toil (6.1.0-3) unstable; urgency=medium * d/README.source: make more explicit the need to follow the instructions in debian/patch/settings_version.patch on every new source tarball. * d/control: drop unneeded dependency on python3-distutils. Closes: #1065987 -- Michael R. Crusoe Mon, 11 Mar 2024 12:14:38 +0100 toil (6.1.0-2) unstable; urgency=medium * d/control: azure support is gone, don't suggest it anymore. -- Michael R. Crusoe Wed, 28 Feb 2024 15:20:36 +0100 toil (6.1.0-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version * Run test for all supported Python versions * Do not force any specific docker version, just take the Debian packaged one [ Michael R. Crusoe ] * d/patches/setting_version.patch: regenerate according to the intructions in d/README.source. * d/tests/run-unit-tests: two more tests need skipping. -- Michael R. Crusoe Wed, 28 Feb 2024 11:42:03 +0100 toil (6.0.0-1) unstable; urgency=medium [ Andreas Tille ] * New upstream version Closes: #1058195 * Drop python3-future from Build-Depends Closes: #1059945 * Drop python3-boto from (Build-/Test-)Depends since upstream considers this module optional (see https://github.com/DataBiosphere/toil/issues/4718#issuecomment-1904474636 ) Closes: #1058237 * Build-Depends: python3-configargparse * Soften versioned dependency from cwltool [ Michael R. Crusoe ] * d/rules,d/control, d/patches/intersphinx: Fix some sphinx warnings, ignore the rest. * Add patch to avoid need for ruamel.yaml.string package. * Add patch to allow for older configarparser version. * Ignore the new test_cactus_integration * Enhance avoid_boto patch * d/patches: updated metatdata * d/copyright: upstream removed wdl_functions.py * Add patch to remove use of distutils by copying in strtobool(). * d/control: bump some minimum versions -- Michael R. Crusoe Tue, 23 Jan 2024 15:24:30 +0100 toil (5.12.0-2) unstable; urgency=medium * d/tests/run-unit-tests: fix typo. * Added patch to the tests: only request a single core. Closes: #1031192 * d/clean: remove docs/autoapi and another straggler. Closes: #1047298 -- Michael R. Crusoe Tue, 22 Aug 2023 15:46:37 +0200 toil (5.12.0-1) unstable; urgency=medium * New upstream version * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * refreshed patches. * d/rules: wdltoil_test has a new path. -- Michael R. Crusoe Mon, 21 Aug 2023 19:09:01 +0200 toil (5.11.0-2) unstable; urgency=medium * Exclude WDL from autopkgtests; as miniwdl isn't packaged yet for Debian -- Michael R. Crusoe Sat, 15 Jul 2023 09:43:56 +0200 toil (5.11.0-1) unstable; urgency=medium [ Andreas Tille ] * Team upload. * New upstream version * Build-Depends: python3-sphinx-autoapi, python3-sphinx-autodoc-typehints, python3-sphinxcontrib.autoprogram, docker.io [ Michael R. Crusoe ] * d/rules: skip the WDL tests (not packaged) * d/patches/setting_version.patch: update for Toil 5.11.0 -- Andreas Tille Fri, 14 Jul 2023 22:43:13 +0200 toil (5.9.2-2) unstable; urgency=medium * Add patch to handle errors when testing on ec2. -- Michael R. Crusoe Mon, 06 Feb 2023 19:24:07 +0100 toil (5.9.2-1) unstable; urgency=medium * Team upload. * New upstream version * Build-Depends: s/python3-xdist/python3-pytest-xdist/ Closes: #1030558 -- Andreas Tille Sun, 05 Feb 2023 08:38:00 +0100 toil (5.9.0-1) unstable; urgency=medium * New upstream version * d/control: match build-deps to upstream * run tests in parallel -- Michael R. Crusoe Fri, 03 Feb 2023 19:05:54 +0100 toil (5.8.0-3) unstable; urgency=medium * d/patches/setting_version.patch: really keep the python minor version out -- Michael R. Crusoe Wed, 18 Jan 2023 15:24:50 +0100 toil (5.8.0-2) unstable; urgency=medium * set exactPython to "python3" to always use the system version * Recommend podman in addition to docker/singularity -- Michael R. Crusoe Sun, 15 Jan 2023 15:30:29 +0100 toil (5.8.0-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.6.2 (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository-Browse. * refresh patches; remove