staden-io-lib (1.15.0-1.1) unstable; urgency=medium
* Non-maintainer upload.
* Rename libraries for 64-bit time_t transition. Closes: #1063189
-- Benjamin Drung <bdrung@debian.org> Fri, 01 Mar 2024 12:46:06 +0000
staden-io-lib (1.15.0-1) unstable; urgency=medium
* Team upload.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* d/*lintian-overrides: fix mismatched override.
* typo.patch: fix typo caught by lintian.
-- Étienne Mollier <emollier@debian.org> Sat, 20 Jan 2024 20:35:25 +0100
staden-io-lib (1.14.15-1) unstable; urgency=medium
* New upstream version (bugfix release needed for salmon)
* Patch applied in previous package was included upstream
-- Andreas Tille <tille@debian.org> Tue, 14 Mar 2023 07:41:05 +0100
staden-io-lib (1.14.14+dfsg-3) unstable; urgency=medium
* Fix watch file
* Set upstream metadata fields: Bug-Submit.
-- Andreas Tille <tille@debian.org> Sun, 27 Nov 2022 07:02:30 +0100
staden-io-lib (1.14.14+dfsg-2) unstable; urgency=medium
* Work around missing declaration of encode_names in libhtscodecs2
version 1.3.0
Closes: #1022282
* Standards-Version: 4.6.1 (routine-update)
* Set upstream metadata fields: Archive.
-- Andreas Tille <tille@debian.org> Fri, 28 Oct 2022 07:19:58 +0200
staden-io-lib (1.14.14+dfsg-1) unstable; urgency=medium
* Fix watchfile to detect new versions on github
* New upstream version
* Standards-Version: 4.6.0 (routine-update)
* Remove trailing whitespace in debian/changelog (routine-update)
* Build-Depends: libbz2-dev, liblzma-dev
* Exclude compiled executable htscodecs/tests/varint
-- Andreas Tille <tille@debian.org> Wed, 06 Oct 2021 21:49:12 +0200
staden-io-lib (1.14.13-4) unstable; urgency=medium
* Fix build for 32 bit systems courtesy a patch from upstream. Updated
symbols file to match.
* REALLY install io_lib_config.h to /usr/include/io_lib/
-- Michael R. Crusoe <crusoe@debian.org> Tue, 28 Jul 2020 12:42:20 +0200
staden-io-lib (1.14.13-3) unstable; urgency=medium
* Install io_lib_config.h to /usr/include/io_lib/
* Add new symbols to debian/libstaden-read14.symbols
-- Michael R. Crusoe <crusoe@debian.org> Sun, 19 Jul 2020 17:25:41 +0200
staden-io-lib (1.14.13-2) unstable; urgency=medium
* Don't run dh_missing in for arch independent builds.
-- Michael R. Crusoe <crusoe@debian.org> Thu, 16 Jul 2020 13:49:13 +0200
staden-io-lib (1.14.13-1) unstable; urgency=medium
* New upstream version
* debhelper-compat 13 (routine-update)
* s390x patch removed, fixed upstream.
* Other patches refreshed.
* Remove trailing whitespace in debian/changelog (routine-update)
* Add salsa-ci file (routine-update)
-- Michael R. Crusoe <crusoe@debian.org> Thu, 16 Jul 2020 12:49:13 +0200
staden-io-lib (1.14.12-2) unstable; urgency=medium
* File more spelling typos
* Install upstream's manual pages
* include symbols in the package
* debian/control: fix typo in the package descriptions
* debian/rules: add hack to autoconf not forget MMAP with cross
building
* debian/patches/s390x: applied patch from upstream to fix big endian builds
* debian/patches/usedebianhtscodecs.patch: added DEP-3 patch metadata
* debian/upstream/metadata: added repository & bug entries
-- Michael R. Crusoe <michael.crusoe@gmail.com> Thu, 21 May 2020 13:13:22 +0200
staden-io-lib (1.14.12-1) unstable; urgency=medium
* Team upload.
