Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Upstream-Name: Arb
Upstream-Contact: Arb development team <devel@arb-home.de>,
Ralf Westram <ralf@arb-home.de>
Source: http://download.arb-home.de/release/
Files: *
Copyright: 1994-2011
Department of Microbiology:
- Dr. Wolfgang Ludwig (Biologist) <ludwig@arb-home.de>
Task: Group Leader; Inventor of ARB, knows everything about it
- Ralf Westram (Computer scientist) <ralf@arb-home.de>
Task: General ARB development
- Dr. Lothar Richter (Biologist) <richter@arb-home.de>
Task: ARB Database Curation and Automatization
- Arno Buchner (Biologist) <buchner@arb-home.de>
Task: ARB Database Curation and Genomics
.
Department of Computer Science:
- Prof. Dr. Thomas Ludwig <thomas.ludwig@informatik.uni-heidelberg.de>
Task: Computer Science Supervisor
- Dr. Harald Meier (Biologist) <meierh@arb-home.de>
Task: ARB GENOME programming
- Gangolf Jobb (Biologist) <jobb@arb-home.de>
Task: Development and integration of alignment- and tree-generation-software
License: ARB
* The ARB software and documentation are not in the public domain.
* External programs distributed together with ARB are copyrighted
by and are the property of their respective authors unless otherwise stated.
* All other copyrights are owned by Lehrstuhl fuer Mikrobiologie, TU Muenchen.
.
USAGE LICENSE
.
You have the right to use this version of ARB for free. Please read as well the
attached copyright notices below whether you may or may not install this package.
.
REDISTRIBUTION LICENSE
.
* This release of the ARB program and documentation may not be sold or
incorporated into a commercial product, in whole or in part, without
the expressed written consent of the Technical University of Munich and
of its supervisors Oliver Strunk, Ralf Westram & Wolfgang Ludwig.
* All interested parties may redistribute and modify ARB as long as all
copies are accompanied by this license information and all copyright
notices remain intact. Parties redistributing ARB must do so on a non-profit
basis, charging only for cost of media.
* If you modify parts of ARB and redistribute these changes the
'Lehrstuhl fuer Mikrobiologie' gains the right to incorporate these changes
into ARB and to redistribute them with future versions of ARB.
.
Disclaimer
.
THE TU MUENCHEN AND THE VARIOUS AUTHORS OF ARB GIVE NO WARRANTIES, EXPRESSED
OR IMPLIED FOR THE SOFTWARE AND DOCUMENTATION PROVIDED, INCLUDING, BUT NOT
LIMITED TO WARRANTY OF MERCHANTABILITY AND WARRANTY OF FITNESS FOR A PARTICULAR
PURPOSE.
User understands the software is a research tool for which no warranties as to
capabilities or accuracy are made, and user accepts the software "as is."
User assumes the entire risk as to the results and performance of the software
and documentation. The above parties cannot be held liable for any direct,
indirect, consequential or incidental damages with respect to any claim by user
or any third party on account of, or arising from the use of software and
associated materials. This disclaimer covers both the ARB core applications and
all external programs used by ARB.
.
Additional not for Debian packaging:
.
Hereby anybody is granted the right to build debian-pakets of the ARB
software package (http:://www.arb-home.de/) and publish them on debian
mirrors (or any other way of debian-distribution).
.
This includes any debian derivates like ubuntu.
.
The ARB developers may (but most likely wont ever) revoke this
granting. If really done so, it'll only affect ARB versions released
after such a revocation.
.
9. July 2008
Ralf Westram <westram@arb-home.de>
Files: GDE/*
Copyright: 2004-2008 The Board of Trustees of the University of Illinois and by Steven Smith
License: GDE
* The Genetic Data Environment (GDE) software and documentation are not in the
public domain. Portions of this code are owned and copyrighted by the
The Board of Trustees of the University of Illinois and by Steven Smith.
External functions used by GDE are the property of their authors.
This release of the GDE program and documentation may not be sold, or
incorporated into a commercial product, in whole or in part without the
expressed written consent of the University of Illinois and of its author,
Steven Smith.
* All interested parties may redistribute the GDE as long as all copies are
accompanied by this documentation, and all copyright notices remain intact.
Parties interested in redistribution must do so on a non-profit basis,
charging only for cost of media. Modifications to the GDE core editor
should be forwarded to the author Steven Smith. External programs used
by the GDE are copyrighted by, and are the property of their respective
authors unless otherwise stated.
