staden-io-lib (1.14.15-1) unstable; urgency=medium * New upstream version (bugfix release needed for salmon) * Patch applied in previous package was included upstream -- Andreas Tille Tue, 14 Mar 2023 07:41:05 +0100 staden-io-lib (1.14.14+dfsg-3) unstable; urgency=medium * Fix watch file * Set upstream metadata fields: Bug-Submit. -- Andreas Tille Sun, 27 Nov 2022 07:02:30 +0100 staden-io-lib (1.14.14+dfsg-2) unstable; urgency=medium * Work around missing declaration of encode_names in libhtscodecs2 version 1.3.0 Closes: #1022282 * Standards-Version: 4.6.1 (routine-update) * Set upstream metadata fields: Archive. -- Andreas Tille Fri, 28 Oct 2022 07:19:58 +0200 staden-io-lib (1.14.14+dfsg-1) unstable; urgency=medium * Fix watchfile to detect new versions on github * New upstream version * Standards-Version: 4.6.0 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Build-Depends: libbz2-dev, liblzma-dev * Exclude compiled executable htscodecs/tests/varint -- Andreas Tille Wed, 06 Oct 2021 21:49:12 +0200 staden-io-lib (1.14.13-4) unstable; urgency=medium * Fix build for 32 bit systems courtesy a patch from upstream. Updated symbols file to match. * REALLY install io_lib_config.h to /usr/include/io_lib/ -- Michael R. Crusoe Tue, 28 Jul 2020 12:42:20 +0200 staden-io-lib (1.14.13-3) unstable; urgency=medium * Install io_lib_config.h to /usr/include/io_lib/ * Add new symbols to debian/libstaden-read14.symbols -- Michael R. Crusoe Sun, 19 Jul 2020 17:25:41 +0200 staden-io-lib (1.14.13-2) unstable; urgency=medium * Don't run dh_missing in for arch independent builds. -- Michael R. Crusoe Thu, 16 Jul 2020 13:49:13 +0200 staden-io-lib (1.14.13-1) unstable; urgency=medium * New upstream version * debhelper-compat 13 (routine-update) * s390x patch removed, fixed upstream. * Other patches refreshed. * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) -- Michael R. Crusoe Thu, 16 Jul 2020 12:49:13 +0200 staden-io-lib (1.14.12-2) unstable; urgency=medium * File more spelling typos * Install upstream's manual pages * include symbols in the package * debian/control: fix typo in the package descriptions * debian/rules: add hack to autoconf not forget MMAP with cross building * debian/patches/s390x: applied patch from upstream to fix big endian builds * debian/patches/usedebianhtscodecs.patch: added DEP-3 patch metadata * debian/upstream/metadata: added repository & bug entries -- Michael R. Crusoe Thu, 21 May 2020 13:13:22 +0200 staden-io-lib (1.14.12-1) unstable; urgency=medium * Team upload. [ Michael Crusoe ] * New upstream version * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 12 (routine-update) * Remove many patches incorporated upstream * autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update) [ Steffen Moeller ] * Fixed FTBFS - added dep on libhtscodecs-dev now distributed as a git submodule of staden-io-lib. * Rules-Requires-Root: no * Adjusted library package name to updated soversion 14 * Added extra argument to d-shlibmove to override search for unversioned libhtscodecs-dev package -- Michael R. Crusoe Mon, 10 Feb 2020 10:51:13 +0100 staden-io-lib (1.14.11-6) unstable; urgency=medium * Switch to -O0 on armhf, mips. Closes: #916262 * Standards-Version: 4.3.0 * debian/control: mark staden-io-lib-examples as Multi-Arch: foreign * changelog & debian/patches/spelling: typo fix (independent) -- Michael R. Crusoe Wed, 02 Jan 2019 03:08:23 -0800 staden-io-lib (1.14.11-5) unstable; urgency=medium * Fix hash table HASH_INT_KEYS on 32-bit platforms (thanks to upstream Rob Davies) * Do not attempt to run test suite for architecture independent build. * Use serial tests -- Andreas Tille Fri, 07 Dec 2018 12:55:44 +0100 staden-io-lib (1.14.11-4) unstable; urgency=medium * Apply three patches from upstream to fix bugs on several architectures (thanks a lot for the support by James Bonfield) Closes: #915450, #915459, #915460 -- Andreas Tille Fri, 07 Dec 2018 07:56:28 +0100 staden-io-lib (1.14.11-3) unstable; urgency=medium * Remove bashism in test script Closes: #915460 -- Andreas Tille Tue, 04 Dec 2018 19:35:00 +0100 staden-io-lib (1.14.11-2) unstable; urgency=medium * Fix build on non-x86 architectures (thanks to James Bonfield ) Closes: #912451 * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright -- Andreas Tille Sun, 02 Dec 2018 08:50:21 +0100 staden-io-lib (1.14.11-1) unstable; urgency=medium * New upstream version featuring SOVERSION bump * Fix installation of docs Closes: #912272 * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 -- Andreas Tille Mon, 29 Oct 2018 20:24:24 +0100 staden-io-lib (1.14.9-4) unstable; urgency=medium * Standards-Version: 4.1.2 * Really fix fseeko() Closes: #876840 -- Andreas Tille Fri, 08 Dec 2017 08:32:32 +0100 staden-io-lib (1.14.9-3) unstable; urgency=medium * Fix FTBFS on big endian: error: invalid operands to binary (Thanks to James Bonfield and Christian Seiler) Closes: #876839 * Upstream moved to Github * Attempt to fix FTBFS on non-i386 32bit for fseeko() Related to bug #876840 -- Andreas Tille Thu, 28 Sep 2017 16:28:30 +0200 staden-io-lib (1.14.9-2) unstable; urgency=medium * Update copyright * Disable parallel build which was forced by debhelper 10 Closes: #876699 -- Andreas Tille Mon, 25 Sep 2017 08:56:42 +0200 staden-io-lib (1.14.9-1) unstable; urgency=medium * New upstream version * Move packaging from SVN to Git * debhelper 10 * Standards-Version: 4.1.0 (no changes needed) -- Andreas Tille Tue, 12 Sep 2017 15:35:36 +0200 staden-io-lib (1.14.8-2) unstable; urgency=medium * make sure io_lib-config --libs will not return -pie (see #825461) -- Andreas Tille Fri, 27 May 2016 16:07:11 +0200 staden-io-lib (1.14.8-1) unstable; urgency=medium * New upstream version * cme fix dpkg-control * Better hardening -- Andreas Tille Thu, 19 May 2016 00:38:22 +0200 staden-io-lib (1.14.7-1) unstable; urgency=medium * New upstream version * Add lintian-overrides for scripts in example package * Assemble debian created manpages in debian/man1 * Add new manpage * cme fix dpkg-control -- Andreas Tille Sun, 21 Feb 2016 09:14:45 +0100 staden-io-lib (1.14.6-2) unstable; urgency=medium * Enable separate building of arch independet packages Closes: #806112 * Adapt to latest d-shlibs -- Andreas Tille Tue, 24 Nov 2015 20:15:14 +0100 staden-io-lib (1.14.6-1) unstable; urgency=medium * New upstream version Closes: #793514 -- Andreas Tille Sun, 08 Nov 2015 18:50:19 +0100 staden-io-lib (1.14.2-1) unstable; urgency=medium [ Charles Plessy ] * Removed debian/libstaden-read1.symbols_old (that is what VCSes are for). [ Andreas Tille ] * New upstream version * New soname - so change library package name -- Andreas Tille Tue, 22 Sep 2015 20:27:29 +0200 staden-io-lib (1.14.0-1) unstable; urgency=medium * New upstream version * Deactivated libstaden-read1.symbols for the moment by renaming it to libstaden-read1.symbols_old (feel free to maintain this file but in this form the package does not build) * d/copyright: remove paragraph about not existing file -- Andreas Tille Mon, 27 Jul 2015 12:46:23 +0200 staden-io-lib (1.13.10-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * cme fix dpkg-control [ Charles Plessy ] * Multi-Arch: same. * Unfuzzy debian/patches/pathmax.patch. * Update symbols file. -- Andreas Tille Sun, 05 Jul 2015 16:34:13 +0200 staden-io-lib (1.13.7-1) unstable; urgency=medium * New upstream release. * Removed debian/patches/fix-bam-read.patch, applied upstream. * debian/libstaden-read1.symbols: updated. Some symbols are missing but it is in area of code that are considered beta (in my understanding). -- Charles Plessy Fri, 20 Jun 2014 08:04:00 +0900 staden-io-lib (1.13.5-3) unstable; urgency=medium * debian/rules: fix permissions in arch=all package only when it is really built Closes: #745692 -- Andreas Tille Thu, 24 Apr 2014 08:16:30 +0200 staden-io-lib (1.13.5-2) unstable; urgency=medium * use dh-autoreconf Closes: 744664 * Add autopkgtest