[ Michael Crusoe ]
* New upstream version
* Standards-Version: 4.5.0 (routine-update)
* debhelper-compat 12 (routine-update)
* Remove many patches incorporated upstream
* autopkgtest: s/ADTTMP/AUTOPKGTEST_TMP/g (routine-update)
[ Steffen Moeller ]
* Fixed FTBFS - added dep on libhtscodecs-dev now distributed
as a git submodule of staden-io-lib.
* Rules-Requires-Root: no
* Adjusted library package name to updated soversion 14
* Added extra argument to d-shlibmove to override search for
unversioned libhtscodecs-dev package
-- Michael R. Crusoe <michael.crusoe@gmail.com> Mon, 10 Feb 2020 10:51:13 +0100
staden-io-lib (1.14.11-6) unstable; urgency=medium
* Switch to -O0 on armhf, mips. Closes: #916262
* Standards-Version: 4.3.0
* debian/control: mark staden-io-lib-examples as Multi-Arch: foreign
* changelog & debian/patches/spelling: typo fix (independent)
-- Michael R. Crusoe <michael.crusoe@gmail.com> Wed, 02 Jan 2019 03:08:23 -0800
staden-io-lib (1.14.11-5) unstable; urgency=medium
* Fix hash table HASH_INT_KEYS on 32-bit platforms (thanks to
upstream Rob Davies)
* Do not attempt to run test suite for architecture independent
build.
* Use serial tests
-- Andreas Tille <tille@debian.org> Fri, 07 Dec 2018 12:55:44 +0100
staden-io-lib (1.14.11-4) unstable; urgency=medium
* Apply three patches from upstream to fix bugs on several
architectures (thanks a lot for the support by James Bonfield)
Closes: #915450, #915459, #915460
-- Andreas Tille <tille@debian.org> Fri, 07 Dec 2018 07:56:28 +0100
staden-io-lib (1.14.11-3) unstable; urgency=medium
* Remove bashism in test script
Closes: #915460
-- Andreas Tille <tille@debian.org> Tue, 04 Dec 2018 19:35:00 +0100
staden-io-lib (1.14.11-2) unstable; urgency=medium
* Fix build on non-x86 architectures (thanks to James Bonfield
<jkb@sanger.ac.uk>)
Closes: #912451
* Remove trailing whitespace in debian/changelog
* Remove trailing whitespace in debian/copyright
-- Andreas Tille <tille@debian.org> Sun, 02 Dec 2018 08:50:21 +0100
staden-io-lib (1.14.11-1) unstable; urgency=medium
* New upstream version featuring SOVERSION bump
* Fix installation of docs
Closes: #912272
* debhelper 11
* Point Vcs fields to salsa.debian.org
* Standards-Version: 4.2.1
-- Andreas Tille <tille@debian.org> Mon, 29 Oct 2018 20:24:24 +0100
staden-io-lib (1.14.9-4) unstable; urgency=medium
* Standards-Version: 4.1.2
* Really fix fseeko()
Closes: #876840
-- Andreas Tille <tille@debian.org> Fri, 08 Dec 2017 08:32:32 +0100
staden-io-lib (1.14.9-3) unstable; urgency=medium
* Fix FTBFS on big endian: error: invalid operands to binary
(Thanks to James Bonfield and Christian Seiler)
Closes: #876839
* Upstream moved to Github
* Attempt to fix FTBFS on non-i386 32bit for fseeko()
Related to bug #876840
-- Andreas Tille <tille@debian.org> Thu, 28 Sep 2017 16:28:30 +0200
staden-io-lib (1.14.9-2) unstable; urgency=medium
* Update copyright
* Disable parallel build which was forced by debhelper 10
Closes: #876699
-- Andreas Tille <tille@debian.org> Mon, 25 Sep 2017 08:56:42 +0200
staden-io-lib (1.14.9-1) unstable; urgency=medium
* New upstream version
* Move packaging from SVN to Git
* debhelper 10
* Standards-Version: 4.1.0 (no changes needed)
-- Andreas Tille <tille@debian.org> Tue, 12 Sep 2017 15:35:36 +0200
staden-io-lib (1.14.8-2) unstable; urgency=medium
* make sure io_lib-config --libs will not return -pie (see #825461)
