Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/ Upstream-Name: Arb Upstream-Contact: Arb development team , Ralf Westram Source: http://download.arb-home.de/release/ Files: * Copyright: 1994-2011 Department of Microbiology: - Dr. Wolfgang Ludwig (Biologist) Task: Group Leader; Inventor of ARB, knows everything about it - Ralf Westram (Computer scientist) Task: General ARB development - Dr. Lothar Richter (Biologist) Task: ARB Database Curation and Automatization - Arno Buchner (Biologist) Task: ARB Database Curation and Genomics . Department of Computer Science: - Prof. Dr. Thomas Ludwig Task: Computer Science Supervisor - Dr. Harald Meier (Biologist) Task: ARB GENOME programming - Gangolf Jobb (Biologist) Task: Development and integration of alignment- and tree-generation-software License: ARB * The ARB software and documentation are not in the public domain. * External programs distributed together with ARB are copyrighted by and are the property of their respective authors unless otherwise stated. * All other copyrights are owned by Lehrstuhl fuer Mikrobiologie, TU Muenchen. . USAGE LICENSE . You have the right to use this version of ARB for free. Please read as well the attached copyright notices below whether you may or may not install this package. . REDISTRIBUTION LICENSE . * This release of the ARB program and documentation may not be sold or incorporated into a commercial product, in whole or in part, without the expressed written consent of the Technical University of Munich and of its supervisors Oliver Strunk, Ralf Westram & Wolfgang Ludwig. * All interested parties may redistribute and modify ARB as long as all copies are accompanied by this license information and all copyright notices remain intact. Parties redistributing ARB must do so on a non-profit basis, charging only for cost of media. * If you modify parts of ARB and redistribute these changes the 'Lehrstuhl fuer Mikrobiologie' gains the right to incorporate these changes into ARB and to redistribute them with future versions of ARB. . Disclaimer . THE TU MUENCHEN AND THE VARIOUS AUTHORS OF ARB GIVE NO WARRANTIES, EXPRESSED OR IMPLIED FOR THE SOFTWARE AND DOCUMENTATION PROVIDED, INCLUDING, BUT NOT LIMITED TO WARRANTY OF MERCHANTABILITY AND WARRANTY OF FITNESS FOR A PARTICULAR PURPOSE. User understands the software is a research tool for which no warranties as to capabilities or accuracy are made, and user accepts the software "as is." User assumes the entire risk as to the results and performance of the software and documentation. The above parties cannot be held liable for any direct, indirect, consequential or incidental damages with respect to any claim by user or any third party on account of, or arising from the use of software and associated materials. This disclaimer covers both the ARB core applications and all external programs used by ARB. . Additional not for Debian packaging: . Hereby anybody is granted the right to build debian-pakets of the ARB software package (http:://www.arb-home.de/) and publish them on debian mirrors (or any other way of debian-distribution). . This includes any debian derivates like ubuntu. . The ARB developers may (but most likely wont ever) revoke this granting. If really done so, it'll only affect ARB versions released after such a revocation. . 9. July 2008 Ralf Westram Files: GDE/* Copyright: 2004-2008 The Board of Trustees of the University of Illinois and by Steven Smith License: GDE * The Genetic Data Environment (GDE) software and documentation are not in the public domain. Portions of this code are owned and copyrighted by the The Board of Trustees of the University of Illinois and by Steven Smith. External functions used by GDE are the property of their authors. This release of the GDE program and documentation may not be sold, or incorporated into a commercial product, in whole or in part without the expressed written consent of the University of Illinois and of its author, Steven Smith. * All interested parties may redistribute the GDE as long as all copies are accompanied by this documentation, and all copyright notices remain intact. Parties interested in redistribution must do so on a non-profit basis, charging only for cost of media. Modifications to the GDE core editor should be forwarded to the author Steven Smith. External programs used by the GDE are copyrighted by, and are the property of their respective authors unless otherwise stated. Files: GDE/PHYLIP/* Copyright: (c) Copyright 1986-1993 by Joseph Felsenstein and the University of Washington. License: PHYLIP_non-free Permission