test_safe_paths & typing_fix, they were applied upstream. * new dependency: python3-pubsub * new patch to avoid unpackaged mypy_boto3_s3 * Skip the aws/test_iam.py tests * python3-boto{,3} is now a hard requirement -- Michael R. Crusoe Thu, 12 Jan 2023 23:33:14 +0100 toil (5.7.1-2) unstable; urgency=medium * d/test/control: re-enable running on arm64 -- Michael R. Crusoe Mon, 26 Dec 2022 16:06:23 +0100 toil (5.7.1-1) unstable; urgency=medium * d/watch: update for new tag structure * New upstream version * refresh patches * d/patches/typing_fix: workaround for us skipping the AWS extra during building * d/patches/newer_cwltool: the expression module is now part of cwl-utils, not cwltool * d/rules: skip more tests that fail when run as root * d/patches/test_safe_paths: fix for running tests post-installation * d/tests/run-unit-tests: skip same tests we skip in d/rules -- Michael R. Crusoe Wed, 21 Dec 2022 11:30:22 +0100 toil (5.6.0-7) unstable; urgency=medium * Team upload. * Packaging update * Standards-Version: 4.6.1 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Drop unnecessary dependency on build-essential. * Make sure the doc applies to Debian installations with Python3 * Update lintian-overrides * Set python3.10 instead of python3.9 in setting_version.patch Closes: #1013275 -- Andreas Tille Mon, 18 Jul 2022 17:39:37 +0200 toil (5.6.0-6) unstable; urgency=medium * Team Upload. * d/t/control: Test dep on python3-all (Closes: #1009201) -- Nilesh Patra Sat, 16 Apr 2022 00:13:39 +0530 toil (5.6.0-5) unstable; urgency=medium * Team Upload. * d/t/control: Do not run autopkgtests on arm64 -- Nilesh Patra Sat, 12 Mar 2022 01:41:12 +0530 toil (5.6.0-4) unstable; urgency=medium * Team Upload. * d/salsa-ci.yml: Disable reprotest * Apply patches before running autopkgtests -- Nilesh Patra Fri, 11 Mar 2022 03:46:49 +0530 toil (5.6.0-3) unstable; urgency=medium * Team Upload. * Add patch to fix FTBFS with jobStores tests (Closes: #1005479) -- Nilesh Patra Thu, 10 Mar 2022 17:55:25 +0530 toil (5.6.0-2) unstable; urgency=medium * {Autopkg,}tests: sync the skiped tests -- Michael R. Crusoe Mon, 24 Jan 2022 11:42:07 +0100 toil (5.6.0-1) unstable; urgency=medium * New upstream version * Refresh patches, retiring cwl_test_path, spelling, and test_with_less_memory * Skip the py-tes dependency for now. * Skip testVirtualEnv -- Michael R. Crusoe Wed, 19 Jan 2022 14:23:52 +0100 toil (5.5.0-7) unstable; urgency=medium * Adjust depends to match cwltool 3.1.20211104071347 or greater. -- Michael R. Crusoe Sun, 07 Nov 2021 15:44:06 +0100 toil (5.5.0-6) unstable; urgency=medium * Support cwltool 3.1.20211104071347. -- Michael R. Crusoe Fri, 05 Nov 2021 17:24:21 +0100 toil (5.5.0-5) unstable; urgency=medium * Another adjustment of disk/memory defaults for the autopkgtests. * debian/patches/exit_code_exception: Fix exception checking for exit_code -- Michael R. Crusoe Fri, 08 Oct 2021 10:57:25 +0200 toil (5.5.0-4) unstable; urgency=medium * Adjust disk/memory defaults further downward for 32-bit systems. -- Michael R. Crusoe Wed, 06 Oct 2021 16:29:06 +0200 toil (5.5.0-3) unstable; urgency=medium * toil binary package depedency on recent cwltool as well. * Autopkgtests: skip collection of s3 tests -- Michael R. Crusoe Sun, 03 Oct 2021 13:20:18 +0200 toil (5.5.0-2) unstable; urgency=medium * Correct minimum versions for cwltool, python3-boto3 -- Michael R. Crusoe Thu, 30 Sep 2021 11:42:30 +0200 toil (5.5.0-1) unstable; urgency=medium [ Steffen Moeller ] * Fix watchfile to detect new versions on github (routine-update) * New upstream version * Standards-Version: 4.6.0 (routine-update) * d/p/python3: adopted upstream * skipped networking-based tests * d/u/metadta: onfirmed missing registry entries [ Michael R. Crusoe ] * New upstream version * Refresh patches * Bump minimum version of cwltool needed to 3.1.20210922203925 * Testing: ignore src/toil/test/lib/aws/test_s3.py * Add testing dependency on python3-yaml. * debian/patches/spelling: fix some typos * debian/toil.lintian-overrides: documented another false positive -- Michael R. Crusoe Wed, 29 Sep 2021 20:36:37 +0200 toil (5.2.0-5) unstable; urgency=high * debian/patches/test_with_less_memory: reduce default resource reqs for 32bit systems -- Michael R. Crusoe Wed, 10 Feb 2021 11:24:49 +0100 toil (5.2.0-4) unstable; urgency=high * autopkgtests: skip some s3 related tests. -- Michael R. Crusoe Mon, 08 Feb 2021 08:29:12 +0100 toil (5.2.0-3) unstable; urgency=high * autopkgtests: add missing dependency on python3-stubserver -- Michael R. Crusoe Sun, 07 Feb 2021 13:58:57 +0100 toil (5.2.0-2) unstable; urgency=high * Enable toil-wdl-runner now that python3-wdlparse is in Debian. * Enabled running the the tests during the build! -- Michael R. Crusoe Sun, 07 Feb 2021 13:26:16 +0100 toil (5.2.0-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.1 (routine-update) * Freshen patches * update some copyright info * The python module "wdlparse" is not yet packaged for Debian; disable toil-wdl-runner in this release. * debian/control: update the minimum version of cwltool required -- Michael R. Crusoe Sun, 24 Jan 2021 12:07:21 +0100 toil (4.2.0-1) unstable; urgency=medium * New upstream version * Remove unneeded no_virtualenv_to_create_manpages.patch; freshen remaining patches. * debian/tests/control: 'superficial' is a restriction, not a feature * Quiet a lintian false positive for repeated-path-segment -- Michael R. Crusoe Thu, 27 Aug 2020 11:26:41 +0200 toil (4.1.0-1) unstable; urgency=medium * New upstream version * Refreshed the patches * debhelper-compat 13 (routine-update) * Update patch metatdata -- Michael R. Crusoe Fri, 07 Aug 2020 17:14:01 +0200 toil (4.0.0-3) unstable; urgency=medium * Mark the autopkgtest as superficial. (Closes: #958574) -- Michael R. Crusoe Wed, 06 May 2020 20:58:48 +0200 toil (4.0.0-2) unstable; urgency=medium * Add python3-distutils dependency, needed for python3-docker * debian/copyright: remove leading "./" -- Michael R. Crusoe Mon, 27 Apr 2020 15:55:22 +0200 toil (4.0.0-1) unstable; urgency=medium * New upstream version * Freshen our patches * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * debian/copyright: use spaces rather than tabs to start continuation lines. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse * python3-chardet is no longer needed -- Michael R. Crusoe Mon, 06 Apr 2020 13:56:50 +0200 toil (3.24.0-1) unstable; urgency=medium * New upstream version * refresh debian/patches/settings_version.patch from pypi sdist (must be done with every new upstream release!) * Allow the newer schema salad package (Closes: #951139) -- Michael R. Crusoe Fri, 14 Feb 2020 13:41:12 +0100 toil (3.23.1-1) unstable; urgency=medium * New upstream version * Standards-Version: 4.5.0 (routine-update) * Removed patch 'debian/patches/fix_tests' which was applied upstream -- Steffen Moeller Thu, 06 Feb 2020 00:15:16 +0100 toil (3.21.0-1) unstable; urgency=medium * New upstream version -- Michael R. Crusoe Sun, 17 Nov 2019 15:13:56 +0100 toil (3.20.0-1) unstable; urgency=medium [ Michael R. Crusoe ] * Make the build reproducible, patch from lamby@debian.org; thanks! (Closes: #925191) * Update the patches. [ Andreas Tille ] * debhelper-compat 12 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.4.0 -- Michael R. Crusoe Wed, 20 Mar 2019 21:46:34 -0500 toil (3.18.0-2) unstable; urgency=medium * Remove errant recommend on python3-futures and depends on python3-pytest* (Closes: #919228) * Refined the package description, added 'Provides: cwl-runner' * Remove the partial mesos support until python3-mesos is packaged * Suggests: docker.io | singularity-container | docker-ce * Added debian/TODO, updated debian/README.{debian,source} * Add basic smoke test ( `toil* --help` ) as an AutoPkgTest -- Michael R. Crusoe Sun, 13 Jan 2019 23:25:16 -0800 toil (3.18.0-1) unstable; urgency=medium * Initial release (Closes: #851365) -- Michael R. Crusoe Mon, 07 Jan 2019 02:04:03 -0800