-- Andreas Tille <tille@debian.org> Fri, 27 May 2016 16:07:11 +0200
staden-io-lib (1.14.8-1) unstable; urgency=medium
* New upstream version
* cme fix dpkg-control
* Better hardening
-- Andreas Tille <tille@debian.org> Thu, 19 May 2016 00:38:22 +0200
staden-io-lib (1.14.7-1) unstable; urgency=medium
* New upstream version
* Add lintian-overrides for scripts in example package
* Assemble debian created manpages in debian/man1
* Add new manpage
* cme fix dpkg-control
-- Andreas Tille <tille@debian.org> Sun, 21 Feb 2016 09:14:45 +0100
staden-io-lib (1.14.6-2) unstable; urgency=medium
* Enable separate building of arch independet packages
Closes: #806112
* Adapt to latest d-shlibs
-- Andreas Tille <tille@debian.org> Tue, 24 Nov 2015 20:15:14 +0100
staden-io-lib (1.14.6-1) unstable; urgency=medium
* New upstream version
Closes: #793514
-- Andreas Tille <tille@debian.org> Sun, 08 Nov 2015 18:50:19 +0100
staden-io-lib (1.14.2-1) unstable; urgency=medium
[ Charles Plessy ]
* Removed debian/libstaden-read1.symbols_old (that is what VCSes
are for).
[ Andreas Tille ]
* New upstream version
* New soname - so change library package name
-- Andreas Tille <tille@debian.org> Tue, 22 Sep 2015 20:27:29 +0200
staden-io-lib (1.14.0-1) unstable; urgency=medium
* New upstream version
* Deactivated libstaden-read1.symbols for the moment by renaming
it to libstaden-read1.symbols_old (feel free to maintain this file
but in this form the package does not build)
* d/copyright: remove paragraph about not existing file
-- Andreas Tille <tille@debian.org> Mon, 27 Jul 2015 12:46:23 +0200
staden-io-lib (1.13.10-1) unstable; urgency=medium
[ Andreas Tille ]
* New upstream version
* cme fix dpkg-control
[ Charles Plessy ]
* Multi-Arch: same.
* Unfuzzy debian/patches/pathmax.patch.
* Update symbols file.
-- Andreas Tille <tille@debian.org> Sun, 05 Jul 2015 16:34:13 +0200
staden-io-lib (1.13.7-1) unstable; urgency=medium
* New upstream release.
* Removed debian/patches/fix-bam-read.patch, applied upstream.
* debian/libstaden-read1.symbols: updated. Some symbols are missing but
it is in area of code that are considered beta (in my understanding).
-- Charles Plessy <plessy@debian.org> Fri, 20 Jun 2014 08:04:00 +0900
staden-io-lib (1.13.5-3) unstable; urgency=medium
* debian/rules: fix permissions in arch=all package only when
it is really built
Closes: #745692
-- Andreas Tille <tille@debian.org> Thu, 24 Apr 2014 08:16:30 +0200
staden-io-lib (1.13.5-2) unstable; urgency=medium
* use dh-autoreconf
Closes: 744664
* Add autopkgtest using new staden-io-lib-examples package
-- Andreas Tille <tille@debian.org> Mon, 14 Apr 2014 13:08:48 +0200
staden-io-lib (1.13.5-1.1) unstable; urgency=medium
* Non-maintainer upload.
* Fix io_lib/bam.c read
Patch by Aleksandar Zlicic
Add fix-bam-read.patch
Closes: #736565
-- Anibal Monsalve Salazar <anibal@debian.org> Tue, 01 Apr 2014 04:19:52 +0100
staden-io-lib (1.13.5-1) unstable; urgency=medium
* New upstream release.
* debian/libstaden-read1.symbols: updated symbols.
* debian/patches/pathmax.patch: refreshed.
* debian/patches/fix_bufferoverflow.patch: removed (applied upstream).
-- Charles Plessy <plessy@debian.org> Sat, 15 Mar 2014 12:05:00 +0900
staden-io-lib (1.13.3-2) unstable; urgency=medium
* debian/patches/fix_bufferoverflow.patch: Fix buffer overflow
Thanks to James Bonfield <jkb@sanger.ac.uk> (upstream) for the patch.