is granted to copy this document provided that no fee is charged for it and that this copyright notice is not removed. Comment: Remark from the Debian package maintainer Andreas Tille Phylp is not used in the binary package because the Debian package is used which is in the non-free part of Debian. Remark: After heavy discussion with the author of Phylip it was not possible to convince him to use a free license. Files: GDE/SUPPORT/CAP2.c Copyright: (C) 1991 Xiaoqiu Huang License: CAP2_non-free The distribution of the program is granted provided no charge is made and the copyright notice is included. Comment: Remark from the Debian package maintainer Andreas Tille I was unable to find a source URL where this program which is claimed as external can be downloaded. Files: CONVERTALN/* Copyright: (C) 1992 Wen-Min Kuan License: ARP_permissive The files in this directory do not contain an explicite license statement. It has to be assumed that the license is the same as the general usage and redistribution license for Arb and the authors of Arb got a permission to distribute this code in their product. . This paragraph was just added to the copyright file to mention that there is some copyrighted work which was not mentioned above. Comment: convert_aln -- an alignment(or sequence) converter written by Wen-Min Kuan for the Ribsomal Database Project(RDP), April 28, 1992. . Remark from the Debian package maintainer Andreas Tille: I was unable to find a source URL where this program which is claimed as external can be downloaded. Files: GDE/FASTDNAML/* Copyright: (C) 1998, 1999, 2000 by Gary J. Olsen, 1986 - 1990 by the University of Washington and Joseph Felsenstein. License: GPL Comment: Remark from the Debian package maintainer Andreas Tille: This is not used in the binary package because it is available as official Debian package and has a free license (see this package). Files: GDE/RAxML/a* Copyright: (C) 2004-2008 Alexandros Stamatakis, Michael Ott, Thomas Ludwig License: GPL Comment: There is also a file GDE/RAxML/softwaredisclaimer in this directory which contains some license text which might be provided in a private mail or whatever from the RAxML authors to the Arb authors. The relevance of this file is completely unclear because RAxML as it can be obtained from http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm is GPLed and the remaining files in this directory are neither copyrighted by the RAxML authors nor do they feature a similar license statement. This file is subject for clarification by the Arb authors. Files: GDE/RAxML/c* GDE/RAxML/p* Copyright: (C) 1993-2002 by the University of Washington. Written by Joseph Felsenstein, Hisashi Horino, and others License: RAxML_non-free Permission is granted to copy and use this program provided no fee is charged for it and provided that this copyright notice is not removed. Files: GDE/RAxML/g* Copyright: (C) 1987, 1993, 1994 The Regents of the University of California. All rights reserved. License: BSD-3-clause Copyright (c) The Regents of the University of California. All rights reserved. . Redistribution and use in source and binary forms, with or without modification, are permitted provided that the following conditions are met: 1. Redistributions of source code must retain the above copyright notice, this list of conditions and the following disclaimer. 2. Redistributions in binary form must reproduce the above copyright notice, this list of conditions and the following disclaimer in the documentation and/or other materials provided with the distribution. 3. Neither the name of the University nor the names of its contributors may be used to endorse or promote products derived from this software without specific prior written permission. . THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE. Files: GDE/TREEPUZZLE/* Copyright: (C) 1995-1999 Korbinian Strimmer and Arndt von Haeseler (C) 1999-2001 Heiko A. Schmidt, Korbinian Strimmer,Martin Vingron, Arndt von Haeseler License: GPL Comment: This code is not used in the binary package because it is available as official Debian package and has a free license (see this package). Files: READSEQ/* Copyright: 1990-1993 D. Gilbert License: PD readseq is public domain software Comment: This code is not used in the binary package because it is available as official Debian package and has a free license (see this package). Files: debian/* Copyright: (C) 2008-2013 Andreas Tille License: GPL License: GPL On Debian systems, the complete text of the GNU General Public License can be found in `/usr/share/common-licenses/GPL-2'.