Files: GDE/PHYLIP/*
Copyright: (c) Copyright 1986-1993 by Joseph Felsenstein and the University
of Washington.
License: PHYLIP_non-free
Permission is granted to copy this document provided that
no fee is charged for it and that this copyright notice is not removed.
Comment: Remark from the Debian package maintainer Andreas Tille
Phylp is not used in the binary package because the Debian
package is used which is in the non-free part of Debian.
Remark: After heavy discussion with the author of Phylip it
was not possible to convince him to use a free license.
Files: GDE/SUPPORT/CAP2.c
Copyright: (C) 1991 Xiaoqiu Huang
License: CAP2_non-free
The distribution of the program is granted provided no charge
is made and the copyright notice is included.
Comment: Remark from the Debian package maintainer Andreas Tille
I was unable to find a source URL where this program which is
claimed as external can be downloaded.
Files: CONVERTALN/*
Copyright: (C) 1992 Wen-Min Kuan
License: ARP_permissive
The files in this directory do not contain an explicite license
statement. It has to be assumed that the license is the same as the
general usage and redistribution license for Arb and the authors of
Arb got a permission to distribute this code in their product.
.
This paragraph was just added to the copyright file to mention that
there is some copyrighted work which was not mentioned above.
Comment: convert_aln -- an alignment(or sequence) converter written
by Wen-Min Kuan for the Ribsomal Database Project(RDP), April 28, 1992.
.
Remark from the Debian package maintainer Andreas Tille:
I was unable to find a source URL where this program which is
claimed as external can be downloaded.
Files: GDE/FASTDNAML/*
Copyright: (C) 1998, 1999, 2000 by Gary J. Olsen,
1986 - 1990 by the University of Washington and Joseph Felsenstein.
License: GPL
Comment: Remark from the Debian package maintainer Andreas Tille:
This is not used in the binary package because it is available as
official Debian package and has a free license (see this package).
Files: GDE/RAxML/a*
Copyright: (C) 2004-2008 Alexandros Stamatakis, Michael Ott, Thomas Ludwig
License: GPL
Comment: There is also a file GDE/RAxML/softwaredisclaimer in this directory
which contains some license text which might be provided in a private
mail or whatever from the RAxML authors to the Arb authors. The relevance
of this file is completely unclear because RAxML as it can be obtained from
http://icwww.epfl.ch/~stamatak/index-Dateien/Page443.htm is GPLed and the
remaining files in this directory are neither copyrighted by the RAxML
authors nor do they feature a similar license statement. This file is
subject for clarification by the Arb authors.
Files: GDE/RAxML/c* GDE/RAxML/p*
Copyright: (C) 1993-2002 by the University of Washington.
Written by Joseph Felsenstein, Hisashi Horino, and others
License: RAxML_non-free
Permission is granted to copy and use this program provided no
fee is charged for it and provided that this copyright notice is not
removed.
Files: GDE/RAxML/g*
Copyright: (C) 1987, 1993, 1994
The Regents of the University of California. All rights reserved.
License: BSD-3-clause
Copyright (c) The Regents of the University of California.
All rights reserved.
.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
1. Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
2. Redistributions in binary form must reproduce the above copyright
notice, this list of conditions and the following disclaimer in the
documentation and/or other materials provided with the distribution.
3. Neither the name of the University nor the names of its contributors
may be used to endorse or promote products derived from this software
without specific prior written permission.
.
THIS SOFTWARE IS PROVIDED BY THE REGENTS AND CONTRIBUTORS ``AS IS'' AND
ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL THE REGENTS OR CONTRIBUTORS BE LIABLE
FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL
DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS
OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF
SUCH DAMAGE.
Files: GDE/TREEPUZZLE/*
Copyright: (C) 1995-1999 Korbinian Strimmer and Arndt von Haeseler
(C) 1999-2001 Heiko A. Schmidt, Korbinian Strimmer,Martin Vingron,
Arndt von Haeseler
License: GPL
Comment: This code is not used in the binary package because it is available
as official Debian package and has a free license (see this package).
Files: READSEQ/*
Copyright: 1990-1993 D. Gilbert <gilbertd@bio.indiana.edu>
License: PD
readseq is public domain software
Comment: This code is not used in the binary package because it is
available as official Debian package and has a free license (see this
package).
Files: debian/*
Copyright: (C) 2008-2013 Andreas Tille <tille@debian.org>
License: GPL
License: GPL
On Debian systems, the complete text of the GNU General Public
License can be found in `/usr/share/common-licenses/GPL-2'.