Closes: #729276
-- Andreas Tille <tille@debian.org> Thu, 12 Dec 2013 13:42:21 +0100
staden-io-lib (1.13.3-1) unstable; urgency=low
* New upstream release. Closes: #715753, #715877, #715878, #715879, #715953.
[ Adam Conrad ]
* Use dh_autotools-dev to update config.{sub,guess} for new ports.
[ Charles Plessy ]
* Updated symbols file: some symbols have been removed, but they relate
to obsolete code that is not expected to be used.
* Conforms to Policy 3.9.5.
-- Charles Plessy <plessy@debian.org> Sat, 30 Nov 2013 18:11:11 +0900
staden-io-lib (1.13.2-3) unstable; urgency=low
* debian/patches: add patch to build on hurd_i386
* no need to remove package from mips anymore (Closes: #726875)
-- Thorsten Alteholz <debian@alteholz.de> Mon, 21 Oct 2013 18:10:59 +0200
staden-io-lib (1.13.2-2) unstable; urgency=low
* Restore and update symbols file debian/libstaden-read1.symbols.
-- Charles Plessy <plessy@debian.org> Sat, 10 Aug 2013 12:10:59 +0900
staden-io-lib (1.13.2-1) unstable; urgency=low
[ Charles Plessy ]
* New upstream release (Closes: #710227).
* Use Debhelper 9.
* Removed obsolete DM-Upload-Allowed field.
* Machine-readable Debian copyright file.
* Normalised debian/control with config-model-edit.
* New symbols for libstaden-read1.
* Search for libraries in tmp/usr/lib/x86_64-linux-gnu/.
* Removed Breaks and Replaces (staden-io-lib-utils) satisfied in oldstable.
* Normalised VCS URLs following Lintian's standard.
[ Andreas Tille ]
* debian/source/format: 3.0 (quilt)
* debian/control: Build-Depends libcurl4-gnutls-dev
Closes: #710243
* debian/libstaden-read1.symbols: Deleted because it simply breaks build.
* debian/rules: Make use of d-shlibs which should help closing bug
#710225 because it raises a flag if there is a new ABI
* provide some help2man created manpages
-- Andreas Tille <tille@debian.org> Wed, 07 Aug 2013 14:31:36 +0200
staden-io-lib (1.12.4-1) unstable; urgency=low
* New upstream release, with changes on endianness detection
(closes: #579239).
* Build on all architectures, (debian/control).
* Added library symbols file (debian/libstaden-read1.symbols).
* Incremented Standards-Version to reflect conformance with Policy 3.9.1
(debian/control, no changes needed).
* Moved io_lib-config from staden-io-lib-utils to libstaden-read-dev
(debian/rules, debian/control).
-- Charles Plessy <plessy@debian.org> Tue, 27 Jul 2010 21:07:57 +0900
staden-io-lib (1.12.2-2) unstable; urgency=low
* Restrict staden-io-lib to i386 and amd64 platforms, which are the
only ones where it is known to work and be used (debian/control).
* Provide a patch for helping people interested in building this
package on other architectures (debian/endianness.patch).
* Incremented Standards-Version to reflect conformance with Policy 3.8.4
(debian/control, no changes needed).
-- Charles Plessy <plessy@debian.org> Sat, 22 May 2010 22:50:35 +0900
staden-io-lib (1.12.2-1) unstable; urgency=low
* New upstream release: extra options in srf2fastq and API changes in
HashTable code.
* Removed the libtool ‘.la’ library (debian/staden-read-dev.install).
* Incremented Standards-Version to reflect conformance with Policy 3.8.3
(no changes needed).
-- Charles Plessy <plessy@debian.org> Sun, 17 Jan 2010 22:09:42 +0900
staden-io-lib (1.12.1-1) unstable; urgency=low
* Initial release (Closes: #530753)
-- Charles Plessy <plessy@debian.org> Mon, 10 Aug 2009 23:32:59 +0900