using new staden-io-lib-examples package -- Andreas Tille Mon, 14 Apr 2014 13:08:48 +0200 staden-io-lib (1.13.5-1.1) unstable; urgency=medium * Non-maintainer upload. * Fix io_lib/bam.c read Patch by Aleksandar Zlicic Add fix-bam-read.patch Closes: #736565 -- Anibal Monsalve Salazar Tue, 01 Apr 2014 04:19:52 +0100 staden-io-lib (1.13.5-1) unstable; urgency=medium * New upstream release. * debian/libstaden-read1.symbols: updated symbols. * debian/patches/pathmax.patch: refreshed. * debian/patches/fix_bufferoverflow.patch: removed (applied upstream). -- Charles Plessy Sat, 15 Mar 2014 12:05:00 +0900 staden-io-lib (1.13.3-2) unstable; urgency=medium * debian/patches/fix_bufferoverflow.patch: Fix buffer overflow Thanks to James Bonfield (upstream) for the patch. Closes: #729276 -- Andreas Tille Thu, 12 Dec 2013 13:42:21 +0100 staden-io-lib (1.13.3-1) unstable; urgency=low * New upstream release. Closes: #715753, #715877, #715878, #715879, #715953. [ Adam Conrad ] * Use dh_autotools-dev to update config.{sub,guess} for new ports. [ Charles Plessy ] * Updated symbols file: some symbols have been removed, but they relate to obsolete code that is not expected to be used. * Conforms to Policy 3.9.5. -- Charles Plessy Sat, 30 Nov 2013 18:11:11 +0900 staden-io-lib (1.13.2-3) unstable; urgency=low * debian/patches: add patch to build on hurd_i386 * no need to remove package from mips anymore (Closes: #726875) -- Thorsten Alteholz Mon, 21 Oct 2013 18:10:59 +0200 staden-io-lib (1.13.2-2) unstable; urgency=low * Restore and update symbols file debian/libstaden-read1.symbols. -- Charles Plessy Sat, 10 Aug 2013 12:10:59 +0900 staden-io-lib (1.13.2-1) unstable; urgency=low [ Charles Plessy ] * New upstream release (Closes: #710227). * Use Debhelper 9. * Removed obsolete DM-Upload-Allowed field. * Machine-readable Debian copyright file. * Normalised debian/control with config-model-edit. * New symbols for libstaden-read1. * Search for libraries in tmp/usr/lib/x86_64-linux-gnu/. * Removed Breaks and Replaces (staden-io-lib-utils) satisfied in oldstable. * Normalised VCS URLs following Lintian's standard. [ Andreas Tille ] * debian/source/format: 3.0 (quilt) * debian/control: Build-Depends libcurl4-gnutls-dev Closes: #710243 * debian/libstaden-read1.symbols: Deleted because it simply breaks build. * debian/rules: Make use of d-shlibs which should help closing bug #710225 because it raises a flag if there is a new ABI * provide some help2man created manpages -- Andreas Tille Wed, 07 Aug 2013 14:31:36 +0200 staden-io-lib (1.12.4-1) unstable; urgency=low * New upstream release, with changes on endianness detection (closes: #579239). * Build on all architectures, (debian/control). * Added library symbols file (debian/libstaden-read1.symbols). * Incremented Standards-Version to reflect conformance with Policy 3.9.1 (debian/control, no changes needed). * Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev (debian/rules, debian/control). -- Charles Plessy Tue, 27 Jul 2010 21:07:57 +0900 staden-io-lib (1.12.2-2) unstable; urgency=low * Restrict staden-io-lib to i386 and amd64 platforms, which are the only ones where it is known to work and be used (debian/control). * Provide a patch for helping people interested in building this package on other architectures (debian/endianness.patch). * Incremented Standards-Version to reflect conformance with Policy 3.8.4 (debian/control, no changes needed). -- Charles Plessy Sat, 22 May 2010 22:50:35 +0900 staden-io-lib (1.12.2-1) unstable; urgency=low * New upstream release: extra options in srf2fastq and API changes in HashTable code. * Removed the libtool ‘.la’ library (debian/staden-read-dev.install). * Incremented Standards-Version to reflect conformance with Policy 3.8.3 (no changes needed). -- Charles Plessy Sun, 17 Jan 2010 22:09:42 +0900 staden-io-lib (1.12.1-1) unstable; urgency=low * Initial release (Closes: #530753) -- Charles Plessy Mon, 10 Aug 2009 23:32:59 +0900