termination
.
a. This License and the rights granted hereunder will terminate
automatically upon any breach by You of the terms of this License.
Individuals or entities who have received Adaptations or Collections
from You under this License, however, will not have their licenses
terminated provided such individuals or entities remain in full
compliance with those licenses. Sections 1, 2, 5, 6, 7, and 8 will
survive any termination of this License.
.
b. Subject to the above terms and conditions, the license granted here
is perpetual (for the duration of the applicable copyright in the Work).
Notwithstanding the above, Licensor reserves the right to release the
Work under different license terms or to stop distributing the Work at
any time; provided, however that any such election will not serve to
withdraw this License (or any other license that has been, or is
required to be, granted under the terms of this License), and this
License will continue in full force and effect unless terminated as
stated above.
.
8. Miscellaneous
.
a. Each time You Distribute or Publicly Perform the Work or a
Collection, the Licensor offers to the recipient a license to the Work
on the same terms and conditions as the license granted to You under
this License.
.
b. Each time You Distribute or Publicly Perform an Adaptation, Licensor
offers to the recipient a license to the original Work on the same terms
and conditions as the license granted to You under this License.
.
c. If any provision of this License is invalid or unenforceable under
applicable law, it shall not affect the validity or enforceability of
the remainder of the terms of this License, and without further action
by the parties to this agreement, such provision shall be reformed to
the minimum extent necessary to make such provision valid and
enforceable.
.
d. No term or provision of this License shall be deemed waived and no
breach consented to unless such waiver or consent shall be in writing
and signed by the party to be charged with such waiver or consent. This
License constitutes the entire agreement between the parties with
respect to the Work licensed here. There are no understandings,
agreements or representations with respect to the Work not specified
here. Licensor shall not be bound by any additional provisions that may
appear in any communication from You.
.
e. This License may not be modified without the mutual written agreement
of the Licensor and You.
.
f. The rights granted under, and the subject matter referenced, in this
License were drafted utilizing the terminology of the Berne Convention
for the Protection of Literary and Artistic Works (as amended on
September 28, 1979), the Rome Convention of 1961, the WIPO Copyright
Treaty of 1996, the WIPO Performances and Phonograms Treaty of 1996 and
the Universal Copyright Convention (as revised on July 24, 1971). These
rights and subject matter take effect in the relevant jurisdiction in
which the License terms are sought to be enforced according to the
corresponding provisions of the implementation of those treaty
provisions in the applicable national law. If the standard suite of
rights granted under applicable copyright law includes additional rights
not granted under this License, such additional rights are deemed to be
included in the License; this License is not intended to restrict the
license of any rights under applicable law.
.
Creative Commons Notice
.
Creative Commons is not a party to this License, and makes no warranty
whatsoever in connection with the Work. Creative Commons will not be
liable to You or any party on any legal theory for any damages
whatsoever, including without limitation any general, special,
incidental or consequential damages arising in connection to this
license. Notwithstanding the foregoing two (2) sentences, if Creative
Commons has expressly identified itself as the Licensor hereunder, it
shall have all rights and obligations of Licensor.
.
Except for the limited purpose of indicating to the public that the Work
is licensed under the CCPL, Creative Commons does not authorize the use
by either party of the trademark "Creative Commons" or any related
trademark or logo of Creative Commons without the prior written consent
of Creative Commons. Any permitted use will be in compliance with
Creative Commons' then-current trademark usage guidelines, as may be
published on its website or otherwise made available upon request from
time to time. For the avoidance of doubt, this trademark restriction
does not form part of this License.
.
Creative Commons may be contacted at https://creativecommons.org/.
License: Expat
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
.
The above copyright notice and this permission notice shall be included in
all copies or substantial portions of the Software.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN
THE SOFTWARE.
License: GPL-2
On Debian systems you can find the full test of the GNU General Public
License version 2 at /usr/share/common-licenses/GPL-2.
License: GPL-2+
On Debian systems you can find the full test of the GNU General Public
License version 2 at /usr/share/common-licenses/GPL-2.
License: GPL-3
On Debian systems, the complete text of the GNU General
Public License can be found in `/usr/share/common-licenses/GPL-3'.
