cufflinks (2.2.1+dfsg.1-9) unstable; urgency=medium * Fix autoconf issue Closes: #998241 * Enable build using gcc-11 by forcing -std=c++14 * Remove redundant debian/gbp.conf * Standards-Version: 4.6.0 (routine-update) * cme fix dpkg-control -- Andreas Tille Mon, 08 Nov 2021 14:18:10 +0100 cufflinks (2.2.1+dfsg.1-8) unstable; urgency=medium [ Reiner Herrmann ] * fix FTBFS with GCC 10 Closes: #966191 [ Andreas Tille ] * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). -- Andreas Tille Sun, 02 Aug 2020 10:02:34 +0200 cufflinks (2.2.1+dfsg.1-7) unstable; urgency=medium * Team upload * Actually launch dh with --python3 -- Gianfranco Costamagna Fri, 21 Feb 2020 16:31:57 +0100 cufflinks (2.2.1+dfsg.1-6) unstable; urgency=medium * Team upload * cherry-pick Ubuntu patch from to use dh-python and correctly evaluate runtime dependencies -- Gianfranco Costamagna Fri, 21 Feb 2020 16:06:30 +0100 cufflinks (2.2.1+dfsg.1-5) unstable; urgency=medium [ Steffen Möller ] * Update metadata with ref to conda [ Alexandre Mestiashvili ] * Introduce patch converting cuffmerge to python3, Thanks to Cheng H. Lee, Closes: #936351, #942930 * d/control: s/python/python3/g, bump Policy to 4.5.0 -- Alexandre Mestiashvili Sat, 08 Feb 2020 18:50:33 +0100 cufflinks (2.2.1+dfsg.1-4) unstable; urgency=medium [ Valentin Marcon ] * Correct DOI [ Alexandre Mestiashvili ] * Drop gffread binary, add gffread package to Recommends in d/control Closes: #934600 * Switch to debhelper-compat, bump Policy to 4.4.0, update Uploader's email address * Add README.Debian, explaining why gffread is removed from cufflinks -- Alexandre Mestiashvili Tue, 20 Aug 2019 17:51:28 +0200 cufflinks (2.2.1+dfsg.1-3) unstable; urgency=medium * XS-Autobuild: yes * d/rules: no manual inforcement of compression which is default * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 -- Andreas Tille Thu, 18 Oct 2018 15:30:41 +0200 cufflinks (2.2.1+dfsg.1-2) unstable; urgency=medium [ Steffen Moeller ] * debian/upstream/metadata: - Added references to software catalogues. - yamllint cleanliness [ Alexandre Mestiashvili ] * Add patch fixing FTBFS with upcoming boost1.65+, Closes: #880375 thanks to Dimitri John Ledkov * Bump Standards-Version to 4.1.1 -- Alexandre Mestiashvili Thu, 02 Nov 2017 09:48:09 +0100 cufflinks (2.2.1+dfsg.1-1) unstable; urgency=medium [ Mattia Rizzolo ] * add a closes to the previous changelog entry [ Alexandre Mestiashvili ] * Update d/watch * Update d/copyright, add Files-Excluded section, use https for copyrigth-format, add Upstream-Name * New upstream version 2.2.1+dfsg.1 * Update d/rules, use variables provided by /usr/share/dpkg/default.mk * Add patch fixing ftbfs with gcc-7, Closes: #871234 thanks to Jeff Epler * Update 0003-fix_includes_path.patch and 0001-fix_spelling.patch * Bump Standards-Version in d/control -- Alexandre Mestiashvili Tue, 05 Sep 2017 23:42:17 +0200 cufflinks (2.2.1-3) unstable; urgency=medium * Use unversioned libboost. (Thanks for the hint to Gianfranco Costamagna) Closes: 833760 * Fix gcc-6.1 build issue caused by an unmaintained code copy of liblemon. Thanks for the hint to Graham Inggs Closes: #833493 -- Andreas Tille Tue, 16 Aug 2016 13:46:04 +0200 cufflinks (2.2.1-2) unstable; urgency=medium * Watch file pointing to Github * cme fix dpkg-control * Use libboost 1.60 Closes: #797280, #822121 * hardening=+all -- Andreas Tille Tue, 12 Jul 2016 14:12:45 +0200 cufflinks (2.2.1-1) unstable; urgency=medium * d/control: cme fix dpkg-control * Imported Upstream version 2.2.1 -- Alexandre Mestiashvili Fri, 16 May 2014 16:59:52 +0200 cufflinks (2.2.0-1) unstable; urgency=medium [ James McCoy ] * Move debian/upstream to debian/upstream/metadata [ Alexandre Mestiashvili ] * Imported Upstream version 2.2.0 * d/rules: - link to the serialization library "-lboost_serialization" - generate man pages automatically with help2man - separate rule for manpage for