Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: io_lib Upstream-Contact: James Bonfield Source: https://sourceforge.net/projects/staden/files/io_lib/ Files-Excluded: */varint Files: * Copyright: 1994-2017 Medical Research Council Genome Research Ltd (GRL) License: GRL or MRC Upstream-Comment: Newer files and changes are copyright Genome Research Ltd using the following compatible BSD licence. Disentangling which is which is somewhat tricky, but it's sufficient to say that work in the CVS/SVN tree from August 2002 will be bound by the GRL licence instead. Files: io_lib/binning.h Copyright: © 2014 Genome Research Ltd. License: GRL-new Files: io_lib/open_trace_file.c Copyright: © 2001-2005 454 Life Sciences Corporation License: GRL or MRC, and 454 Comment: This file contains some source code owned by 454 Life Sciences Corporation. Files: io_lib/sff.c Copyright: © Genome Research Limited (GRL) © 2001-2005 454 Life Sciences Corporation. License: GRL and 454 Comment: This file contains some extracts from a file owened by the 454 Life Sciences Corporation. Files: io_lib/md5.* Copyright: see License License: says-public-domain This is an OpenSSL-compatible implementation of the RSA Data Security, Inc. MD5 Message-Digest Algorithm (RFC 1321). . Homepage: http://openwall.info/wiki/people/solar/software/public-domain-source-code/md5 . Author: Alexander Peslyak, better known as Solar Designer . This software was written by Alexander Peslyak in 2001. No copyright is claimed, and the software is hereby placed in the public domain. In case this attempt to disclaim copyright and place the software in the public domain is deemed null and void, then the software is Copyright (c) 2001 Alexander Peslyak and it is hereby released to the general public under the following terms: . Redistribution and use in source and binary forms, with or without modification, are permitted. . There's ABSOLUTELY NO WARRANTY, express or implied. . (This is a heavily cut-down "BSD license".) . This differs from Colin Plumb's older public domain implementation in that no exactly 32-bit integer data type is required (any 32-bit or wider unsigned integer data type will do), there's no compile-time endianness configuration, and the function prototypes match OpenSSL's. No code from Colin Plumb's implementation has been reused; this comment merely compares the properties of the two independent implementations. . The primary goals of this implementation are portability and ease of use. It is meant to be fast, but not as fast as possible. Some known optimizations are not included to reduce source code size and avoid compile-time configuration. Files: debian/* Copyright: 2008–2015 Charles Plessy 2015-2017 Andreas Tille License: PD Please treat these files as if they were in your country’s public domain. License: 454 THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. . IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE. . Permission to use, copy, modify and distribute this software and its documentation for any purpose is hereby granted without fee, provided that this copyright and notice appears in all copies. License: GRL Copyright (c), Genome Research Ltd (GRL). All rights reserved. . Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . * Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . * Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . * Neither the name of the Genome Research Limited nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. License: GRL-new Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: . 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. . 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. . 3. Neither the names Genome Research Ltd and Wellcome Trust Sanger Institute nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY GENOME RESEARCH LTD AND CONTRIBUTORS "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL GENOME RESEARCH LTD OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. License: MRC Copyright (c) Medical Research Council 1994. All rights reserved. . Permission to use, copy, modify and distribute this software and its documentation for any purpose is hereby granted without fee, provided that this copyright and notice appears in all copies. . This file was written by James Bonfield, Simon Dear, Rodger Staden, as part of the Staden Package at the MRC Laboratory of Molecular Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom. . MRC disclaims all warranties with regard to this software.