License: GPL-3+
On Debian systems, the complete text of the GNU General
Public License can be found in `/usr/share/common-licenses/GPL-3'.
License: ISC
Permission to use, copy, modify, and/or distribute this software for any
purpose with or without fee is hereby granted, provided that the above
copyright notice and this permission notice appear in all copies.
.
THE SOFTWARE IS PROVIDED "AS IS" AND THE AUTHOR DISCLAIMS ALL WARRANTIES
WITH REGARD TO THIS SOFTWARE INCLUDING ALL IMPLIED WARRANTIES OF
MERCHANTABILITY AND FITNESS. IN NO EVENT SHALL THE AUTHOR BE LIABLE FOR
ANY SPECIAL, DIRECT, INDIRECT, OR CONSEQUENTIAL DAMAGES OR ANY DAMAGES
WHATSOEVER RESULTING FROM LOSS OF USE, DATA OR PROFITS, WHETHER IN AN
ACTION OF CONTRACT, NEGLIGENCE OR OTHER TORTIOUS ACTION, ARISING OUT OF
OR IN CONNECTION WITH THE USE OR PERFORMANCE OF THIS SOFTWARE.
License: LGPL-2.1+
On Debian systems, the complete text of the GNU Lesser General Public
License version 2.1 can be found in ‘/usr/share/common-licenses/LGPL-2.1’.
License: NTP
License to copy and use this software is granted provided that it
is identified as the "RSA Data Security, Inc. MD5 Message-Digest
Algorithm" in all material mentioning or referencing this software
or this function.
.
License is also granted to make and use derivative works provided
that such works are identified as "derived from the RSA Data
Security, Inc. MD5 Message-Digest Algorithm" in all material
mentioning or referencing the derived work.
.
RSA Data Security, Inc. makes no representations concerning either
the merchantability of this software or the suitability of this
software for any particular purpose. It is provided "as is"
without express or implied warranty of any kind.
.
These notices must be retained in any copies of any part of this
documentation and/or software.
License: public-domain
No copyright is claimed.
License: SUN
Permission to use, copy, modify, and distribute this
software is freely granted, provided that this notice
is preserved.
License: UoI-NCSA
Permission is hereby granted, free of charge, to any person obtaining a copy of
this software and associated documentation files (the "Software"), to deal with
the Software without restriction, including without limitation the rights to
use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
of the Software, and to permit persons to whom the Software is furnished to do
so, subject to the following conditions:
.
* Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimers.
.
* Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimers in the
documentation and/or other materials provided with the distribution.
.
* Neither the names of the LLVM Team, University of Illinois at
Urbana-Champaign, nor the names of its contributors may be used to
endorse or promote products derived from this Software without specific
prior written permission.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
CONTRIBUTORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS WITH THE
SOFTWARE.
License: X11
Permission is hereby granted, free of charge, to any person obtaining a
copy of this software and associated documentation files (the
"Software"), to deal in the Software without restriction, including
without limitation the rights to use, copy, modify, merge, publish,
distribute, distribute with modifications, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
.
The above copyright notice and this permission notice shall be included
in all copies or substantial portions of the Software.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS
OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
IN NO EVENT SHALL THE ABOVE COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR
OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR
THE USE OR OTHER DEALINGS IN THE SOFTWARE.
.
Except as contained in this notice, the name(s) of the above copyright
holders shall not be used in advertising or otherwise to promote the
sale, use or other dealings in this Software without prior written
authorization.
License: Zlib
This software is provided 'as-is', without any express or
implied warranty. In no event will the authors be held liable
for any damages arising from the use of this software.
.
Permission is granted to anyone to use this software for any
purpose, including commercial applications, and to alter it and
redistribute it freely, subject to the following restrictions:
.
1. The origin of this software must not be misrepresented; you
must not claim that you wrote the original software. If you
use this software in a product, an acknowledgment in the
product documentation would be appreciated but is not
required.
2. Altered source versions must be plainly marked as such, and
must not be misrepresented as being the original software.
3. This notice may not be removed or altered from any source
distribution.