This work was packaged for Debian by:

    Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de>
    and Steffen Moeller <moeller@debian.org>
    on Fri, 25 Jun 2010 17:23:58 +0200

It was downloaded from <http://pycogent.sorceforge.net>

Files: *

Upstream authors:

    Andreas Wilm <andreas.wilm@ucd.ie>
    Andrew Butterfield
    Amanda Birmingham <amanda.birmingham@thermofisher.com>
    Brett Easton
    Catherine Lozuopone <lozupone@colorado.edu>
    Daniel McDonald <mcdonadt@colorado.edu>
    Edward Lang
    Felix Schill
    Gavin Huttley <gavin.huttley@anu.edu.au>
    Greg Caporaso <gregcaporaso@gmail.com,caporaso@colorado.edu>
    Helen Lindsay
    Hua Ying <Hua.Ying@anu.edu.au>
    Jeremy Widmann <jeremy.widmann@colorado.edu>
    Jens Reeder <jreeder@colorado.edu>
    Jesse Zaneveld
    Julia Goodrich <julia.goodrich@colorado.edu>
    Justin Kuczynski <justinak@gmail.com>
    Kyle Bittinger <kylebittinger@gmail.com>
    Kristian Rother <krother@rubor.de>
    Matthrew Wakefield <matthew.wakefield@wehi.edu.au>
    Marcin Cieslik <mpc4p@virginia.edu>
    Micah Hamady <hamady@colorado.edu>
    Mike Robeson
    Peter Maxwell <pm67nz@gmail.com>
    Rob Knight <rob@spot.colorado.edu>
    Sandra Smit <sandra.smit@colorado.edu>
    Shandy Wikman <ens01svn@cs.umu.se>
    Stephanie Wilson
    Tianlin Wang
    Von Bing Yap
    Zongzhi Liu <zongzhi.liu@gmail.com>

Copyright:

    Copyright 2007-2009, The Cogent Project

License:

    GPL-2


Files: cogent/maths/matrix_invert.c
       cogent/maths/eigen.c (partly)

Upstream author: Z. Yang <z.yang@ucl.ac.uk>

Copyright: (C) Z. Yang and the University College London

License:

    Redistribution is ok as long with proper copyright notice.
    It is free to use/modify/redistribute only for academia. Others
    need to contact the authors.

    We clarified the situation by the following email exchange:

	> On 07/23/2010 04:33 PM, Ziheng Yang wrote:
	>>
	>>
	>> I have not signed up for any of the open source licenses.  Right now
	>> paml is free for academics only.  For other users I am dealing with
	>> the requests on a case-by-case basis.
	>>
	>> Yes, it will be fine for you to include paml programs in QIIME, or
	>> compile executables using the source at the paml web site, as long as
	>> you include appropriate acknowledgements.
	>>
	>> Best wishes,
	>>
	>> Ziheng Yang
	>>
	>>
	>>
	>> At 10:14 28/06/2010 +0200, srigirish wrote:
	>>> Dear Prof. Yang,
	>>>
	>>> I am using the QIIME package
	>>> <http://qiime.sourceforge.net/>http://qiime.sourceforge.net/ and
	>>> found the local installation to be non-trivial. Together with my
	>>> colleague I am now preparing all the build and runtime dependencies
	>>> to Debian and Ubuntu, in the process of which I got to a note in the
	>>> PyCogent package, suggesting to get your explicit OK for a
	>>> redistribution of your code. May I go ahead? Also we'd need a
	>>> clarification if your code may be modified and still be
	>>> redistributed. There are plenty of Open Source licenses
	>>> (<http://en.wikipedia.org/wiki/Open-source_license>http://en.wikipedia.org/wiki/Open-source_license),
	>>> if you could pick one of these, this would be excellent.
	>>>
	>>> I am looking forward to your early reply.
	>>>
	>>> Best Regards,
	>>>
	>>> S. Sri Girish

Files: debian/*

The Debian packaging is:

    Copyright (C) 2010 Sri Girish Srinivasa Murthy <srigirish@evolbio.mpg.de>
    and Steffen Moeller <moeller@debian.org>

and is licensed under the same copyright,
see `/usr/share/common-licenses/GPL-2'.