gffread as it doesn't return usage message when executed without arguments * d/control: - use canonical VCS-* fields - updated Standards-Version - Build-Depends: add help2man * d/patches/gffread_show_usage.patch: fix wrong USAGE indentation causing buffer overflow in gffread when using -h, --help and some other arguments * d/*.1: removed obsoleted manpages * d/copyright: updated Source, Copyright years -- Alexandre Mestiashvili Fri, 11 Apr 2014 13:12:25 +0200 cufflinks (2.1.1-4) unstable; urgency=low * Force use boost_system, boost_thread when linking. Fixing FTBFS in ubuntu. * Enable parallel build. -- Dmitrijs Ledkovs Wed, 23 Oct 2013 16:30:40 +0100 cufflinks (2.1.1-3) unstable; urgency=low * Rebuild against boost1.54. -- Dmitrijs Ledkovs Sat, 07 Sep 2013 17:10:26 +0100 cufflinks (2.1.1-2) unstable; urgency=low * Fix failing to build from source against boost1.53. (Closes: #709252) -- Dmitrijs Ledkovs Thu, 23 May 2013 01:05:02 +0100 cufflinks (2.1.1-1) unstable; urgency=low [Carlos Borroto] * New upstream release. * Added libeigen3-dev to build-deps. * Modified fix_includes_path to properly include Eigen library. * Bumped libboost-dev requirement to >= 1.47.0 [ Alexandre Mestiashvili ] * Imported debian/patches/0004-fix-m64-usage-and-lfs.patch, Closes: #675985 [ Andreas Tille ] * Upstream release 2.1.1 (+ adapted patches) Closes: #687968 * debian/control: - Removed: DM-Upload-Allowed - Standards-Version: 3.9.4 - Debhelper 9 (also d/compat) requires d/p/format-security.patch for hardening via --format-security - normalised format -- Andreas Tille Wed, 22 May 2013 13:27:40 +0200 cufflinks (1.3.0-2) unstable; urgency=low [ Charles Plessy ] * Normalised and summarised debian/copyright. [ Carlos Borroto ] * Added tophat to Enhances [ Andreas Tille ] * debian/upstream: Added references as specified in tasks file * debian/copyright: Added Upstream-Contact e-mail * debian/patches/gcc-4.7.patch: Fix gcc-4.7 build issue Closes: #672744 -- Charles Plessy Thu, 24 May 2012 12:36:16 +0900 cufflinks (1.3.0-1) unstable; urgency=low [ Alexandre Mestiashvili ] * New upstream release * Fixed spelling error. * Updated source version [ Charles Plessy ] * Removed quilt patch management, and rely on dpkg-dev exclusively. -- Charles Plessy Fri, 06 Jan 2012 09:20:23 +0900 cufflinks (1.2.1-1) unstable; urgency=low [ Alexandre Mestiashvili ] * New upstream release * added patch to fix bam.h location . * debian/rules invoke autoreconf * debian/rules added overrides for dh_auto_clean and dh_clean * added missing dependency - quilt .We use dh_quilt_patch, dh_quilt_unpatch helpers * debian/control added dependency python (>=2.6.6-3~) for source package * debian/control added dependency python (>=2.6.6-3~) for binary package [ Andreas Tille ] * Added myself to uploaders * Debhelper 8 (control+compat) * debian/watch: removed dh-make template from watch file * debian/rules: invoke autotools_dev [ Charles Plessy ] * Switch to non-free section because of the locfit license (debian/control). * Added myself to Uploaders (debian/control). * Compress binary package with xz (debian/rules). * Pre-depend on dpkg (>= 1.15.6) for xz compression (Ubuntu LTS). -- Charles Plessy Sun, 11 Dec 2011 12:07:02 +0900 cufflinks (1.0.3-1) UNRELEASED; urgency=low [ Alex Mestiashvili ] * added docs * added missing dependency * libbam-dev provides necessary headers only from 0.1.16 version . Fixed in control file. [ Charles Plessy ] * Add debian/gbp.conf to show the package is managed with git-buildpackage. * Converted Debian copyright file to machine-readable format (DEP 5). * Reviewed copyright and license notices, and found that locfit is non-free… [ Alex Mestiashvili ] * Imported Upstream version 1.0.3 (bugfix) -- Alex Mestiashvili Wed, 08 Jun 2011 06:31:10 +0000 cufflinks (1.0.2-1) UNRELEASED; urgency=low * Initial release (Closes: #627799) -- Alex Mestiashvili Tue, 24 May 2011 13:43:09 +0200